BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058a.9
(407 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_629007.1| hypothetical protein DDB0192007 [Dictyostelium ... 50 1e-04
gb|EAA74404.1| hypothetical protein FG05065.1 [Gibberella zeae P... 47 0.001
gb|AAH90261.1| Zgc:110525 [Danio rerio] gi|61651846|ref|NP_00101... 47 0.001
emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifoli... 46 0.002
emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana] g... 46 0.002
gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis tha... 46 0.002
emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris] ... 46 0.002
dbj|BAA06518.1| cp29 [Arabidopsis thaliana] gi|30693824|ref|NP_8... 45 0.004
dbj|BAA06519.1| cp29 [Arabidopsis thaliana] 45 0.004
gb|AAH56659.1| MGC68591 protein [Xenopus laevis] 45 0.005
ref|XP_578168.1| PREDICTED: similar to RNA binding motif protein... 45 0.005
emb|CAB67653.1| RNA-binding protein cp29 protein [Arabidopsis th... 45 0.005
gb|EAA57658.1| hypothetical protein AN6017.2 [Aspergillus nidula... 45 0.005
gb|EAA56754.1| hypothetical protein MG07109.4 [Magnaporthe grise... 45 0.005
gb|AAG27092.1| RNA-binding protein Y14 [Xenopus laevis] gi|49118... 45 0.005
gb|AAL39067.1| single-stranded DNA binding protein precursor [So... 44 0.007
gb|AAN28790.1| At5g64200/MSJ1_4 [Arabidopsis thaliana] gi|216896... 44 0.007
emb|CAC03600.1| splicing factor SC35 [Arabidopsis thaliana] 44 0.007
gb|AAO45216.1| RE27227p [Drosophila melanogaster] 44 0.007
gb|AAF55577.2| CG7697-PA [Drosophila melanogaster] gi|17137710|r... 44 0.007
>ref|XP_629007.1| hypothetical protein DDB0192007 [Dictyostelium discoideum]
gi|60462370|gb|EAL60591.1| hypothetical protein
DDB0192007 [Dictyostelium discoideum]
Length = 565
Score = 50.4 bits (119), Expect = 1e-04
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 61 SVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQG 120
+++I I++S D LR++ S+FG + + V + K+ FGF Y D+A +A+
Sbjct: 285 NLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTE 344
Query: 121 LNGFRLGSAPLSASLA 136
+NG +G+ PL +LA
Sbjct: 345 MNGRMIGTKPLYVALA 360
>gb|EAA74404.1| hypothetical protein FG05065.1 [Gibberella zeae PH-1]
gi|46121373|ref|XP_385241.1| hypothetical protein
FG05065.1 [Gibberella zeae PH-1]
Length = 293
Score = 47.0 bits (110), Expect = 0.001
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 10 SFAPISAAARQIGSTTARGVGD------VAGEEEGG----ELDGEADGGSRSCSA-GRRS 58
+ API + + A G+GD AG ++G L G G R S G R
Sbjct: 154 TMAPIGESG---AADVAAGMGDEPSAAAAAGAKKGSYVPPALRGNGSAGERMGSKFGERD 210
Query: 59 CFSVF-IDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKA 117
F+ + + E + LRD+ +FG+V +F+ + R++G F F + R A+KA
Sbjct: 211 DFATLRVTNVSEMAEEAELRDMFERFGRVTRVFLAKDRETGMAKGFAFISFADRGDAVKA 270
Query: 118 IQGLNGF 124
++GF
Sbjct: 271 CAKMDGF 277
>gb|AAH90261.1| Zgc:110525 [Danio rerio] gi|61651846|ref|NP_001013363.1|
hypothetical protein LOC503767 [Danio rerio]
Length = 174
Score = 46.6 bits (109), Expect = 0.001
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 40 ELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGR 99
E DG+ G RS + +F+ G+ E + D ++FG++ NL + R++G
Sbjct: 58 EQDGDEPGPQRSVEG-----WILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGY 112
Query: 100 FFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPRRG 148
+ Y +A A++GLNG L P+S + S RRG
Sbjct: 113 LKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRGPPKSKRRG 161
>emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
gi|1350821|sp|P49314|ROC2_NICPL 31 kDa
ribonucleoprotein, chloroplast precursor (CP-RBP31)
Length = 292
Score = 46.2 bits (108), Expect = 0.002
Identities = 40/131 (30%), Positives = 53/131 (39%), Gaps = 3/131 (2%)
Query: 6 RASRSFAPISAAARQIGSTTARGVGDVAGEEEGGELDGEADGGSRSCSAGRRSCFSVFID 65
RA R A + A R+ S G G GG DG + G S V++
Sbjct: 157 RAIRVNAGPAPAKRENSSF---GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVG 213
Query: 66 GIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGFR 125
+ D L L+++ S+ G VV+ V R SGR FGF Y + AI LNG
Sbjct: 214 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGID 273
Query: 126 LGSAPLSASLA 136
L + S A
Sbjct: 274 LDGRSIRVSAA 284
>emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein
[Arabidopsis thaliana] gi|26983870|gb|AAN86187.1|
putative polyadenylate-binding protein 2 (PABP2)
[Arabidopsis thaliana] gi|1171978|sp|P42731|PABP2_ARATH
Polyadenylate-binding protein 2 (Poly(A)-binding protein
2) (PABP 2) gi|304109|gb|AAA61780.1| poly(A)-binding
protein
Length = 629
Score = 46.2 bits (108), Expect = 0.002
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 50 RSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYG 109
R S R ++FI ++ES D+ L D S FG +V+ V SG+ +GF +Y
Sbjct: 114 RDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYA 172
Query: 110 LRDQALKAIQGLNGFRL 126
+ A KAI+ LNG L
Sbjct: 173 NEESAQKAIEKLNGMLL 189
Score = 35.8 bits (81), Expect = 2.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 50 RSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYG 109
R +A + +V++ + ES L++ ++GK+ + V + + G+ FGF +
Sbjct: 205 RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFE 263
Query: 110 LRDQALKAIQGLNGFR 125
D A +A++ LNG +
Sbjct: 264 NADDAARAVESLNGHK 279
>gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 46.2 bits (108), Expect = 0.002
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 50 RSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYG 109
R S R ++FI ++ES D+ L D S FG +V+ V SG+ +GF +Y
Sbjct: 98 RDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYA 156
Query: 110 LRDQALKAIQGLNGFRL 126
+ A KAI+ LNG L
Sbjct: 157 NEESAQKAIEKLNGMLL 173
Score = 35.8 bits (81), Expect = 2.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 50 RSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYG 109
R +A + +V++ + ES L++ ++GK+ + V + + G+ FGF +
Sbjct: 189 RDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFE 247
Query: 110 LRDQALKAIQGLNGFR 125
D A +A++ LNG +
Sbjct: 248 NADDAARAVESLNGHK 263
>emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
gi|12230585|sp|Q08937|ROC2_NICSY 29 kDa
ribonucleoprotein B, chloroplast precursor (CP29B)
Length = 291
Score = 45.8 bits (107), Expect = 0.002
Identities = 40/131 (30%), Positives = 53/131 (39%), Gaps = 3/131 (2%)
Query: 6 RASRSFAPISAAARQIGSTTARGVGDVAGEEEGGELDGEADGGSRSCSAGRRSCFSVFID 65
RA R A + A R+ S G G GG DG + G S V++
Sbjct: 156 RAIRVNAGPAPAKRENSSF---GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVG 212
Query: 66 GIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGFR 125
+ D L L+++ S+ G VV+ V R SGR FGF Y + AI LNG
Sbjct: 213 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVD 272
Query: 126 LGSAPLSASLA 136
L + S A
Sbjct: 273 LDGRSIRVSAA 283
>dbj|BAA06518.1| cp29 [Arabidopsis thaliana] gi|30693824|ref|NP_850692.1| 29 kDa
ribonucleoprotein, chloroplast / RNA-binding protein cp
29 [Arabidopsis thaliana]
Length = 334
Score = 45.1 bits (105), Expect = 0.004
Identities = 41/142 (28%), Positives = 56/142 (38%), Gaps = 8/142 (5%)
Query: 5 ARASRSFAPISAAARQIGSTTARGVGDVAGEEEGGELDGEADGGSRSCS--------AGR 56
+R RS S GS G G G G + G GGS+ S +G
Sbjct: 186 SRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGS 245
Query: 57 RSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALK 116
S +++ + D + L ++ ++ GKVV V R SGR FGF + K
Sbjct: 246 GSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 305
Query: 117 AIQGLNGFRLGSAPLSASLAWA 138
AI LNG L + S A A
Sbjct: 306 AINSLNGADLDGRQIRVSEAEA 327
>dbj|BAA06519.1| cp29 [Arabidopsis thaliana]
Length = 326
Score = 45.1 bits (105), Expect = 0.004
Identities = 41/142 (28%), Positives = 56/142 (38%), Gaps = 8/142 (5%)
Query: 5 ARASRSFAPISAAARQIGSTTARGVGDVAGEEEGGELDGEADGGSRSCS--------AGR 56
+R RS S GS G G G G + G GGS+ S +G
Sbjct: 178 SRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGS 237
Query: 57 RSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALK 116
S +++ + D + L ++ ++ GKVV V R SGR FGF + K
Sbjct: 238 GSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 297
Query: 117 AIQGLNGFRLGSAPLSASLAWA 138
AI LNG L + S A A
Sbjct: 298 AINSLNGADLDGRQIRVSEAEA 319
>gb|AAH56659.1| MGC68591 protein [Xenopus laevis]
Length = 174
Score = 44.7 bits (104), Expect = 0.005
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 40 ELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGR 99
E DG+ G RS + +F+ G+ E + D +FG++ N+ + R++G
Sbjct: 58 EQDGDEPGPQRSVEG-----WILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGF 112
Query: 100 FFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPR 146
+ Y +AL A++GLNG L P+S W +V G P+
Sbjct: 113 LKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVD--WG-FVRGPPK 156
>ref|XP_578168.1| PREDICTED: similar to RNA binding motif protein 8a [Rattus
norvegicus]
Length = 342
Score = 44.7 bits (104), Expect = 0.005
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 62 VFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGL 121
+F+ G+ E + D S++G ++N+ + R +G + Y + AI+GL
Sbjct: 224 LFVTGVHEEATEEDIHDKLSEYGXIINIHLNLDRHTGCLKEYTLAEYETYKEDQAAIEGL 283
Query: 122 NGFRLGSAPLSASLAWAPWVCGSPR 146
NG L P+ S+ W +VCGSP+
Sbjct: 284 NGQDLMGQPI--SIHWC-FVCGSPK 305
>emb|CAB67653.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|21593426|gb|AAM65393.1| RNA-binding protein cp29
protein [Arabidopsis thaliana]
gi|18655393|gb|AAL76152.1| AT3g53460/F4P12_160
[Arabidopsis thaliana] gi|14532570|gb|AAK64013.1|
AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|30316379|sp|Q43349|ROC2_ARATH 29 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein cp29) gi|15231817|ref|NP_190914.1| 29 kDa
ribonucleoprotein, chloroplast / RNA-binding protein cp
29 [Arabidopsis thaliana] gi|11346380|pir||T45886
RNA-binding protein cp29 protein - Arabidopsis thaliana
Length = 342
Score = 44.7 bits (104), Expect = 0.005
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 22 GSTTARGVGDVAGEEEGGELDGEADGGSRSCS--------AGRRSCFSVFIDGIEESFDY 73
GS G G G G + G GGS+ S +G S +++ + D
Sbjct: 211 GSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDD 270
Query: 74 LHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSA 133
+ L ++ ++ GKVV V R SGR FGF + KAI LNG L +
Sbjct: 271 MALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRV 330
Query: 134 SLAWA 138
S A A
Sbjct: 331 SEAEA 335
>gb|EAA57658.1| hypothetical protein AN6017.2 [Aspergillus nidulans FGSC A4]
gi|67539694|ref|XP_663621.1| hypothetical protein
AN6017_2 [Aspergillus nidulans FGSC A4]
gi|49097388|ref|XP_410154.1| hypothetical protein
AN6017.2 [Aspergillus nidulans FGSC A4]
Length = 785
Score = 44.7 bits (104), Expect = 0.005
Identities = 34/128 (26%), Positives = 53/128 (40%), Gaps = 15/128 (11%)
Query: 11 FAPISAAARQIGSTTARGVGDVAGEEEGGELD-------------GEADGGSRSCSAGRR 57
F A + G+ A G G AGE+ G L G A GG R +
Sbjct: 643 FKDTMAPVDEPGAGGAEG-GAAAGEDAAGGLGAGGGSYVPPHLRKGAAGGGERMAGKYEK 701
Query: 58 SCFSVF-IDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALK 116
+ + + E + LRD+ +FG+V +F+ R R++ R F F + R A +
Sbjct: 702 DDLATLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAAR 761
Query: 117 AIQGLNGF 124
A ++GF
Sbjct: 762 ACDKMDGF 769
>gb|EAA56754.1| hypothetical protein MG07109.4 [Magnaporthe grisea 70-15]
gi|39971587|ref|XP_367184.1| hypothetical protein
MG07109.4 [Magnaporthe grisea 70-15]
Length = 303
Score = 44.7 bits (104), Expect = 0.005
Identities = 29/113 (25%), Positives = 51/113 (44%), Gaps = 10/113 (8%)
Query: 22 GSTTARGVGDVAGEEEGGEL---------DGEADGGSRSCSAGRRSCFSVF-IDGIEESF 71
G +A G AG ++G + +GE GG G R + + + E
Sbjct: 175 GILSAPGAAGGAGAKKGSYVPPALRGDRKEGEKMGGGAGGKYGERDDLATLRVTNVSEMA 234
Query: 72 DYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNGF 124
+ LRD+ +FG+V +F+ + R +G F F + R+ A+KA ++G+
Sbjct: 235 EEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACNKMDGW 287
>gb|AAG27092.1| RNA-binding protein Y14 [Xenopus laevis] gi|49118357|gb|AAH73361.1|
Rbm8 protein [Xenopus laevis]
Length = 174
Score = 44.7 bits (104), Expect = 0.005
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 40 ELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGR 99
E DG+ G RS + +F+ G+ E + D +FG++ N+ + R++G
Sbjct: 58 EQDGDEPGPQRSVEG-----WILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGF 112
Query: 100 FFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPR 146
+ Y +AL A++GLNG L P+S W +V G P+
Sbjct: 113 LKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVD--WG-FVRGPPK 156
>gb|AAL39067.1| single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 44.3 bits (103), Expect = 0.007
Identities = 35/113 (30%), Positives = 47/113 (40%), Gaps = 15/113 (13%)
Query: 37 EGGELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRK 96
+GG G D +R V++ + S D L + S+ GKVV+ V R
Sbjct: 192 QGGRGGGSMDSSNR-----------VYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRD 240
Query: 97 SGRFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPRRGF 149
SGR FGF Y + AI+ L+G LG + S P PRR F
Sbjct: 241 SGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRAIRVS----PAEARPPRRQF 289
Score = 35.4 bits (80), Expect = 3.2
Identities = 36/130 (27%), Positives = 54/130 (40%), Gaps = 14/130 (10%)
Query: 35 EEEGGELDGEADGGSRSCSAGRRSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQ 94
EEEGG D A R+ + + +F+ + S D L ++ + G V + V
Sbjct: 78 EEEGGLSDEGASYEERNANPDLK----IFVGNLPFSVDSAALAELFERAGDVEMVEVIYD 133
Query: 95 RKSGRFFRFGFFRYGLRDQALKAIQGLNGFRLGSAPLSASLAWAPWVCGSPRR--GFGLC 152
+ +GR FGF ++ A Q NG+ + L + AP P+R FG
Sbjct: 134 KLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVNSGPAP-----PKRENSFG-- 186
Query: 153 SQASSAQGQR 162
SS QG R
Sbjct: 187 -DNSSYQGGR 195
>gb|AAN28790.1| At5g64200/MSJ1_4 [Arabidopsis thaliana] gi|21689657|gb|AAM67450.1|
unknown protein [Arabidopsis thaliana]
gi|17380868|gb|AAL36246.1| unknown protein [Arabidopsis
thaliana] gi|22022546|gb|AAM83231.1| AT5g64200/MSJ1_4
[Arabidopsis thaliana] gi|9759396|dbj|BAB09851.1|
unnamed protein product [Arabidopsis thaliana]
gi|15237641|ref|NP_201225.1| arginine/serine-rich
splicing factor SC35 [Arabidopsis thaliana]
gi|30697964|ref|NP_851261.1| arginine/serine-rich
splicing factor SC35 [Arabidopsis thaliana]
Length = 303
Score = 44.3 bits (103), Expect = 0.007
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 76 LRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNG 123
L + +K+GKVV++F+ R R++G F F RY +D+A KA++ L+G
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
>emb|CAC03600.1| splicing factor SC35 [Arabidopsis thaliana]
Length = 303
Score = 44.3 bits (103), Expect = 0.007
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 76 LRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALKAIQGLNG 123
L + +K+GKVV++F+ R R++G F F RY +D+A KA++ L+G
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
>gb|AAO45216.1| RE27227p [Drosophila melanogaster]
Length = 437
Score = 44.3 bits (103), Expect = 0.007
Identities = 26/75 (34%), Positives = 42/75 (55%)
Query: 57 RSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALK 116
+S SVF+ I L++I S+ G V++L + R+SG+ FGF Y ++ AL
Sbjct: 13 KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALS 72
Query: 117 AIQGLNGFRLGSAPL 131
A++ LNG+ +G L
Sbjct: 73 AMRNLNGYEIGGRTL 87
>gb|AAF55577.2| CG7697-PA [Drosophila melanogaster] gi|17137710|ref|NP_477453.1|
CG7697-PA [Drosophila melanogaster]
gi|5713194|gb|AAD47839.1| cleavage stimulation factor 64
kilodalton subunit [Drosophila melanogaster]
Length = 419
Score = 44.3 bits (103), Expect = 0.007
Identities = 26/75 (34%), Positives = 42/75 (55%)
Query: 57 RSCFSVFIDGIEESFDYLHLRDICSKFGKVVNLFVQRQRKSGRFFRFGFFRYGLRDQALK 116
+S SVF+ I L++I S+ G V++L + R+SG+ FGF Y ++ AL
Sbjct: 13 KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALS 72
Query: 117 AIQGLNGFRLGSAPL 131
A++ LNG+ +G L
Sbjct: 73 AMRNLNGYEIGGRTL 87
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.142 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 715,904,273
Number of Sequences: 2540612
Number of extensions: 31977726
Number of successful extensions: 106250
Number of sequences better than 10.0: 1094
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 299
Number of HSP's that attempted gapping in prelim test: 104513
Number of HSP's gapped (non-prelim): 1877
length of query: 407
length of database: 863,360,394
effective HSP length: 130
effective length of query: 277
effective length of database: 533,080,834
effective search space: 147663391018
effective search space used: 147663391018
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0058a.9