BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0059.7
(1706 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 711 0.0
gb|AAU44314.1| putative polyprotein [Oryza sativa (japonica cult... 460 e-127
gb|AAP53950.1| putative polyprotein [Oryza sativa (japonica cult... 458 e-127
ref|NP_908712.1| putative polyprotein [Oryza sativa (japonica cu... 458 e-127
ref|NP_918386.1| B1064G04.18 [Oryza sativa (japonica cultivar-gr... 458 e-127
gb|AAU44275.1| putative polyprotein [Oryza sativa (japonica cult... 458 e-127
ref|XP_474025.1| OSJNBa0043L09.21 [Oryza sativa (japonica cultiv... 457 e-126
ref|NP_917356.1| putative polyprotein [Oryza sativa (japonica cu... 457 e-126
gb|AAV25049.1| putative polyprotein [Oryza sativa (japonica cult... 456 e-126
emb|CAE05339.2| OSJNBa0079M09.11 [Oryza sativa (japonica cultiva... 456 e-126
ref|XP_471558.1| OSJNBa0019J05.19 [Oryza sativa (japonica cultiv... 455 e-126
ref|NP_908894.1| putative GAG-POL precursor [Oryza sativa (japon... 455 e-126
ref|NP_918342.1| putative polyprotein [Oryza sativa (japonica cu... 455 e-126
gb|AAK55774.1| Putative polyprotein [Oryza sativa] 454 e-126
gb|AAX96661.1| retrotransposon protein, putative, unclassified [... 454 e-125
gb|AAO66535.1| transposon protein, putative, unclassified [Oryza... 452 e-125
ref|XP_470984.1| OSJNBb0004G23.13 [Oryza sativa (japonica cultiv... 451 e-124
gb|AAR01665.1| putative retrotransposon gag protein [Oryza sati... 441 e-121
gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cult... 433 e-119
ref|NP_909189.1| putative polyprotein [Oryza sativa (japonica cu... 420 e-115
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 711 bits (1835), Expect = 0.0
Identities = 391/1011 (38%), Positives = 587/1011 (57%), Gaps = 61/1011 (6%)
Query: 11 PIGGPLSPEIMAFPFPQGWARPKVKLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPM 70
P G P + +I+A P P W + LY+G +DP EH+N F M ++C+ FP
Sbjct: 207 PKGHPFTDDIIATPLPDKWRGLTINLYDGSTDPDEHLNIFRTQMTLYTTDRTVWCKVFPT 266
Query: 71 SLGKGPMNWFQNLPSNSLHDWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFL 130
SL +GP+ WF +LP NS+ ++ + F QY++ R ++ +L VKQ+ ESL+ F+
Sbjct: 267 SLREGPLGWFSDLPPNSIASFDALELKFTTQYATSRPHRTSSMSLLNVKQERGESLRTFM 326
Query: 131 NRFNKEAGDITGLLPDTRLVLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAV 190
NRF+K +I L P+ + +A+ PG F SL +P ++E RA KF+ +E+ +
Sbjct: 327 NRFSKVCMNIRNLNPEIAMHHLVSAILPGRFTESLIKRPPCNMDELRTRATKFMQIEEHI 386
Query: 191 TLRAASQTLAIKGPQKMKEHKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILRE 250
+ + ++ P+ R + + R P+ + +YTPL ++L E
Sbjct: 387 DYHRKTYAENTDNSKGIRP----PTIPTDRERHRPNRGPR---FHNYTPLIVPRGKVLDE 439
Query: 251 KASTDLRDRPPPLLTRGDKLDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVA 310
+L P T + SKR C++H + GH T+ C LKDK+EEL++AG L ++V
Sbjct: 440 ALQIELIPTLRPSQTPPNADTSKR-CQYHRNYGHTTEGCQALKDKIEELVQAGHLRKFVK 498
Query: 311 VSTGALPRPRSPPPRRTPTPPRHRDQTPPKRRSAERRDKTPP-------RRRSPERRRRS 363
+ A PRSP RD P + RS R D+T R+RS RR+
Sbjct: 499 TTITA---PRSP----------QRDHDP-RERSGRRDDRTRDNHYRSSRRKRSESPIRRT 544
Query: 364 RERRRSPDRHGRDEVRRQHGSNIV-----------DVGSIAGGWAAGGPTNNSQKRSTRV 412
R + SP+R R + + + N + ++ IAGG+A GG +N+++K+ R
Sbjct: 545 RPKSESPERRSRTKQKVRTVINTIAGPVSLGQPPQEINYIAGGFAGGGCSNSARKKHLRA 604
Query: 413 IMSAAGRPRPGSLHPPRQKVAITFTEDDYGEDTGEEDDPIVIEALIGNGKIRRTLIDTGS 472
I S P H P ITFT++D+ +DDP+VI I I + L+D GS
Sbjct: 605 IQSVHSTPTQRRPHIP----PITFTDEDFTAIDPSQDDPMVITVEIDKFAIAKVLVDQGS 660
Query: 473 SADIMFYDAYKSLGLSVKDLLPYDHDLVGFTGDRVLPLGYFDTCLSLGDHRICRTIKARF 532
S DI++++ +K + + ++ PY+ +VGF+ +RV G+ D + GD + +TI R+
Sbjct: 661 SVDILYWETFKKMKIPEAEIQPYNEQIVGFSRERVDTKGFIDLYTTFGDDYLSKTINIRY 720
Query: 533 LVVECPTAYNAILGRPSLNTFRAIISTHHLMLKYPWA-GRAVPVRGNLEMARSCYNSSCR 591
L+V T+YN +LGRPS+N +AI+ST HL +K+P G V + + AR CY +S +
Sbjct: 721 LLVNANTSYNILLGRPSINRLKAIVSTPHLAMKFPSVNGDIATVHIDQKTARECYVASLK 780
Query: 592 LA-----------REERKRKKSKAHDQNGNYHVQHANLLTDLDPRVDPSRDDHRLKPDGE 640
+ R +R +S G +H L DLDPR+D D R++ +
Sbjct: 781 VEPTRRLYTTSAERTTERRGRSTERRSRGRESRRHLVALVDLDPRLD----DPRMEAGED 836
Query: 641 SHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLFAWSSEDMPGIDPAFCSHRLSV 700
PI + + T + L D + + K L N LFAW++ DMPG+ +HRLSV
Sbjct: 837 LQPIFLRD-KDRKTYMGTSLKPDDRETIGKTLTKNADLFAWTAADMPGVKSDVITHRLSV 895
Query: 701 DRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKANGKWRMC 760
+ +P+AQKKR++ E+++ +++T +L++AG I++ YTTWL+NVV+VKK NGKWRMC
Sbjct: 896 YTEARPIAQKKRKLGEERRKAAREETDKLIQAGFIQKAHYTTWLANVVMVKKTNGKWRMC 955
Query: 761 VDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITD 820
VDYTDLNKACPKD +PLP+ID LVD ++G++ LS +DAYSGYNQI M+ D EKTAF TD
Sbjct: 956 VDYTDLNKACPKDSYPLPTIDRLVDGAAGHQILSFLDAYSGYNQIQMYHRDREKTAFRTD 1015
Query: 821 RGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVV 880
+ Y ++PFGLKNA ATYQR+M +F D++G++VEVY+DDI+VK+ H +DL V
Sbjct: 1016 SDNFFYEVMPFGLKNAGATYQRLMDHVFHDMIGRNVEVYVDDIVVKSDSCEQHVSDLKEV 1075
Query: 881 FEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQL 940
F+ L+++ MRLNP+KC FGV GKFLG+MLT+RGIE NP+KC+AI M+SP+ +KE+Q+L
Sbjct: 1076 FQALRQYRMRLNPEKCAFGVEGGKFLGFMLTHRGIEANPEKCKAITEMRSPKGLKEIQRL 1135
Query: 941 AGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFTQLKEILSSP 991
R+ ++ RF+PK A R P+ LLK + FEW+ E + F QLK L+SP
Sbjct: 1136 VSRLTSLSRFVPKLAERTRPIIKLLKKTSKFEWTDECEQNFQQLKAFLASP 1186
>gb|AAU44314.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2027
Score = 460 bits (1183), Expect = e-127
Identities = 315/974 (32%), Positives = 471/974 (48%), Gaps = 112/974 (11%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 238 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 297
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 298 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 357
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIK---GPQK 206
+ L + K T E A++ E+A T ++ +A G
Sbjct: 358 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNSSGSGVAASAAPGSAA 417
Query: 207 MKEHKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTR 266
D+ + S R G + + T S +E A T R+RP
Sbjct: 418 QTGRCDRRRKKRSDRSGDEGHVLAVEGAPRATRKGRPASDKKKE-AGTPSRERP------ 470
Query: 267 GDKLDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRR 326
+ R+C H++ H+ +C +K+ E
Sbjct: 471 -----AGRWCSVHNTSLHDLADCRAVKNLAE----------------------------- 496
Query: 327 TPTPPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GS 384
R + + R ERR+ P S +RR ++++ + D G D++ Q G+
Sbjct: 497 -------RTRKWEEDRRQERREGKSPAVPSGKRRSEAKQKAPAVDIDDGDDDLGFQEPGA 549
Query: 385 NIVDVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGE 443
I V G A + S K R +++ A P ++ R +VA+TF + D+
Sbjct: 550 TIATVD----GGACAQVSRRSFKAMKRELLAMA--PTHEAMRRARWSEVALTFDQTDHPP 603
Query: 444 DTGEEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDL 499
+V+ I N K+ R LID G++ +I+ +DA K+ G+ ++ P +
Sbjct: 604 CIARGGQVAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLQPSQP----I 659
Query: 500 VGFTGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIIST 559
+G T PLG+ D ++ G RT + F V + YNA+LGRP+L F A +
Sbjct: 660 IGVTPGHTWPLGHIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHY 719
Query: 560 HHLMLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLL 619
+L +K P G + VRG+L++A +C R +R SK
Sbjct: 720 AYLQMKMPGPGGPISVRGDLKVALACMEQ-----RADRLAAASK---------------- 758
Query: 620 TDLDPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARG--LPRDLSKRMEKLLLSNGK 677
P D RL P + P +A G +P D + L +N
Sbjct: 759 --------PEGGDERLGPSAPTAP---------RQRMATGDEVPEDA---LVSFLRANAD 798
Query: 678 LFAWSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIRE 737
+FAW DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IRE
Sbjct: 799 VFAWRPADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIRE 858
Query: 738 VKYTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMD 797
V + WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +D
Sbjct: 859 VIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLD 918
Query: 798 AYSGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVE 857
AYSGY+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE
Sbjct: 919 AYSGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVE 978
Query: 858 VYIDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIEL 917
Y+DD++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE
Sbjct: 979 AYVDDLVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEA 1038
Query: 918 NPDKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEA 977
NP+K +AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA
Sbjct: 1039 NPEKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEA 1098
Query: 978 DAAFTQLKEILSSP 991
+ A TQLK LSSP
Sbjct: 1099 EHALTQLKAYLSSP 1112
>gb|AAP53950.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534722|ref|NP_921663.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 2026
Score = 458 bits (1178), Expect = e-127
Identities = 311/972 (31%), Positives = 466/972 (46%), Gaps = 108/972 (11%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 237 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 296
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 297 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 356
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIK---GPQK 206
+ L + K T E A++ E+A T ++ +A G
Sbjct: 357 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNSSGSGVAASAAPGSAA 416
Query: 207 MKEHKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTR 266
+D+ + S R G + + T S +E A T R+RP
Sbjct: 417 QTGRRDRRRKKRSDRSGDEGHVLAVEGAPRATRKGRPASDKKKE-AGTPSRERP------ 469
Query: 267 GDKLDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRR 326
+ R+C H++ H+ +C +K+ E
Sbjct: 470 -----AGRWCSVHNTSLHDLADCRAVKNLAE----------------------------- 495
Query: 327 TPTPPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GS 384
R + + R ERR+ P S +RR ++++ + D G D++ Q G+
Sbjct: 496 -------RTRKWEEDRRQERREGKSPADPSGKRRSEAKQKAPAVDIDDGDDDLGFQEPGA 548
Query: 385 NIVDVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGE 443
I V G A + S K R ++ A P ++ R +VA+TF + D+
Sbjct: 549 TIATVD----GGACAHVSRRSFKAMKREFLAMA--PTHEAMRRARWSEVALTFDQTDHPP 602
Query: 444 DTGEEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDL 499
+V+ I N K+ R L+D G++ +I+ +DA K+ G+ ++ P +
Sbjct: 603 CIARGGQVAMVVSPTICNVKLGRVLVDGGAALNILSPAAFDAIKAPGMVLRPSQP----I 658
Query: 500 VGFTGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIIST 559
+G T PLG+ D ++ G RT + F V + YNA+LGRP+L F A +
Sbjct: 659 IGVTPGHTWPLGHIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHY 718
Query: 560 HHLMLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLL 619
+L +K P G + V G+L++A +C R +R SK
Sbjct: 719 AYLQMKMPGPGGPISVHGDLKVALACMEQ-----RADRLAAASK---------------- 757
Query: 620 TDLDPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLF 679
P D RL P + P +P D + L +N +F
Sbjct: 758 --------PEGGDERLGPSAPT-------APRQRIVTCDEVPEDA---LVSFLRANADVF 799
Query: 680 AWSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVK 739
AW DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV
Sbjct: 800 AWRPADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI 859
Query: 740 YTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAY 799
+ WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAY
Sbjct: 860 HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAY 919
Query: 800 SGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVY 859
SGY+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE Y
Sbjct: 920 SGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAY 979
Query: 860 IDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNP 919
+DD++VKT +DLA FE L+ M+LNPDKC FGV +GK LG++++ RGIE NP
Sbjct: 980 VDDLVVKTRNQETLLSDLAETFENLRSARMKLNPDKCVFGVPAGKLLGFLVSARGIEANP 1039
Query: 920 DKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADA 979
+K +AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+
Sbjct: 1040 EKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAEN 1099
Query: 980 AFTQLKEILSSP 991
A QLK LSSP
Sbjct: 1100 ALAQLKAYLSSP 1111
>ref|NP_908712.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2031
Score = 458 bits (1178), Expect = e-127
Identities = 309/969 (31%), Positives = 465/969 (47%), Gaps = 99/969 (10%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 239 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 298
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 299 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 358
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIKGPQKMKE 209
+ L + K T E A++ E+A T ++ +A
Sbjct: 359 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNSSGSGVAASAAPGSAA 418
Query: 210 HKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTRGDK 269
Q R+ RRK + +R + + R R+ D+ T G +
Sbjct: 419 ---QTGRRDRRRKKRSDRSGD----EGHVLAVEGAPRATRKGRPAS--DKKKEAGTPGRE 469
Query: 270 LDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRRTPT 329
+ R+C H + H+ +C +K+ E
Sbjct: 470 RPAGRWCSVHHTSLHDLADCRAVKNLAE-------------------------------- 497
Query: 330 PPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GSNIV 387
R + + R ERR+ P S +RR ++++ + D G D++ Q G+ I
Sbjct: 498 ----RTRKWEEDRRQERREGKSPAVPSGKRRGEAKQKAPAVDIDDGDDDLGFQEPGATIA 553
Query: 388 DVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGEDTG 446
V G A + S K R +++ A P ++ R +VA+TF + D+
Sbjct: 554 TVD----GGACAHVSRRSFKAMKRELLAMA--PTHEAMRRARWSEVALTFDQTDHPPCIA 607
Query: 447 EEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDLVGF 502
+V+ I N K+ R LID G++ +I+ +DA K+ G+ ++ P ++G
Sbjct: 608 RGGQVAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLQPSQP----IIGV 663
Query: 503 TGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIISTHHL 562
T PLG+ D ++ G RT + F V + YNA+LGRP+L F A + +L
Sbjct: 664 TPGHTWPLGHIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHYAYL 723
Query: 563 MLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLLTDL 622
+K P G + VRG+L++A +C R +R SK
Sbjct: 724 QMKMPGPGGPISVRGDLKVALACIEQ-----RADRLAAASK------------------- 759
Query: 623 DPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLFAWS 682
P D RL P + P +P + L +N +FAW
Sbjct: 760 -----PEGGDERLGPSAPT-------APRQRMATCDEVPVKEEDALVSFLRANADVFAWR 807
Query: 683 SEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTT 742
DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV +
Sbjct: 808 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPE 867
Query: 743 WLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGY 802
WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAYSGY
Sbjct: 868 WLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGY 927
Query: 803 NQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDD 862
+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE Y+DD
Sbjct: 928 HQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDD 987
Query: 863 IIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKC 922
++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP+K
Sbjct: 988 LVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKM 1047
Query: 923 QAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFT 982
+AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+ A
Sbjct: 1048 RAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAENALA 1107
Query: 983 QLKEILSSP 991
QLK LSSP
Sbjct: 1108 QLKAYLSSP 1116
>ref|NP_918386.1| B1064G04.18 [Oryza sativa (japonica cultivar-group)]
Length = 2030
Score = 458 bits (1178), Expect = e-127
Identities = 310/972 (31%), Positives = 467/972 (47%), Gaps = 105/972 (10%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 238 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 297
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 298 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 357
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIK---GPQK 206
+ L + K T E A++ E+A T ++ +A G
Sbjct: 358 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNSSGSGVAASAAPGSAA 417
Query: 207 MKEHKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTR 266
+D+ + S R G + + T S +E A T ++RP
Sbjct: 418 QTGRRDRRRKKRSDRSGDEGHVLAVEGAPRATRKGRPASDKKKE-AGTPSKERP------ 470
Query: 267 GDKLDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRR 326
+ R+C H++ H+ +C +K+ E
Sbjct: 471 -----AGRWCSVHNTSLHDLVDCRAVKNLAE----------------------------- 496
Query: 327 TPTPPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GS 384
R + + R ERR+ P S +RR ++++ + D G D++ Q G+
Sbjct: 497 -------RTRKWEEDRRQERREGKSPAVPSGKRRSEAKQKAPAVDIDDGDDDLGFQEPGA 549
Query: 385 NIVDVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGE 443
I V G A + S K R +++ A P ++ R +VA+TF + D+
Sbjct: 550 TIATVD----GGACAHVSRRSFKAMKRELLAMA--PTHEAMRRARWSEVALTFDQTDHPP 603
Query: 444 DTGEEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDL 499
+V+ I N K+ R LID G++ +I+ +DA K+ G+ ++ P +
Sbjct: 604 CIARGGQVAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLQPSQP----I 659
Query: 500 VGFTGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIIST 559
+G T PLG+ D ++ G RT + F V + YNA+LGRP+L F A +
Sbjct: 660 IGVTPGHTWPLGHIDLPVTFGGPANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHY 719
Query: 560 HHLMLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLL 619
+L +K P G + V G+L++A +C R +R SK
Sbjct: 720 AYLQMKMPGPGGPISVHGDLKVALACMEQ-----RADRLAAASK---------------- 758
Query: 620 TDLDPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLF 679
P D RL P + P +P + L +N +F
Sbjct: 759 --------PEGGDERLGPSAPT-------APRQRMATCDEVPVKEEDALVSFLRANADVF 803
Query: 680 AWSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVK 739
AW DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV
Sbjct: 804 AWRPADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI 863
Query: 740 YTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAY 799
+ WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAY
Sbjct: 864 HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAY 923
Query: 800 SGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVY 859
SGY+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE Y
Sbjct: 924 SGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAY 983
Query: 860 IDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNP 919
+DD++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP
Sbjct: 984 VDDLVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANP 1043
Query: 920 DKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADA 979
+K +AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+
Sbjct: 1044 EKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAEH 1103
Query: 980 AFTQLKEILSSP 991
A TQLK LSSP
Sbjct: 1104 ALTQLKAYLSSP 1115
>gb|AAU44275.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2027
Score = 458 bits (1178), Expect = e-127
Identities = 309/973 (31%), Positives = 466/973 (47%), Gaps = 110/973 (11%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 238 RPTIAEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMTLKGQARGWLMNLPPASVH 297
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++++ ESL++++ RF + I + +
Sbjct: 298 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRRDDESLRSYIQRFCQVRNTIPCIPAHAVI 357
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIKGPQKMKE 209
+ L + K T E A++ E+A T + +A
Sbjct: 358 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNPSGSGVAASAAPGSAA 417
Query: 210 HKDQPSTRESRR--KGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTRG 267
+ R +R + DE + S + +++AS R+RP
Sbjct: 418 QAGRRDRRRKKRSVRSDDEGHVLAVEGASRATRKGRPASDKKKEASVPSRERP------- 470
Query: 268 DKLDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRRT 327
+ ++C H++ H+ +C +K E
Sbjct: 471 ----TGKWCTVHNTSLHDLADCRAVKSLAE------------------------------ 496
Query: 328 PTPPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPDR---HGRDEVRRQH-G 383
R + + R ERR+ P P RRRS ++++P G D++ Q G
Sbjct: 497 ------RTRKWEEERRQERREGKSP--AVPSGRRRSEAKQKAPAEDIDDGDDDLGFQEPG 548
Query: 384 SNIVDVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYG 442
+ I V G A + S K R +++AA P + R +VA+TF + D+
Sbjct: 549 ATIATV----DGGACAHVSRRSLKAMKRELLAAA--PTHEATRRARWSEVALTFDQTDHP 602
Query: 443 EDTGEEDD-PIVIEALIGNGKIRRTLIDTGSSADIM---FYDAYKSLGLSVKDLLPYDHD 498
+V+ + N K+ R LID G++ +++ +DA K+ G+ ++ P
Sbjct: 603 PCVARGGQIAMVVSPTVCNVKLGRVLIDGGAALNVLSPAAFDAIKAPGMMLRPSQP---- 658
Query: 499 LVGFTGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIIS 558
++G T PLG+ D ++ G RT + F V + YNA+LGRP+L F A +
Sbjct: 659 IIGVTPGHTWPLGHIDLPVTFGGPANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVH 718
Query: 559 THHLMLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANL 618
+L +K P + V G+L +A +C R++R SK
Sbjct: 719 YAYLQMKMPCPDSPISVHGDLRVALACMEQ-----RKDRLAVVSK--------------- 758
Query: 619 LTDLDPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKL 678
P D RL G S P P + +P D + L +N +
Sbjct: 759 ---------PEGGDERL---GTSAP----AAPRQRIATSDEVPED---ALVSFLRANADV 799
Query: 679 FAWSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREV 738
FAW DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV
Sbjct: 800 FAWRPADMPGVPREVIEHRLAVRPSARPVRQKVRRQAPERQAFIREEVARLLEAGFIREV 859
Query: 739 KYTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDA 798
+ WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DA
Sbjct: 860 IHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDA 919
Query: 799 YSGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEV 858
YSGY+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE
Sbjct: 920 YSGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEA 979
Query: 859 YIDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELN 918
Y+DD++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE N
Sbjct: 980 YVDDLVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEAN 1039
Query: 919 PDKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEAD 978
P+K +AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+
Sbjct: 1040 PEKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAE 1099
Query: 979 AAFTQLKEILSSP 991
A TQLK SSP
Sbjct: 1100 RALTQLKAYFSSP 1112
>ref|XP_474025.1| OSJNBa0043L09.21 [Oryza sativa (japonica cultivar-group)]
gi|38344801|emb|CAE03002.2| OSJNBa0043L09.21 [Oryza
sativa (japonica cultivar-group)]
Length = 2028
Score = 457 bits (1177), Expect = e-126
Identities = 309/969 (31%), Positives = 468/969 (47%), Gaps = 102/969 (10%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 238 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 297
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 298 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 357
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIKGPQKMKE 209
+ L + K + T E A++ E+A T ++ +A
Sbjct: 358 YAFRGGVRHNRMLEKIASKESQTTAELFQLADRVARKEEAWTWNSSGSGVAASAAPGSAA 417
Query: 210 HKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTRGDK 269
Q R+ RRK ++P R + + R R+ D+ T +
Sbjct: 418 ---QTGRRDRRRK----KRPDRSGDEGHVLAVEGAPRATRKGRPAS--DKKNEAGTPSRE 468
Query: 270 LDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRRTPT 329
+ R+C H++ H+ +C +K+ E
Sbjct: 469 RLAGRWCSVHNTSLHDLADCRAVKNLAE-------------------------------- 496
Query: 330 PPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GSNIV 387
R + + R ERR+ P S +RR ++++ + D G D++ Q G+ I
Sbjct: 497 ----RTRKWEEDRRQERREGKSPAVPSGKRRSEAKQKAPAVDIDDGDDDLGFQEPGATIA 552
Query: 388 DVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGEDTG 446
V G A + S K R +++ A P ++ R +VA+TF + D+
Sbjct: 553 TVD----GGACAHVSRRSFKAMKRELLAMA--PTHEAMRRARWSEVALTFDQTDHPPCIA 606
Query: 447 EEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDLVGF 502
+ + I N K+ R LID G++ +I+ +DA K+ G+ ++ P ++G
Sbjct: 607 RGGQVAMAVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLQPSQP----IIGV 662
Query: 503 TGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIISTHHL 562
T PLG+ D ++ G RT + F V + YNA+LGRP+L F A + +L
Sbjct: 663 TPGHTWPLGHIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHYAYL 722
Query: 563 MLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLLTDL 622
+K P G + VRG+L++A +C R +R SK
Sbjct: 723 QMKMPGPGGPISVRGDLKVALACMEQ-----RADRLAAASK------------------- 758
Query: 623 DPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLFAWS 682
P D RL P + P +P D + L +N +FAW
Sbjct: 759 -----PEGGDERLGPSAPT-------APRQRMATCDEVPEDA---LVSFLRANADVFAWR 803
Query: 683 SEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTT 742
DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV +
Sbjct: 804 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPE 863
Query: 743 WLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGY 802
WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAYSGY
Sbjct: 864 WLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGY 923
Query: 803 NQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDD 862
+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE Y+DD
Sbjct: 924 HQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDD 983
Query: 863 IIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKC 922
++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP+K
Sbjct: 984 LVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKI 1043
Query: 923 QAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFT 982
+AI ++ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+ A T
Sbjct: 1044 RAIERIRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAEHALT 1103
Query: 983 QLKEILSSP 991
QLK LSSP
Sbjct: 1104 QLKAYLSSP 1112
>ref|NP_917356.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2028
Score = 457 bits (1177), Expect = e-126
Identities = 310/969 (31%), Positives = 467/969 (47%), Gaps = 102/969 (10%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 239 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 298
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 299 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 358
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIKGPQKMKE 209
+ L + K T E A++ E+A T ++ +A
Sbjct: 359 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNSSGSGVAASAAPGSAA 418
Query: 210 HKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTRGDK 269
Q R+ RRK + +R + + R R+ D+ T G +
Sbjct: 419 ---QTGRRDRRRKKRTDRSGD----EGHVLAVEGAPRATRKGRPAS--DKKKEAGTPGRE 469
Query: 270 LDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRRTPT 329
+ R+C H++ H+ +C +K+ E
Sbjct: 470 RPAGRWCSVHNTSLHDLADCRAVKNLAE-------------------------------- 497
Query: 330 PPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GSNIV 387
R + + R ERR+ P S +RR ++++ + D G D++ Q G+ I
Sbjct: 498 ----RTRKWEEDRRQERREGKSPVVPSGKRRGEAKQKAPAVDIDDGDDDLGFQEPGATIA 553
Query: 388 DVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGEDTG 446
V G A + S K R +++ A P ++ R +VA+TF + D+
Sbjct: 554 TVD----GGACAHVSRRSFKAMKRELLAMA--PTHEAMRRARWSEVALTFDQTDHPPCIA 607
Query: 447 EEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDLVGF 502
+V+ I N K+ R LID G++ +I+ +DA K+ G+ ++ P ++G
Sbjct: 608 RGGQVAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLQPSQP----IIGV 663
Query: 503 TGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIISTHHL 562
T PLG+ D ++ G RT + F V + YNA+LGRP+L F A + +L
Sbjct: 664 TPGHTWPLGHIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHYAYL 723
Query: 563 MLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLLTDL 622
+K P G + VRG+L++A +C R +R SK
Sbjct: 724 QMKMPGPGGPISVRGDLKVALACIEQ-----RADRLAAASK------------------- 759
Query: 623 DPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLFAWS 682
P D RL P + P +P D + L +N +FAW
Sbjct: 760 -----PEGGDERLGPSAPT-------APRQRMATCDEVPEDA---LVSFLRANADVFAWR 804
Query: 683 SEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTT 742
DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV +
Sbjct: 805 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPE 864
Query: 743 WLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGY 802
WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAYSGY
Sbjct: 865 WLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGY 924
Query: 803 NQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDD 862
+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE Y+DD
Sbjct: 925 HQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDD 984
Query: 863 IIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKC 922
++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP+K
Sbjct: 985 LVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKI 1044
Query: 923 QAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFT 982
+AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+ A
Sbjct: 1045 RAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAENALA 1104
Query: 983 QLKEILSSP 991
QLK LSSP
Sbjct: 1105 QLKAYLSSP 1113
>gb|AAV25049.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1869
Score = 456 bits (1174), Expect = e-126
Identities = 307/971 (31%), Positives = 462/971 (46%), Gaps = 103/971 (10%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 111 RPTIAEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 170
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++++ ESL++++ RF + I + +
Sbjct: 171 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRRDDESLRSYIQRFCQVRNTIPCIPAHAVI 230
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIKGPQKMKE 209
+ L + K T E A++ E+A T + +A
Sbjct: 231 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNPSGSGVAASAAPGSTA 290
Query: 210 HKDQPSTRESRRK--GQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTRG 267
+ R +R DE + S + ++KA R+RP
Sbjct: 291 QTGRRDRRRKKRSVHSDDEGHVLAVEGASRATQKGRPASDKKKKAGAPSRERP------- 343
Query: 268 DKLDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRRT 327
+ ++C H++ H+ +C +K E
Sbjct: 344 ----ASKWCTVHNTSLHDLADCRAVKSLAE------------------------------ 369
Query: 328 PTPPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GSN 385
R + + R ERR+ P S RR ++++ + D G D++ Q G+
Sbjct: 370 ------RTRKWEEERRQERREGKSPAVPSGNRRSEAKQKAPAEDIDDGDDDLGFQEPGAT 423
Query: 386 IVDVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGED 444
I V G A + S K R +++AA P + R +VA+TF + D+
Sbjct: 424 IATVD----GGACAHVSRRSLKAMKRELLAAA--PTHEATRRARWSEVALTFDQTDHPPC 477
Query: 445 TGEEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDLV 500
+V+ + N K+ R LID G++ +I+ +DA K+LG+ ++ P ++
Sbjct: 478 VARGGQIAMVVSPTVCNVKLGRVLIDGGAALNILSPAAFDAIKALGMMLRPSQP----II 533
Query: 501 GFTGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIISTH 560
G T PLG+ D ++ G RT + F V + YNA+LGRP+L F A +
Sbjct: 534 GVTPGHTWPLGHIDLPVTFGGPANFRTERVNFDVADLSPPYNAVLGRPALVKFMAAVHYA 593
Query: 561 HLMLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLLT 620
+L +K P + V G+L++A +C R +R SK
Sbjct: 594 YLQMKMPGPDGPISVHGDLKVALACMEQ-----RADRLAVVSK----------------- 631
Query: 621 DLDPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLFA 680
P D RL G S P P +P + L +N +FA
Sbjct: 632 -------PEGGDERL---GTSAPA----TPRQRIVTCDEVPVKEEDALVSFLRANADVFA 677
Query: 681 WSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKY 740
W DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV +
Sbjct: 678 WRPADMPGVPREVIEHRLAVRPDARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIH 737
Query: 741 TTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYS 800
WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAYS
Sbjct: 738 PEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYS 797
Query: 801 GYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYI 860
GY+QI M R+DEEKT FIT GTYCYT +PFGL+NA T QR+ G +G++VE Y+
Sbjct: 798 GYHQIRMAREDEEKTTFITPIGTYCYTTMPFGLRNAGPTIQRITRISLGSQLGRNVEAYV 857
Query: 861 DDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPD 920
DD++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP+
Sbjct: 858 DDLVVKTRNQETLLSDLAETFESLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPE 917
Query: 921 KCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAA 980
K +AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+ A
Sbjct: 918 KIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAERA 977
Query: 981 FTQLKEILSSP 991
TQLK LSSP
Sbjct: 978 LTQLKAYLSSP 988
>emb|CAE05339.2| OSJNBa0079M09.11 [Oryza sativa (japonica cultivar-group)]
gi|50922715|ref|XP_471718.1| OSJNBa0079M09.11 [Oryza
sativa (japonica cultivar-group)]
Length = 2028
Score = 456 bits (1173), Expect = e-126
Identities = 310/969 (31%), Positives = 465/969 (46%), Gaps = 102/969 (10%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 239 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 298
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 299 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 358
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIKGPQKMKE 209
+ L + K T E A++ E+A T ++ A
Sbjct: 359 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNSSGSGAAASAAPGSAA 418
Query: 210 HKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTRGDK 269
Q R+ RRK + +R + + R R+ D+ T G +
Sbjct: 419 ---QTGRRDRRRKKRSDRSGD----EGHVLAVEGAPRATRKGRPAS--DKKKEAGTPGRE 469
Query: 270 LDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRRTPT 329
+ R+C H++ H+ +C +K+ E
Sbjct: 470 RPAGRWCSVHNTSLHDLADCRAVKNLAE-------------------------------- 497
Query: 330 PPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GSNIV 387
R + + R ERR+ P S +RR ++++ D G D++ Q G+ I
Sbjct: 498 ----RTRKWEEDRRQERREGKSPVVPSGKRRGEAKQKAPVVDIDDGDDDLGFQEPGATIA 553
Query: 388 DVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGEDTG 446
V G A + S K R +++ A P ++ R +VA+TF + D+
Sbjct: 554 TVD----GGACAHVSRRSFKAMKRELLAMA--PTHEAMRRARWSEVALTFDQTDHPPCIA 607
Query: 447 EEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDLVGF 502
+V+ I N K+ R LID G++ +I+ +DA K+ G+ ++ P ++G
Sbjct: 608 RGGQVAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLQPSQP----IIGV 663
Query: 503 TGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIISTHHL 562
T PLG+ D ++ G RT + F V + YNA+LGRP+L F A + +L
Sbjct: 664 TPGHTWPLGHIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHYAYL 723
Query: 563 MLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLLTDL 622
+K P G + VRG+L++A +C R +R SK
Sbjct: 724 QMKMPGPGGPISVRGDLKVALACIEQ-----RADRLAAASK------------------- 759
Query: 623 DPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLFAWS 682
P D RL P + P +P D + L +N +FAW
Sbjct: 760 -----PEGGDERLGPSAPT-------APRQRMATCDEVPEDA---LVSFLRANADVFAWR 804
Query: 683 SEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTT 742
DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV +
Sbjct: 805 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPE 864
Query: 743 WLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGY 802
WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAYSGY
Sbjct: 865 WLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGY 924
Query: 803 NQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDD 862
+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE Y+DD
Sbjct: 925 HQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDD 984
Query: 863 IIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKC 922
++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP+K
Sbjct: 985 LVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKI 1044
Query: 923 QAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFT 982
+AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+ A
Sbjct: 1045 RAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAENALA 1104
Query: 983 QLKEILSSP 991
QLK LSSP
Sbjct: 1105 QLKAYLSSP 1113
>ref|XP_471558.1| OSJNBa0019J05.19 [Oryza sativa (japonica cultivar-group)]
gi|38346434|emb|CAD40221.2| OSJNBa0019J05.19 [Oryza
sativa (japonica cultivar-group)]
Length = 1969
Score = 455 bits (1171), Expect = e-126
Identities = 316/980 (32%), Positives = 468/980 (47%), Gaps = 124/980 (12%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 238 RPTIAEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 297
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++++ ESL++++ RF + I + +
Sbjct: 298 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRRDDESLRSYIQRFCQVRNTIPCIPAHAVI 357
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIKGPQKMKE 209
+ L + K T E A++ E+A T + +A
Sbjct: 358 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNPSGSGVAASAAPGSAA 417
Query: 210 HKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILRE---------KASTDLRDRP 260
Q R+ RRK ++ + + SR R+ +AS R+RP
Sbjct: 418 ---QAGRRDRRRK----KRSVHSDNEGHVLAVEGASRATRKGRPASDKKKEASVPSRERP 470
Query: 261 PPLLTRGDKLDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPR 320
+ ++C H++ H+ +C +K E
Sbjct: 471 -----------TGKWCTVHNTSLHDLADCRAVKSLAE----------------------- 496
Query: 321 SPPPRRTPTPPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPDRH---GRDE 377
R + + R ERR+ P P RRRS R+++P G D+
Sbjct: 497 -------------RTRKWEEERRQERREGKSPA--VPSGRRRSEARQKAPAEDIDDGDDD 541
Query: 378 VRRQH-GSNIVDVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAIT 435
+ Q G+ I V G A + S K R +++AA P + R +VA+T
Sbjct: 542 LGFQEPGATIATVD----GGACAHVSRRSLKAMKRELLAAA--PTHEATRRARWSEVALT 595
Query: 436 FTEDDYGEDTGEEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKD 491
F + D+ +V+ I N K+ R LID G++ +I+ +DA K+ G+ ++
Sbjct: 596 FDQTDHPPCVAWGGQIAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMMLRP 655
Query: 492 LLPYDHDLVGFTGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLN 551
P ++G T PLG+ D ++ G RT + F V + YNA+LGRP+L
Sbjct: 656 SQP----IIGVTPGHTWPLGHIDLPVTFGGPANFRTERVNFDVADLSLPYNAVLGRPALV 711
Query: 552 TFRAIISTHHLMLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNY 611
F A + +L +K P + V G+L++A +C R +R SK
Sbjct: 712 KFMAAVHYAYLQMKMPGPDGPISVHGDLKVALACMEQ-----RADRLAVVSK-------- 758
Query: 612 HVQHANLLTDLDPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKL 671
P D RL G S P P + +P D +
Sbjct: 759 ----------------PEGGDERL---GTSAPA----APRQRIVTSDEVPEDA---LVSF 792
Query: 672 LLSNGKLFAWSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLR 731
L +N +FAW DMPG+ HRL+V +PV QK R+ + E+Q I+ + LL
Sbjct: 793 LRANADVFAWRPADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIRVEVARLLE 852
Query: 732 AGIIREVKYTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYE 791
AG IREV + WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G +
Sbjct: 853 AGFIREVIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCD 912
Query: 792 YLSLMDAYSGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDL 851
L +DAYSGY+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G
Sbjct: 913 LLCFLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQ 972
Query: 852 MGKSVEVYIDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLT 911
+G++VE Y+DD++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++
Sbjct: 973 LGRNVEAYVDDLVVKTRNQETLLSDLAETFESLRSARIKLNPDKCVFGVPAGKLLGFLVS 1032
Query: 912 NRGIELNPDKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATF 971
RGIE NP+K +AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F
Sbjct: 1033 ARGIEANPEKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPF 1092
Query: 972 EWSAEADAAFTQLKEILSSP 991
W+ EA+ A TQLK LSSP
Sbjct: 1093 TWTEEAERALTQLKAYLSSP 1112
>ref|NP_908894.1| putative GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
Length = 2027
Score = 455 bits (1171), Expect = e-126
Identities = 309/968 (31%), Positives = 467/968 (47%), Gaps = 102/968 (10%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 238 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 297
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 298 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 357
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIKGPQKMKE 209
+ L + K T E A++ E+A T ++ +A
Sbjct: 358 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNSSGSGVAASAAPGSAA 417
Query: 210 HKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTRGDK 269
Q R+ RRK ++P R + + R R+ D+ T +
Sbjct: 418 ---QTGRRDRRRK----KRPDRSGDEGHVLAVEGAPRATRKGRPAS--DKKNEAGTPSRE 468
Query: 270 LDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRRTPT 329
+ R+C H++ H+ +C +K+ E
Sbjct: 469 RLAGRWCSVHNTSLHDLADCRAVKNLAE-------------------------------- 496
Query: 330 PPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GSNIV 387
R + + R ERR+ P S +RR ++++ + D G D++ Q G+ I
Sbjct: 497 ----RTRKWEEDRRQERREGKSPAVPSGKRRSEAKQKAPAVDIDDGDDDLGFQEPGATIA 552
Query: 388 DVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGEDTG 446
V G A + S K R +++ A P ++ R +VA+TF + D+
Sbjct: 553 TVD----GGACAHVSRRSFKAMKRELLAMA--PTHEAMRRARWSEVALTFDQTDHPPCIA 606
Query: 447 EEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDLVGF 502
+V+ I N K+ R LID G++ +I+ +DA K+ G+ ++ P ++G
Sbjct: 607 RGGQVAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLQPSQP----IIGV 662
Query: 503 TGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIISTHHL 562
T PLG+ D ++ G RT + F V + YNA+LGRP+L F A + +L
Sbjct: 663 TPGHTWPLGHIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHYAYL 722
Query: 563 MLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLLTDL 622
+K P G + VRG+L++A +C R +R SK
Sbjct: 723 QMKMPGLGGPISVRGDLKVALACMEQ-----RADRLAAASK------------------- 758
Query: 623 DPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLFAWS 682
P D RL P + P +P D + L +N +FAW
Sbjct: 759 -----PEGGDERLGPSAPT-------APRQRMATCDEVPEDA---LVSFLRANADVFAWR 803
Query: 683 SEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTT 742
DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV +
Sbjct: 804 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPE 863
Query: 743 WLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGY 802
WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAYSGY
Sbjct: 864 WLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGY 923
Query: 803 NQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDD 862
+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE Y+DD
Sbjct: 924 HQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDD 983
Query: 863 IIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKC 922
++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP+K
Sbjct: 984 LVVKTRDQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKI 1043
Query: 923 QAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFT 982
+AI ++ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+ A T
Sbjct: 1044 RAIERIRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAEHALT 1103
Query: 983 QLKEILSS 990
QLK LSS
Sbjct: 1104 QLKAYLSS 1111
>ref|NP_918342.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2030
Score = 455 bits (1171), Expect = e-126
Identities = 307/972 (31%), Positives = 463/972 (47%), Gaps = 105/972 (10%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 238 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 297
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 298 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 357
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIK---GPQK 206
+ L + K T E A++ E+A T + +A G
Sbjct: 358 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNPSGSGVAASAAPGSAA 417
Query: 207 MKEHKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTR 266
+D+ + S G + + T S +E A T R+RP
Sbjct: 418 QTGRRDRRRKKRSAHSGDEGHVLAVESAPRATRKGRPASDKKKE-AGTPSRERPV----- 471
Query: 267 GDKLDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRR 326
++C H++ H+ +C +K+ E
Sbjct: 472 ------SKWCSVHNTSLHDLADCRAVKNLAE----------------------------- 496
Query: 327 TPTPPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPDRHGRDEVR--RQHGS 384
R + + R ERR+ P S +RR ++++ + D D+ ++ G+
Sbjct: 497 -------RTRKWEEDRRQERREGKSPAVPSGKRRSEAKQKAPAVDIDDGDDGLGFQEPGA 549
Query: 385 NIVDVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGE 443
I V G A + S K R +++ A P ++ R +VA+TF + D+
Sbjct: 550 TIATVD----GGACAHVSRRSFKAMKRELLAMA--PTHEAMRRARWSEVALTFDQTDHPP 603
Query: 444 DTGEEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDL 499
+V+ I N K+ R LID G++ +I+ +DA K+ G+ ++ P +
Sbjct: 604 CIARGGQVAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLRPSQP----I 659
Query: 500 VGFTGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIIST 559
+G T PLG+ D ++ G RT + F V + YNA+LGRP+L F A +
Sbjct: 660 IGVTPGHTWPLGHIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHY 719
Query: 560 HHLMLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLL 619
+L +K P G + V G+L++A +C R +R SK
Sbjct: 720 AYLQMKMPGPGGPISVHGDLKVALACMEQ-----RADRLAAASK---------------- 758
Query: 620 TDLDPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLF 679
P D RL P + P +P + L +N +F
Sbjct: 759 --------PEGGDERLGPSAPT-------APRQRIATCDEVPVKEEDALVSFLRANADVF 803
Query: 680 AWSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVK 739
AW DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV
Sbjct: 804 AWRPADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI 863
Query: 740 YTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAY 799
+ WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAY
Sbjct: 864 HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAY 923
Query: 800 SGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVY 859
SGY+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE Y
Sbjct: 924 SGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAY 983
Query: 860 IDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNP 919
+DD++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP
Sbjct: 984 VDDLVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANP 1043
Query: 920 DKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADA 979
+K +AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+
Sbjct: 1044 EKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAEH 1103
Query: 980 AFTQLKEILSSP 991
A TQLK LSSP
Sbjct: 1104 ALTQLKVYLSSP 1115
>gb|AAK55774.1| Putative polyprotein [Oryza sativa]
Length = 2027
Score = 454 bits (1169), Expect = e-126
Identities = 308/972 (31%), Positives = 463/972 (46%), Gaps = 108/972 (11%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 238 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 297
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 298 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 357
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIK---GPQK 206
+ L + K T E A++ E+A T + +A G
Sbjct: 358 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNPSGSGVAASAAPGSAA 417
Query: 207 MKEHKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTR 266
+D+ + S G + + T S +E A R+RP
Sbjct: 418 QTGRRDRRRKKRSVHSGDEGHVLAVEGAPRATRKGRPASDKKKE-AGAPSRERP------ 470
Query: 267 GDKLDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRR 326
+ ++C H++ H+ +C +K+ E
Sbjct: 471 -----AGKWCSVHNTSLHDLADCRAVKNLAE----------------------------- 496
Query: 327 TPTPPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPDRHGRDEVR--RQHGS 384
R + + R ERR+ P S RRR ++++ + D G D+ ++ G+
Sbjct: 497 -------RTKKWEEDRRQERRENKSPAVLSGNRRREAKQKAPAEDIDGDDDDLGFQEPGA 549
Query: 385 NIVDVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGE 443
I V G A + S K R +++A P + R +VA+TF + D+
Sbjct: 550 TIATVD----GGACAHVSRRSFKAMKRELLAAV--PTHEATRRARWSEVALTFDQTDHPP 603
Query: 444 DTGEEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDL 499
+V+ I N K+ R LID G++ +I+ +DA K+ G+ ++ P +
Sbjct: 604 CVARGGQIAMVVSPTICNVKLGRVLIDGGTALNILSPAAFDAIKAPGMVLRPSQP----I 659
Query: 500 VGFTGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIIST 559
+G T PLG+ D ++ G RT + F V + YNA+LGRP+L F A +
Sbjct: 660 IGVTPGHTWPLGHIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHY 719
Query: 560 HHLMLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLL 619
+L +K P G + V G+L++A +C R + SK
Sbjct: 720 AYLQMKMPGPGGPISVHGDLKVALACMEQ-----RADHLAAASK---------------- 758
Query: 620 TDLDPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLF 679
P D RL G S P P + +P D + L +N +F
Sbjct: 759 --------PEGGDERL---GTSAPT----APRQRIDTCDDVPEDA---LVSFLRANADVF 800
Query: 680 AWSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVK 739
AW DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV
Sbjct: 801 AWRPADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI 860
Query: 740 YTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAY 799
+ WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAY
Sbjct: 861 HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAY 920
Query: 800 SGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVY 859
SGY+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+Q G +G++VE Y
Sbjct: 921 SGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQHTTRISLGSQIGRNVEAY 980
Query: 860 IDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNP 919
+DD++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP
Sbjct: 981 VDDLVVKTRNQETFLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANP 1040
Query: 920 DKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADA 979
+K +AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+
Sbjct: 1041 EKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAER 1100
Query: 980 AFTQLKEILSSP 991
A QLK LSSP
Sbjct: 1101 ALAQLKAYLSSP 1112
>gb|AAX96661.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 2027
Score = 454 bits (1167), Expect = e-125
Identities = 313/972 (32%), Positives = 466/972 (47%), Gaps = 108/972 (11%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 238 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 297
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 298 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 357
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIK---GPQK 206
+ L + K T E A++ E+A T + +A G
Sbjct: 358 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNPSGSGVAASAAPGSAA 417
Query: 207 MKEHKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTR 266
+D+ + S G + + T S +E A T R+RP
Sbjct: 418 QTGRRDRRRKKRSVHSGDEGHVLAVEGAPRATRKGRPASDKKKE-AGTPSRERP------ 470
Query: 267 GDKLDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRR 326
+ ++C H++ H+ +C +K+ E
Sbjct: 471 -----ASKWCSVHNTSLHDLADCRAVKNLAE----------------------------- 496
Query: 327 TPTPPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GS 384
R + + R ERR+ S +RR +R++ + D G D++ Q G+
Sbjct: 497 -------RTRKWEEDRRQERREGKSAAVPSGKRRSEARQKAPAVDIDDGDDDLGFQEPGA 549
Query: 385 NIVDVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGE 443
I V G A + S K R +++AA P + R +VA+TF + D+
Sbjct: 550 TIATVD----GGACAHVSRRSFKAMRRELLAAA--PTHEATRRARWSEVALTFDQTDHPP 603
Query: 444 DTGEEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDL 499
+V+ I N K+ R LID G++ +I+ +DA K+ G+ ++ P +
Sbjct: 604 CVARGGQIAMVVSPTICNVKLGRVLIDGGAALNILSPVAFDAIKAPGMVLQPSQP----I 659
Query: 500 VGFTGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIIST 559
+G T PLG+ D ++ G RT + F V + YNA+LGRP+L F A +
Sbjct: 660 IGVTPGHTWPLGHIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHY 719
Query: 560 HHLMLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLL 619
+L +K P + VRG+L++A +C QHA+ L
Sbjct: 720 AYLQMKMPGPCGPISVRGDLKVALACME--------------------------QHADHL 753
Query: 620 TDLDPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLF 679
P D RL G S P P +P D + L +N +F
Sbjct: 754 A---AATKPEGGDERL---GTSAPT----APRQRIATCDEVPEDA---LVSFLRANADVF 800
Query: 680 AWSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVK 739
AW DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV
Sbjct: 801 AWRPADMPGVPRELIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI 860
Query: 740 YTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAY 799
+ WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAY
Sbjct: 861 HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAY 920
Query: 800 SGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVY 859
SGY+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE Y
Sbjct: 921 SGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAY 980
Query: 860 IDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNP 919
+DD++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP
Sbjct: 981 VDDLVVKTRNQETLLSDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANP 1040
Query: 920 DKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADA 979
+K +AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+
Sbjct: 1041 EKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAEH 1100
Query: 980 AFTQLKEILSSP 991
A TQLK LSSP
Sbjct: 1101 ALTQLKAYLSSP 1112
>gb|AAO66535.1| transposon protein, putative, unclassified [Oryza sativa (japonica
cultivar-group)] gi|50920157|ref|XP_470439.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2026
Score = 452 bits (1163), Expect = e-125
Identities = 310/972 (31%), Positives = 466/972 (47%), Gaps = 108/972 (11%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NL S+H
Sbjct: 237 RPTITEKYDGSVNPTEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLSPASVH 296
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++ + ESL++++ RF + I + +
Sbjct: 297 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVI 356
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIK---GPQK 206
+ L + K T E A++ E+A T ++ +A G
Sbjct: 357 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNSSGSGVAASAAPGSAA 416
Query: 207 MKEHKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTR 266
+D+ + S R G + + T S +E A T R+RP
Sbjct: 417 QTGRRDRRRKKRSDRSGDEGHVLAVEGAPRATRKGRPASDKKKE-AGTPSRERP------ 469
Query: 267 GDKLDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRR 326
+ R+C H++ H+ +C +K+ E
Sbjct: 470 -----AGRWCSVHNTSLHDLADCRAVKNLAE----------------------------- 495
Query: 327 TPTPPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GS 384
R + + R ERR+ P S +RR ++++ + D G D++ Q G+
Sbjct: 496 -------RTRKWEEDRRQERREGKFPAVPSGKRRSEAKQKAPAVDIDDGDDDLGFQEPGA 548
Query: 385 NIVDVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGE 443
I V G A + S K R +++ A P ++ R +VA+TF + D+
Sbjct: 549 TIATVD----GGACAHVSRRSFKAMKRELLAMA--PTHEAMRRARWSEVALTFDQTDHPP 602
Query: 444 DTGEEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDL 499
+V+ I N K+ R LID G++ +I+ +DA K+ G+ ++ P +
Sbjct: 603 CIARGGQVAMVVSPTICNVKLGRVLIDGGAALNILSPVAFDAIKAPGMVLRPSQP----I 658
Query: 500 VGFTGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIIST 559
+G T PLG+ D ++ G RT + F V + YNA+LGRP+L F A +
Sbjct: 659 IGVTPGHTWPLGHIDLPVTFGGPANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHY 718
Query: 560 HHLMLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLL 619
+L +K P G + V G+L++A +C R +R SK
Sbjct: 719 AYLQMKMPGPGGPISVHGDLKVALACMEQ-----RTDRLAAASK---------------- 757
Query: 620 TDLDPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLF 679
P D RL P + P +P D + L +N +F
Sbjct: 758 --------PEGGDERLGPSAPT-------APRQRIATYDEVPEDA---LVSFLRANADVF 799
Query: 680 AWSSEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVK 739
AW DMPG+ HRL+V +PV QK R+ + E+Q I+++ LL AG IREV
Sbjct: 800 AWRPADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI 859
Query: 740 YTTWLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAY 799
+ WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAY
Sbjct: 860 HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAY 919
Query: 800 SGYNQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVY 859
SGY+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE Y
Sbjct: 920 SGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAY 979
Query: 860 IDDIIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNP 919
+DD++VKT DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP
Sbjct: 980 VDDLVVKTRNQETLLLDLAETFENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANP 1039
Query: 920 DKCQAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADA 979
+K +AI ++ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+
Sbjct: 1040 EKIRAIERIRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAEH 1099
Query: 980 AFTQLKEILSSP 991
A TQLK LSSP
Sbjct: 1100 ALTQLKAYLSSP 1111
>ref|XP_470984.1| OSJNBb0004G23.13 [Oryza sativa (japonica cultivar-group)]
gi|38346879|emb|CAE04615.2| OSJNBb0004G23.13 [Oryza
sativa (japonica cultivar-group)]
gi|32488418|emb|CAE02761.1| OSJNBb0085F13.8 [Oryza sativa
(japonica cultivar-group)]
Length = 1932
Score = 451 bits (1160), Expect = e-124
Identities = 309/969 (31%), Positives = 464/969 (46%), Gaps = 102/969 (10%)
Query: 31 RPKV-KLYEGDSDPQEHVNFFVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLH 89
RP + + Y+G +P E + + ++ AG D + FPM+L W NLP S+H
Sbjct: 238 RPTIAEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVH 297
Query: 90 DWNGVVTCFLAQYSSVRSIPKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRL 149
W + F + P L V++++ ESL +++ RF + I + +
Sbjct: 298 SWEDLCQQFTMNFQGTYPRPGEEADLHAVQRRDDESLHSYIQRFCQVRNTIPCIPAHAVI 357
Query: 150 VLATAALAPGPFLTSLDGKPANTLEEFLARAEKFINMEDAVTLRAASQTLAIKGPQKMKE 209
+ L + K T E A++ E+A T + +A
Sbjct: 358 YAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEACTWNPSGSGVAASAAPGS-- 415
Query: 210 HKDQPSTRESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTRGDK 269
+ R RR + +++ + + SR R+ + + +R ++
Sbjct: 416 -----AARTGRRDRRRKKRSAHSDDEGHVLAVEGASRATRKGRPASDKKKEAGAPSR-ER 469
Query: 270 LDSKRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRRTPT 329
L K +C H++ H+ +C +K E
Sbjct: 470 LTGK-WCIVHNTSLHDLADCRAVKSLAE-------------------------------- 496
Query: 330 PPRHRDQTPPKRRSAERRDKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GSNIV 387
R + + R ERR+ P S RR ++++ + D G D++ Q G+ I
Sbjct: 497 ----RTRKWEEERRQERREGKSPAVPSGNRRSEAKQKAPAEDIDDGDDDLGFQEPGATIA 552
Query: 388 DVGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGEDTG 446
V G A + S K R +++AA P + R +VA+TF + D+
Sbjct: 553 TVD----GGACAHVSRWSLKAMKRELLAAA--PTHEATRRARWSEVALTFDQTDHPPCVA 606
Query: 447 EEDD-PIVIEALIGNGKIRRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDLVGF 502
+V+ + N K+ R LID G++ +I+ +DA K+ G+ ++ P ++G
Sbjct: 607 RGGQIAMVVSPTVCNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLRPSQP----IIGV 662
Query: 503 TGDRVLPLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIISTHHL 562
T PLG+ D ++ G RT + F V + YNA+LGRP+L F A + +L
Sbjct: 663 TPGHTWPLGHIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAYL 722
Query: 563 MLKYPWAGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLLTDL 622
+K P G + V G+L++A +C Q AN LT
Sbjct: 723 QMKMPGPGGPISVHGDLKVALACME--------------------------QRANHLTAA 756
Query: 623 DPRVDPSRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLFAWS 682
P D RL G S P P +P D + L +N +FAW
Sbjct: 757 SK---PKGGDERL---GTSAPA----APRQRIVTCDEVPEDA---LVSFLRANAHVFAWR 803
Query: 683 SEDMPGIDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTT 742
DMPG+ HRL+V + V QK R+ + E+Q I+++ LL AG IREV +
Sbjct: 804 PADMPGVPREVIEHRLAVRSGARLVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPE 863
Query: 743 WLSNVVLVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGY 802
WL+N V+V KANGK RMC+DYTDLNKACPKDP+PLP ID VD+++G + L +DAYSGY
Sbjct: 864 WLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQFVDSTAGCDLLCFLDAYSGY 923
Query: 803 NQIPMHRDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDD 862
+QI M R+DEEKTAFIT GTYCYT +PFGLKNA T+QR G +G++VE Y+DD
Sbjct: 924 HQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDD 983
Query: 863 IIVKTPKGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKC 922
++VKT +DLA FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP+K
Sbjct: 984 LVVKTRNQETLLSDLAETFESLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKI 1043
Query: 923 QAIMNMKSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFT 982
+AI M+ P +++VQ + G MAA+ RF+ + +ALPL+ LLK F W+ EA+ A T
Sbjct: 1044 RAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAERALT 1103
Query: 983 QLKEILSSP 991
QLK LSSP
Sbjct: 1104 QLKAYLSSP 1112
>gb|AAR01665.1| putative retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)] gi|13236667|gb|AAK16189.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50918851|ref|XP_469822.1| putative retrotransposon
gag protein [Oryza sativa (japonica cultivar-group)]
Length = 1867
Score = 441 bits (1134), Expect = e-121
Identities = 297/951 (31%), Positives = 452/951 (47%), Gaps = 102/951 (10%)
Query: 50 FVGAMQYAGASDPLYCRCFPMSLGKGPMNWFQNLPSNSLHDWNGVVTCFLAQYSSVRSIP 109
FV +++ + FPM+L W NLP S+H W + F + P
Sbjct: 224 FVASLRNVRWPPRVMANFFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRP 283
Query: 110 KTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRLVLATAALAPGPFLTSLDGKP 169
L V++ + ESL++++ RF + I + + + L + K
Sbjct: 284 GEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVIYAFRGGVRHNRMLEKIASKE 343
Query: 170 ANTLEEFLARAEKFINMEDAVTLRAASQTLAIKGPQKMKEHKDQPSTRESRRKGQDERKP 229
T E A++ E+A T ++ + P+ R RR + +++
Sbjct: 344 PQTTSELFQLADRVARKEEAWTWNSSGSGVTAPAAPG-------PAARSGRRDRRRKKRS 396
Query: 230 KRKKYDSYTPLNSSLSRILRE--KASTDLRDRPPPLLTRGDKLDSKRFCEFHDSPGHNTD 287
+ + SR+ ++ AS ++ P R + ++C H++ H+
Sbjct: 397 AHSDDEGHVLAVEGASRVTQKGRPASDKKKEAGAPSRER----PTGKWCTVHNTSLHDLA 452
Query: 288 ECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRRTPTPPRHRDQTPPKRRSAERR 347
+C +K E R + + R ERR
Sbjct: 453 DCRAVKSLAE------------------------------------RTRKWEEERRQERR 476
Query: 348 DKTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GSNIVDVGSIAGGWAAGGPTNNS 405
+ P S RR ++++ + D G D++ Q G+ I V G A + S
Sbjct: 477 EGKAPAAPSGNRRSEAKQKAPAEDIDDGDDDLGFQEPGATIATVD----GGACAHASRRS 532
Query: 406 QKRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGEDTGEEDD-PIVIEALIGNGKI 463
K R +++AA P + R +VA+TF + D+ +V+ + N K+
Sbjct: 533 LKAMKRELLAAA--PTHEATRRARWSEVALTFDQTDHPPCVARGGQIAMVVSPTVCNVKL 590
Query: 464 RRTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDLVGFTGDRVLPLGYFDTCLSLG 520
R LID G++ +I+ +DA K+ G+ ++ P ++G T PLG+ D ++ G
Sbjct: 591 GRVLIDGGAALNILSPAAFDAIKAPGMVLRPSQP----IIGVTPRHTWPLGHIDLPVTFG 646
Query: 521 DHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIISTHHLMLKYPWAGRAVPVRGNLE 580
RT + F V + YNA+LGRP+L F + +L +K P G + V G+L+
Sbjct: 647 GSANFRTERVNFDVADLSLPYNAVLGRPALVKFMVAVHYAYLQMKMPGPGGPITVHGDLK 706
Query: 581 MARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLLTDLDPRVDPSRDDHRLKPDGE 640
+A +C R E SK P+ D RL
Sbjct: 707 VALACMEQ-----RAEHLAAASK------------------------PAGGDERLSTS-- 735
Query: 641 SHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLFAWSSEDMPGIDPAFCSHRLSV 700
V P +P + L +N +FAW DMPG+ HRL++
Sbjct: 736 -----VPAAPRQRMITCDEVPIKQEDALVSFLRANADVFAWRPADMPGVPREVIEHRLAI 790
Query: 701 DRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKANGKWRMC 760
+PV QK R+ + E+Q I+++ LL AG IREV + WL+N V+V KANGK RMC
Sbjct: 791 RPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMC 850
Query: 761 VDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITD 820
+DYTDLNKACPKDP+PLP ID +VD+++G + L +DAYSGY+QI M R+DEEKTAFIT
Sbjct: 851 IDYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFITP 910
Query: 821 RGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVV 880
GTYCYT +PFGLKNA T+QR G +G++VE Y+DD++VKT +DLA
Sbjct: 911 IGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDLVVKTRNQETLLSDLAET 970
Query: 881 FEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQL 940
FE L+ ++LNPDKC FGV +GK LG++++ RGIE NP+K +AI M+ P +++VQ +
Sbjct: 971 FESLRTARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKIRAIERMRPPSKLRDVQCV 1030
Query: 941 AGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFTQLKEILSSP 991
G MAA+ RF+ + +ALPL+ LLK F W+ EA+ A TQLK LSSP
Sbjct: 1031 TGCMAALSRFISRLGEKALPLFKLLKRSGPFIWTEEAERALTQLKAYLSSP 1081
>gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532234|ref|NP_920419.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225035|gb|AAL86511.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 433 bits (1113), Expect = e-119
Identities = 289/903 (32%), Positives = 446/903 (49%), Gaps = 104/903 (11%)
Query: 109 PKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRLVLATAALAPGPFLTSLDGK 168
PKT Q L ++Q+ ES++ ++ RF++ + + + + A+A L G + K
Sbjct: 235 PKTQQHLLGIRQRLGESIREYMRRFSQARCQVQDITEASVINAASAGLLEGEVTRKIANK 294
Query: 169 PANTLEEFL------ARAEKFINMEDAVTLR------AASQTLA---IKGPQKMKEHKDQ 213
TLE L AR E+ A+ AA+Q A + P + + Q
Sbjct: 295 EPQTLEHLLRIIDGFARGEEDSKRRQAIQAEYDKASVAAAQAQAQAQVAEPPPLAVRQPQ 354
Query: 214 PSTR-ESRRKGQDERKPKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTRGDKLDS 272
P+ + + R+GQ ++ + D + ++ + + D + K+
Sbjct: 355 PAIQGQPPRQGQAPMTWRKFRTDRASKAVMAVEEVQALRKEFDAQQASNHQQPVRKKVRK 414
Query: 273 KRFCEFHDSPGHNTDECLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRRTPTPPR 332
+C FH H ++C N++ + G + PR P T PR
Sbjct: 415 DLYCAFHGRSLHTMEQCRNIRQR------------------GNVQDPR-PQQGATVEAPR 455
Query: 333 H--RDQTP--PKRRSAERRDKTPPRRRSPERRRRSRERRRSPDRHGRDEVRRQHGSNIVD 388
++QTP +R+ A+RR R P + R+++ ++R H
Sbjct: 456 EAFQEQTPLAEQRQDAQRRVIQVITRADPPSQLSKRQKKM--------QIRMVHS----- 502
Query: 389 VGSIAGGWAAGGPTNNSQKRSTRVIMSAAGRPRPGSLHPPRQKVAITFTEDDYGEDTGEE 448
+++AG P L+ I F +D
Sbjct: 503 -------------------------ITSAGEGAPQYLNQ-----LIYFGPEDAEGVMFPH 532
Query: 449 DDPIVIEALIGNGKIRRTLIDTGSSADIMFYDAYKSLGLSVKDLLPYDHDLVGFTGDRVL 508
DP+VI A I ++RR L+D GSSAD++F +AY +GL+ + L P L GF G+ V
Sbjct: 533 QDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLTSQALTPAPASLRGFGGEAVQ 592
Query: 509 PLGYFDTCLSLGDHRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIISTHHLMLKYPW 568
LG ++ G R + F VV+ P YN I GR +LN F I ++L LK P
Sbjct: 593 VLGQALLLIAFGSGENRREEQVLFDVVDIPYNYNTIFGRATLNMFEVISHHNYLELKMPG 652
Query: 569 AGRAVPVRGNLEMARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLLTDLDPRVDP 628
+ V+G A S + + K HD+ +HA T +
Sbjct: 653 PTGVIVVKGLQPSAAS--KGDLAIINRAVHNVEVKLHDRP-----KHAPKPTPHGKIIKV 705
Query: 629 SRDDHRLKPDGESHPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLFAWSSEDMPG 688
DD +P +L + ++ + + K+ N +FAWS +++ G
Sbjct: 706 QIDD---------------AVPTKLVSLGGDMGKEEVESILKVPKKNIDIFAWSPDEVGG 750
Query: 689 IDPAFCSHRLSVDRKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVV 748
+ H L+V + KP QK R+MSA++Q+ + + +LLRAG+I+E+ + WL+N V
Sbjct: 751 VSIVLIMHHLAVKPEAKPRKQKLRKMSADRQEAAKAEVQKLLRAGVIQEIDHPEWLANPV 810
Query: 749 LVKKANGKWRMCVDYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMH 808
LV+K+NGKWRMCVD+TDLNKACPKD FPLP ID LVD+++G E +S ++AYSGY+QI M+
Sbjct: 811 LVQKSNGKWRMCVDFTDLNKACPKDDFPLPRIDQLVDSTAGCELMSFLNAYSGYHQIHMN 870
Query: 809 RDDEEKTAFITDRGTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTP 868
D KT+FIT T+C+ +PFGL+NA AT+ R++ ++ +G++VE Y+DDI+VK
Sbjct: 871 PLDIPKTSFITPFDTFCHLRMPFGLRNAGATFARLVYKVLCKQLGRNVEAYVDDIVVKIR 930
Query: 869 KGGDHAADLAVVFEQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNM 928
K DHA DL F+ L+ ++LNP+KC FGVR+GK LG++++ RGIE NP+K AI M
Sbjct: 931 KAFDHAIDLQETFDNLRAAGIKLNPEKCVFGVRAGKLLGFLVSERGIEANPEKIDAIQQM 990
Query: 929 KSPRTVKEVQQLAGRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFTQLKEIL 988
K P +V EVQ+LAGR+ A+ RFL +AA R LP + L+ F W+ E AF +LK+ L
Sbjct: 991 KPPSSVHEVQKLAGRIVALSRFLSRAAERGLPFFKTLRGAGKFNWTPECQVAFDELKQYL 1050
Query: 989 SSP 991
SP
Sbjct: 1051 QSP 1053
>ref|NP_909189.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1783
Score = 420 bits (1079), Expect = e-115
Identities = 288/890 (32%), Positives = 433/890 (48%), Gaps = 98/890 (11%)
Query: 109 PKTAQTLALVKQKEKESLKAFLNRFNKEAGDITGLLPDTRLVLATAALAPGPFLTSLDGK 168
P L V++ + ESL++++ RF + I + + + L + K
Sbjct: 10 PGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVIYAFRGGVRHNRMLEKIASK 69
Query: 169 PANTLEEFLARAEKFINMEDAVTLRAASQTLAIKGPQKMKEHKDQPSTRESRRKGQDERK 228
T E A++ E+A T ++ +A Q R+ RRK ++
Sbjct: 70 EPQTTAELFQLADRVARKEEAWTWNSSGSGVAASAAPGSAA---QTGRRDRRRK----KR 122
Query: 229 PKRKKYDSYTPLNSSLSRILREKASTDLRDRPPPLLTRGDKLDSKRFCEFHDSPGHNTDE 288
P R + + R R+ D+ T + + R+C H++ H+ +
Sbjct: 123 PDRSGDEGHVLAVEGAPRATRKGRPAS--DKKNEAGTPSRERLAGRWCSVHNTSLHDLAD 180
Query: 289 CLNLKDKVEELIRAGRLSRYVAVSTGALPRPRSPPPRRTPTPPRHRDQTPPKRRSAERRD 348
C +K+ E R + + R ERR+
Sbjct: 181 CRAVKNLAE------------------------------------RTRKWEEDRRQERRE 204
Query: 349 KTPPRRRSPERRRRSRERRRSPD-RHGRDEVRRQH-GSNIVDVGSIAGGWAAGGPTNNSQ 406
P S +RR ++++ + D G D++ Q G+ I V G A + S
Sbjct: 205 GKSPAVPSGKRRSEAKQKAPAVDIDDGDDDLGFQEPGATIATVD----GGACAHVSRRSF 260
Query: 407 KRSTRVIMSAAGRPRPGSLHPPR-QKVAITFTEDDYGEDTGEEDDP-IVIEALIGNGKIR 464
K R +++ A P ++ R +VA+TF + D+ +V+ I N K+
Sbjct: 261 KAMKRELLAMA--PTHEAMRRARWSEVALTFDQTDHPPCIARGGQAAMVVSPTICNVKLG 318
Query: 465 RTLIDTGSSADIMF---YDAYKSLGLSVKDLLPYDHDLVGFTGDRVLPLGYFDTCLSLGD 521
R LID G++ +I+ +DA K+ G+ ++ P ++G T PLG+ D ++ G
Sbjct: 319 RVLIDGGAALNILSPAAFDAIKAPGMVLQPSQP----IIGVTPGHTWPLGHIDLPVTFGG 374
Query: 522 HRICRTIKARFLVVECPTAYNAILGRPSLNTFRAIISTHHLMLKYPWAGRAVPVRGNLEM 581
RT + F V + YNA+LGRP+L F A + +L +K P G + VRG+L+
Sbjct: 375 PANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKMPGPGGPISVRGDLKA 434
Query: 582 ARSCYNSSCRLAREERKRKKSKAHDQNGNYHVQHANLLTDLDPRVDPSRDDHRLKPDGES 641
A +C R +R SK P D RL P +
Sbjct: 435 ALACMEQ-----RADRLAAASK------------------------PEGGDERLGPSAPT 465
Query: 642 HPI*VGPLPENTTNLARGLPRDLSKRMEKLLLSNGKLFAWSSEDMPGIDPAFCSHRLSVD 701
P +P + L +N +FAW DMPG+ HRL+V
Sbjct: 466 -------APRQRMATCDEVPVKEEDALVSFLRANADVFAWRPADMPGVPREVIEHRLAVR 518
Query: 702 RKYKPVAQKKRQMSAEKQQVIQQQTTELLRAGIIREVKYTTWLSNVVLVKKANGKWRMCV 761
+PV QK R+ + E+Q I+++ +LL AG IREV + WL+N V+V KANGK RMC+
Sbjct: 519 PGARPVRQKVRRQAPERQAFIREEVAKLLEAGFIREVIHPEWLANPVVVPKANGKLRMCI 578
Query: 762 DYTDLNKACPKDPFPLPSIDALVDNSSGYEYLSLMDAYSGYNQIPMHRDDEEKTAFITDR 821
DYTDLNKACPKDP+PLP ID +VD+++G + L +DAYSGY+QI M R+DEEKTAFIT
Sbjct: 579 DYTDLNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFITPV 638
Query: 822 GTYCYTMLPFGLKNAVATYQRMMTRIFGDLMGKSVEVYIDDIIVKTPKGGDHAADLAVVF 881
GTYCYT +PFGLKNA T+QR G +G++VE Y+DD++VKT +DLA F
Sbjct: 639 GTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDLVVKTRNQETLLSDLAETF 698
Query: 882 EQLKKHNMRLNPDKCTFGVRSGKFLGYMLTNRGIELNPDKCQAIMNMKSPRTVKEVQQLA 941
E L+ ++LNPDKC FGV +GK LG++++ RGIE NP+K +AI ++ P +++VQ +
Sbjct: 699 ENLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKIRAIERIRPPSKLRDVQCVT 758
Query: 942 GRMAAIGRFLPKAALRALPLYTLLKNGATFEWSAEADAAFTQLKEILSSP 991
G MAA+ RF+ + +ALPL+ LLK F W+ EA+ A TQLK LSSP
Sbjct: 759 GCMAALSRFISRLGEKALPLFKLLKRSGPFTWTEEAEHALTQLKAYLSSP 808
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,080,329,634
Number of Sequences: 2540612
Number of extensions: 140635939
Number of successful extensions: 761221
Number of sequences better than 10.0: 36821
Number of HSP's better than 10.0 without gapping: 2669
Number of HSP's successfully gapped in prelim test: 34315
Number of HSP's that attempted gapping in prelim test: 651929
Number of HSP's gapped (non-prelim): 74697
length of query: 1706
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1564
effective length of database: 502,593,490
effective search space: 786056218360
effective search space used: 786056218360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0059.7