BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.5
(504 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564758.2| polygalacturonase, putative / pectinase, putati... 674 0.0
pir||H86239 protein F20B24.8 [imported] - Arabidopsis thaliana g... 660 0.0
gb|AAN18178.1| At1g60590/F8A5_12 [Arabidopsis thaliana] gi|16974... 623 e-177
gb|AAK50769.1| polygalacturonase [Pisum sativum] 601 e-170
dbj|BAD68931.1| polygalacturonase PG1-like [Oryza sativa (japoni... 579 e-164
ref|XP_475942.1| putative polygalacturonase [Oryza sativa (japon... 543 e-153
gb|AAN28898.1| At1g10640/F20B24_8 [Arabidopsis thaliana] gi|3068... 537 e-151
gb|AAO24262.1| putative style polygalacturonase [Turnera subulata] 501 e-140
gb|AAD46483.1| polygalacturonase PG1 [Glycine max] 488 e-136
emb|CAB87632.1| polygalacturonase-like protein [Arabidopsis thal... 478 e-133
gb|AAD46484.1| polygalacturonase PG2 [Glycine max] 478 e-133
ref|NP_917129.1| putative polygalacturonase [Oryza sativa (japon... 434 e-120
dbj|BAD68939.1| polygalacturonase PG1-like [Oryza sativa (japoni... 431 e-119
ref|NP_563654.1| glycoside hydrolase family 28 protein / polygal... 348 2e-94
gb|AAM20001.1| putative polygalacturonase PG1 [Arabidopsis thali... 346 9e-94
gb|AAK95305.1| At1g48100/F21D18_17 [Arabidopsis thaliana] 346 9e-94
ref|NP_908534.1| putative polygalacturonase-like protein [Oryza ... 344 4e-93
gb|AAF79535.1| F21D18.18 [Arabidopsis thaliana] gi|25405916|pir|... 341 3e-92
ref|XP_476272.1| unknown protein [Oryza sativa (japonica cultiva... 335 3e-90
emb|CAA66811.1| polygalacturonase-like protein [Arabidopsis thal... 334 3e-90
>ref|NP_564758.2| polygalacturonase, putative / pectinase, putative [Arabidopsis
thaliana] gi|2462753|gb|AAB71972.1| putative
polygalacturonase [Arabidopsis thaliana]
gi|25404278|pir||B96631 probable polygalacturonase
F8A5.12 [imported] - Arabidopsis thaliana
Length = 540
Score = 674 bits (1739), Expect = 0.0
Identities = 331/549 (60%), Positives = 407/549 (73%), Gaps = 55/549 (10%)
Query: 1 MLKMSGLSFRFFSYMLLIVLLIWSSNFETCIARRGKHWRQ----SRTVSASLFKKKGNSH 56
M+ L+ R + M L+ +L+WS+ ETCIARRG+HWR S ++S SL KK SH
Sbjct: 1 MITRESLTLRSITMMTLVTILVWSATLETCIARRGRHWRHHHRSSSSLSDSLSSKKPKSH 60
Query: 57 GNSHNQHGGGGSSSHSKPKPPPPTH--KKTPSSPLF---------PKPKVDPPSTP---- 101
N+H+ S SKPKP T K SP+ P P V PP TP
Sbjct: 61 ENNHHH-----MSHKSKPKPKMKTQPPKSNDGSPVVSQPPQVQQPPPPHVQPPPTPLPLQ 115
Query: 102 PSNDYNGGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPI 161
P D S FNVLDFGAKGDG +DDT+AF+A A ACKVEASTM++P Y+F VGPI
Sbjct: 116 PVED-----SQQFNVLDFGAKGDGMSDDTQAFEAAWASACKVEASTMIIPPDYIFLVGPI 170
Query: 162 SFSGPYCKPNIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWW 221
SFSGPYC+ NIVFQL+G I+APT++ +WGGGL+ W+EF+KL GITIQG GVIDGRG+VWW
Sbjct: 171 SFSGPYCQANIVFQLEGMIVAPTDTESWGGGLMWWIEFTKLSGITIQGNGVIDGRGTVWW 230
Query: 222 Q-DFPYDDPIDDEEKLIVPLNHT--QKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTG 278
Q D+ D PIDD+ KLIVPLN++ ++P +P+++E+ +MP++KPTALRFYGS TVTG
Sbjct: 231 QQDYLSDYPIDDDFKLIVPLNNSVQERPPMPIRSELNWRMPSIKPTALRFYGSIDVTVTG 290
Query: 279 ITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG---- 334
ITIQNSPQCHLKFDNC VLVHDV++SSPGDSPNTDGIHLQN++DV+IH++ +ACG
Sbjct: 291 ITIQNSPQCHLKFDNCVKVLVHDVNVSSPGDSPNTDGIHLQNTRDVMIHTTTLACGDDCI 350
Query: 335 -------------------HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQG 375
HGISIGSLGKD+T+ACVSNIT+RDV MHNTM GVRIKTWQG
Sbjct: 351 SIQTGCSNVYVHNVNCGPGHGISIGSLGKDSTKACVSNITVRDVVMHNTMTGVRIKTWQG 410
Query: 376 GSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPV 435
G GSV+G+LFSNIQ++EVQLPIVIDQFYCD C NHTSAV++ G+ YE I+GTYTVKPV
Sbjct: 411 GIGSVKGILFSNIQLTEVQLPIVIDQFYCDHSKCMNHTSAVSVEGVTYEKIRGTYTVKPV 470
Query: 436 HFACSDSLPCVDVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPSSN 495
HFACSDS PC+DV L+ +ELKPVQ QYH+Y+PFCW+T+G+L + T PPIDC+QIGKP+ N
Sbjct: 471 HFACSDSFPCIDVQLSGIELKPVQLQYHMYDPFCWKTFGELNSATVPPIDCLQIGKPARN 530
Query: 496 RIQTNHDIC 504
+ ++HDIC
Sbjct: 531 GVHSDHDIC 539
>pir||H86239 protein F20B24.8 [imported] - Arabidopsis thaliana
gi|6573750|gb|AAF17670.1| F20B24.8 [Arabidopsis
thaliana]
Length = 542
Score = 660 bits (1702), Expect = 0.0
Identities = 325/551 (58%), Positives = 401/551 (71%), Gaps = 56/551 (10%)
Query: 1 MLKMSGLSFRFFSYMLLIVLLIWSSNFETCIARRGKHWRQSRTVSA----SLFKKKGNSH 56
M+ LS R + M+L+ +L+WS ETCIARRG+HWR S S+ SL KK SH
Sbjct: 1 MIMRRSLSLRSITMMILMAVLVWSVTLETCIARRGRHWRHSHRSSSDLSDSLSNKKPKSH 60
Query: 57 GNSHNQHGGGGSSSHSKPKPPPPTHKKTP------SSPLFP-KPKVDPPSTPPSNDYNGG 109
GNSH+ H ++ H K KP P KTP +SP+ PKV PP PP
Sbjct: 61 GNSHH-HSSHNNNHHHKSKPKPKPKLKTPPKAHDNNSPVVSGPPKVQPPPLPPQK----- 114
Query: 110 SSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPYCK 169
S +FNV+DFGAKGDG+ DDTKAF+A ACK+EAS M+VP Y + VGPISFSGPYC+
Sbjct: 115 GSQVFNVMDFGAKGDGKCDDTKAFEAAWVAACKIEASVMLVPPEYTYLVGPISFSGPYCQ 174
Query: 170 PNIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQ-DFPYDD 228
NIVFQLDGTIIAPT+S WG GL+ W++F+KL GI +QGKGVIDGRGS WWQ D P+
Sbjct: 175 ANIVFQLDGTIIAPTDSKTWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDSPF-- 232
Query: 229 PIDDEEKLIVPLNHT--QKPSLPVQNEMGRQMPAVKPT----------ALRFYGSFSPTV 276
ID + KLIVPLN++ Q P +P+++E+ +MP++KPT ALRF GSF V
Sbjct: 233 -IDSDTKLIVPLNNSANQNPPMPIRSELDERMPSIKPTVRNRYWHCEIALRFSGSFGVEV 291
Query: 277 TGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG-- 334
TGITIQNSPQCHLKFD+C GV+VHD+++SSPGDSPNTDGIHLQN+KDVLIHS+ +ACG
Sbjct: 292 TGITIQNSPQCHLKFDDCVGVVVHDIAVSSPGDSPNTDGIHLQNTKDVLIHSTTLACGDD 351
Query: 335 ---------------------HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTW 373
HGISIGSLGK+ T+ACVSNIT+RDV MHNTM GVRIKTW
Sbjct: 352 CISIQTGCSNVFVHNVNCGPGHGISIGSLGKEGTKACVSNITVRDVAMHNTMTGVRIKTW 411
Query: 374 QGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVK 433
QGG GSV+G++FSNIQ+++VQ+PI I+QFYCD C N TSAVA+ G+ YE IKGTYTVK
Sbjct: 412 QGGVGSVKGIIFSNIQLNQVQIPITINQFYCDHSKCKNQTSAVAVEGVTYERIKGTYTVK 471
Query: 434 PVHFACSDSLPCVDVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPS 493
PVHFACSD+ PCVDV L+S+ELKPVQE+Y +Y+ +CWQT+G+L TPT PPIDC++IGKP
Sbjct: 472 PVHFACSDNFPCVDVQLSSIELKPVQEKYRMYDAYCWQTFGELNTPTLPPIDCLKIGKPP 531
Query: 494 SNRIQTNHDIC 504
N++Q++HD+C
Sbjct: 532 RNKVQSDHDVC 542
>gb|AAN18178.1| At1g60590/F8A5_12 [Arabidopsis thaliana] gi|16974585|gb|AAL31197.1|
At1g60590/F8A5_12 [Arabidopsis thaliana]
Length = 474
Score = 623 bits (1606), Expect = e-177
Identities = 302/477 (63%), Positives = 366/477 (76%), Gaps = 46/477 (9%)
Query: 69 SSHSKPKPPPPTH--KKTPSSPLF---------PKPKVDPPSTP----PSNDYNGGSSTM 113
S SKPKP T K SP+ P P V PP TP P D S
Sbjct: 2 SHKSKPKPKMKTQPPKSNDGSPVVSQPPQVQQPPPPHVQPPPTPLPLQPVED-----SQQ 56
Query: 114 FNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPYCKPNIV 173
FNVLDFGAKGDG +DDT+AF+A A ACKVEASTM++P Y+F VGPISFSGPYC+ NIV
Sbjct: 57 FNVLDFGAKGDGMSDDTQAFEAAWASACKVEASTMIIPPDYIFLVGPISFSGPYCQANIV 116
Query: 174 FQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQ-DFPYDDPIDD 232
FQL+G I+APT++ +WGGGL+ W+EF+KL GITIQG GVIDGRG+VWWQ D+ D PIDD
Sbjct: 117 FQLEGMIVAPTDTESWGGGLMWWIEFTKLSGITIQGNGVIDGRGTVWWQQDYLSDYPIDD 176
Query: 233 EEKLIVPLNHT--QKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHLK 290
+ KLIVPLN++ ++P +P+++E+ +MP++KPTALRFYGS TVTGITIQNSPQCHLK
Sbjct: 177 DFKLIVPLNNSVQERPPMPIRSELNWRMPSIKPTALRFYGSIDVTVTGITIQNSPQCHLK 236
Query: 291 FDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG---------------- 334
FDNC VLVHDV++SSPGDSPNTDGIHLQN++DV+IH++ +ACG
Sbjct: 237 FDNCVKVLVHDVNVSSPGDSPNTDGIHLQNTRDVMIHTTTLACGDDCISIQTGCSNVYVH 296
Query: 335 -------HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSN 387
HGISIGSLGKD+T+ACVSNIT+RDV MHNTM GVRIKTWQGG GSV+G+LFSN
Sbjct: 297 NVNCGPGHGISIGSLGKDSTKACVSNITVRDVVMHNTMTGVRIKTWQGGIGSVKGILFSN 356
Query: 388 IQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCVD 447
IQ++EVQLPIVIDQFYCD C NHTSAV++ G+ YE I+GTYTVKPVHFACSDS PC+D
Sbjct: 357 IQLTEVQLPIVIDQFYCDHSKCMNHTSAVSVEGVTYEKIRGTYTVKPVHFACSDSFPCID 416
Query: 448 VSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPSSNRIQTNHDIC 504
V L+ +ELKPVQ QYH+Y+PFCW+T+G+L + T PPIDC+QIGKP+ N + ++HDIC
Sbjct: 417 VQLSGIELKPVQLQYHMYDPFCWKTFGELNSATVPPIDCLQIGKPARNGVHSDHDIC 473
>gb|AAK50769.1| polygalacturonase [Pisum sativum]
Length = 355
Score = 601 bits (1550), Expect = e-170
Identities = 284/353 (80%), Positives = 310/353 (87%), Gaps = 23/353 (6%)
Query: 175 QLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDPIDDEE 234
+LDGTIIAPTN +AW G LQWLEF+KL GI IQG GVIDGRGSVWWQDFPYD+PIDDEE
Sbjct: 3 ELDGTIIAPTNPSAWSGVTLQWLEFTKLEGIVIQGNGVIDGRGSVWWQDFPYDNPIDDEE 62
Query: 235 KLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNC 294
KLI+PLNHTQ P +PVQNEMGR MP+ KPTALRFYGS+ PTVTGITIQNSPQCHLKFD+C
Sbjct: 63 KLIIPLNHTQNPPMPVQNEMGRTMPSNKPTALRFYGSYGPTVTGITIQNSPQCHLKFDSC 122
Query: 295 NGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG-------------------- 334
N VLVHDVSISSPGDSPNTDGIHLQNSKDVLI+SSK+ACG
Sbjct: 123 NRVLVHDVSISSPGDSPNTDGIHLQNSKDVLIYSSKLACGDDCISIQTGCSNVYVHNVDC 182
Query: 335 ---HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVS 391
HGISIGSLGKDNTRACVSNIT+RDVN+HN+MNGVRIKTWQGGSGSVQGVLFSNIQV+
Sbjct: 183 GPGHGISIGSLGKDNTRACVSNITVRDVNIHNSMNGVRIKTWQGGSGSVQGVLFSNIQVT 242
Query: 392 EVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCVDVSLT 451
EVQLPIVIDQFYCDKR+CTNHTSAV+L GINYE IKGTYTVKPVHFACSDS PCVDVSL
Sbjct: 243 EVQLPIVIDQFYCDKRTCTNHTSAVSLEGINYERIKGTYTVKPVHFACSDSFPCVDVSLA 302
Query: 452 SVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPSSNRIQTNHDIC 504
+VELKP+QEQYHLY+PFCWQT+G+L TPT PPI C+QIGKP++NRIQT+HDIC
Sbjct: 303 TVELKPIQEQYHLYDPFCWQTFGELKTPTVPPIGCLQIGKPTNNRIQTDHDIC 355
>dbj|BAD68931.1| polygalacturonase PG1-like [Oryza sativa (japonica cultivar-group)]
Length = 538
Score = 579 bits (1493), Expect = e-164
Identities = 298/559 (53%), Positives = 365/559 (64%), Gaps = 79/559 (14%)
Query: 2 LKMSGLSFRFFSYMLLIVLLIWSSNFETCIARRGKHWRQSRTVSASLFKKKGNSH-GNSH 60
L++ GL +LL+VLL S + C ARRGKHWR + S+SL + KG G+S+
Sbjct: 3 LRVKGLGL-----LLLLVLLALCSTIDVCDARRGKHWRPRSSPSSSLLRNKGKGKKGSSN 57
Query: 61 NQHGGGGSSSHSKPKPPP-------------PTHKKTPSSPLFPKPKV------------ 95
QHG S PPP P+ +P++P+ P P
Sbjct: 58 RQHGSNRPSPKPPLSPPPSPGNGKGYQSPYQPSPSPSPNAPVSPSPVNGSGHASPKSPTP 117
Query: 96 ------DPPSTPPSNDYNGGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMV 149
PPS P G +FNV+DFGAKGDG +DDTKAF+A A ACK AST+V
Sbjct: 118 SCGKGNQPPSRPTPTSPQGA---VFNVVDFGAKGDGVSDDTKAFEAAWAAACKQGASTVV 174
Query: 150 VPAAYVFYVGPISFSGPYCKPNIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQG 209
VP+ F VGPISFSGPYCKPNI+FQLDGTI+APT++ AWG GLLQW+EF+KL G++IQG
Sbjct: 175 VPSELEFLVGPISFSGPYCKPNILFQLDGTIVAPTSAKAWGSGLLQWIEFTKLNGVSIQG 234
Query: 210 KGVIDGRGSVWWQDFPYDDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFY 269
G+I+GRG WW DD DD+ + V +MP VKPTALRFY
Sbjct: 235 NGIINGRGQQWWTYSDIDDDEDDDTQYDVEFE---------------RMPQVKPTALRFY 279
Query: 270 GSFSPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSS 329
GSF+ V GITI NS QCHLKFD+C GV+VHDV+ISSP +S NTDGIHLQNSKDV IH +
Sbjct: 280 GSFNVVVAGITIVNSSQCHLKFDSCQGVMVHDVTISSPENSLNTDGIHLQNSKDVSIHHT 339
Query: 330 KMACG-----------------------HGISIGSLGKDNTRACVSNITIRDVNMHNTMN 366
+ACG HGISIG LG+DNT+ACVSN+T+RDVNM TM
Sbjct: 340 NLACGDDCVSIQTGCSNINIHNVNCGPGHGISIGGLGRDNTKACVSNVTVRDVNMFRTMT 399
Query: 367 GVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGI 426
GVRIKTWQGG G VQ V FSNIQVSEVQ PI+IDQFYCDKR+C+N TSAVA++G+ YE I
Sbjct: 400 GVRIKTWQGGLGLVQDVRFSNIQVSEVQTPIIIDQFYCDKRTCSNQTSAVAVSGVQYENI 459
Query: 427 KGTYTVKPVHFACSDSLPCVDVSLTSVELKPVQ-EQYHLYEPFCWQTYGQLMTPTTPPID 485
+GT+T+KPVHFACSDS PC ++LT V+L+PVQ Y L +PFCWQ +G+L TPT PPI
Sbjct: 460 RGTFTIKPVHFACSDSSPCSGITLTGVQLRPVQIPHYRLNDPFCWQAFGELYTPTVPPIA 519
Query: 486 CIQIGKPSSNRIQTNHDIC 504
C+ +GKP+ N +Q+ HD+C
Sbjct: 520 CLHLGKPAGNNLQSYHDLC 538
>ref|XP_475942.1| putative polygalacturonase [Oryza sativa (japonica cultivar-group)]
gi|51854308|gb|AAU10689.1| putative polygalacturonase
[Oryza sativa (japonica cultivar-group)]
gi|47900290|gb|AAT39158.1| putative polygalacturonase
[Oryza sativa (japonica cultivar-group)]
Length = 571
Score = 543 bits (1398), Expect = e-153
Identities = 287/587 (48%), Positives = 358/587 (60%), Gaps = 105/587 (17%)
Query: 6 GLSFRFFSYMLLIVLLIWSSNFETCIARRGKHWRQSRTVSASLFKKKGNSH-GNSHNQHG 64
GL + +++LL+VLL+ SN AR GKHWRQ+R S++L ++KG NSH Q+G
Sbjct: 2 GLGIKGLTFLLLLVLLVLCSNVSLSDARSGKHWRQNRASSSTLLRRKGKGKTNNSHKQYG 61
Query: 65 GGGSS------------------------SHSKPKPPPPTHKK--TPSSPLFPKPKVDPP 98
G H P PPP+ T SP P P + PP
Sbjct: 62 KGNQDPYQPSPSTSPNVPVNPSERPVQGKGHPAPTMPPPSSGSGHTLPSPPPPLPPLLPP 121
Query: 99 STPPSNDYNGGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYV 158
PP+ +T+FNV+DFGA+GDG TDDT+AF+ A ACKVEAST++VP+ F V
Sbjct: 122 PQPPAAQ---SQNTVFNVVDFGARGDGVTDDTQAFEEAWAAACKVEASTVLVPSELEFVV 178
Query: 159 GPISFSGPYCKPNIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGS 218
GPISFSGPYCKPNI+FQLDGTI+A T++ WG GLLQWLEF+KL GI+IQG GVI+GRG
Sbjct: 179 GPISFSGPYCKPNILFQLDGTILAQTSTRVWGSGLLQWLEFTKLSGISIQGSGVINGRGQ 238
Query: 219 VWWQDFPYDDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTG 278
WW Y DP DD+ + N +MP +KPTALRFYGS + TVTG
Sbjct: 239 EWW---TYSDPNDDD-----------NDDVDAYNVELEKMPQIKPTALRFYGSSNVTVTG 284
Query: 279 ITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACGHGI- 337
ITI NS QCHLKFD+C GV+VHD++ISSP +SPNTDGIHLQNSK V IH S +ACG+ +
Sbjct: 285 ITIVNSSQCHLKFDSCQGVMVHDLTISSPENSPNTDGIHLQNSKQVSIHHSNLACGNALI 344
Query: 338 --------SIGSLGKDNTRACVSNITI----------------RDVNMHN---------- 363
+ GK T VS + D+N+HN
Sbjct: 345 NSIKAKPTGFRTKGKLKTLVQVSEVIFALCDAGDDCVSIQTGCSDINIHNVNCGPGHGIS 404
Query: 364 -------------------------TMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIV 398
TM GVRIKTWQGGSG VQG+ FSNIQVSEVQ PI+
Sbjct: 405 IGGLGRYNTKACVSNVTVRDVNMFKTMTGVRIKTWQGGSGLVQGIRFSNIQVSEVQTPII 464
Query: 399 IDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCVDVSLTSVELKP- 457
IDQFYCD+ +C N TSAVA+ G+ YE I+GT+T+KP HFACSDS PC +++LT ++LKP
Sbjct: 465 IDQFYCDRTTCRNQTSAVAVLGVQYENIRGTFTIKPAHFACSDSSPCSEITLTGIQLKPL 524
Query: 458 VQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPSSNRIQTNHDIC 504
+ QYHLY PFCWQ +G+L TPT PPI C+QIGKPS N + +++D+C
Sbjct: 525 IVPQYHLYNPFCWQAFGELSTPTIPPISCLQIGKPSGNNVMSDYDLC 571
>gb|AAN28898.1| At1g10640/F20B24_8 [Arabidopsis thaliana]
gi|30681834|ref|NP_563875.3| polygalacturonase, putative
/ pectinase, putative [Arabidopsis thaliana]
gi|14532456|gb|AAK63956.1| At1g10640/F20B24_8
[Arabidopsis thaliana]
Length = 380
Score = 537 bits (1384), Expect = e-151
Identities = 250/383 (65%), Positives = 308/383 (80%), Gaps = 29/383 (7%)
Query: 148 MVVPAAYVFYVGPISFSGPYCKPNIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITI 207
M+VP Y + VGPISFSGPYC+ NIVFQLDGTIIAPT+S WG GL+ W++F+KL GI +
Sbjct: 1 MLVPPEYTYLVGPISFSGPYCQANIVFQLDGTIIAPTDSKTWGKGLMWWIDFTKLKGIKV 60
Query: 208 QGKGVIDGRGSVWWQ-DFPYDDPIDDEEKLIVPLNHT--QKPSLPVQNEMGRQMPAVKPT 264
QGKGVIDGRGS WWQ D P+ ID + KLIVPLN++ Q P +P+++E+ +MP++KPT
Sbjct: 61 QGKGVIDGRGSGWWQQDSPF---IDSDTKLIVPLNNSANQNPPMPIRSELDERMPSIKPT 117
Query: 265 ALRFYGSFSPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDV 324
ALRF GSF VTGITIQNSPQCHLKFD+C GV+VHD+++SSPGDSPNTDGIHLQN+KDV
Sbjct: 118 ALRFSGSFGVEVTGITIQNSPQCHLKFDDCVGVVVHDIAVSSPGDSPNTDGIHLQNTKDV 177
Query: 325 LIHSSKMACG-----------------------HGISIGSLGKDNTRACVSNITIRDVNM 361
LIHS+ +ACG HGISIGSLGK+ T+ACVSNIT+RDV M
Sbjct: 178 LIHSTTLACGDDCISIQTGCSNVFVHNVNCGPGHGISIGSLGKEGTKACVSNITVRDVAM 237
Query: 362 HNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGI 421
HNTM GVRIKTWQGG GSV+G++FSNIQ+++VQ+PI I+QFYCD C N TSAVA+ G+
Sbjct: 238 HNTMTGVRIKTWQGGVGSVKGIIFSNIQLNQVQIPITINQFYCDHSKCKNQTSAVAVEGV 297
Query: 422 NYEGIKGTYTVKPVHFACSDSLPCVDVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTT 481
YE IKGTYTVKPVHFACSD+ PCVDV L+S+ELKPVQE+Y +Y+ +CWQT+G+L TPT
Sbjct: 298 TYERIKGTYTVKPVHFACSDNFPCVDVQLSSIELKPVQEKYRMYDAYCWQTFGELNTPTL 357
Query: 482 PPIDCIQIGKPSSNRIQTNHDIC 504
PPIDC++IGKP N++Q++HD+C
Sbjct: 358 PPIDCLKIGKPPRNKVQSDHDVC 380
>gb|AAO24262.1| putative style polygalacturonase [Turnera subulata]
Length = 473
Score = 501 bits (1289), Expect = e-140
Identities = 268/515 (52%), Positives = 321/515 (62%), Gaps = 74/515 (14%)
Query: 2 LKMSGLSFRFFSYMLLIVLLIWSSNFETCIARRGKHWRQSRTVSA-SLFKKKGNSHGNSH 60
+K G + + + M+LI L +W S FETC AR GK+W QS A S KK N +G +
Sbjct: 1 MKTGGFNKKSLTLMILIALCLWCSRFETCQAREGKYWTQSEAGPATSALVKKENGYGGND 60
Query: 61 NQHGGGGSSSHSKPKPPPPTHKKTPSSPLFPKPKVDPPSTPPSNDYNGGSSTMFNVLDFG 120
+ K D + G + FNVLD+G
Sbjct: 61 GRR--------------------------LSKFMGDMWNGEAQATQQYGKPSSFNVLDYG 94
Query: 121 AKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPYCKPNIVFQLDGTI 180
AKGDG TDDTKA+ A KV S ++VPA VF+VGP+SF G C NI QLDGTI
Sbjct: 95 AKGDGHTDDTKAWTD----AGKVARSKILVPAGSVFFVGPVSFLGSGCGANIELQLDGTI 150
Query: 181 IAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFP-YDDPIDDEEKLIVP 239
+AP +S WG GLLQW+EF +L G TIQGKG IDGRGSVWW D P Y + E
Sbjct: 151 LAPVSSKIWGSGLLQWIEFKELNGFTIQGKGTIDGRGSVWWNDLPSYGSEWESE------ 204
Query: 240 LNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNCNGVLV 299
V N++ +MP+ KPTALRFYGS TVTGITIQNSPQ HLKFD+C GV V
Sbjct: 205 ----------VGNQLDGKMPSTKPTALRFYGSTGVTVTGITIQNSPQTHLKFDSCTGVQV 254
Query: 300 HDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG-----------------------HG 336
D + SSPG+SPNTDGIHLQNS++VLI+SS +ACG HG
Sbjct: 255 SDFTTSSPGNSPNTDGIHLQNSQNVLIYSSDLACGDDCISIQTGCSNVFIHNVNCGPGHG 314
Query: 337 ISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLP 396
ISIG LGKDNT+ACVSN+T+RDV+MHNT+ GVRIKTWQGGSGSVQG+ FSN+QVS V P
Sbjct: 315 ISIGGLGKDNTKACVSNVTVRDVSMHNTLTGVRIKTWQGGSGSVQGITFSNVQVSGVGTP 374
Query: 397 IVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCVDVSLTSVELK 456
I+IDQFYCD C N +SAVAL GINY GIKGTYT KP+HFACSDS+PCV VSL+++EL
Sbjct: 375 IMIDQFYCDGSKCKNDSSAVALTGINYLGIKGTYTEKPIHFACSDSMPCVGVSLSTIELT 434
Query: 457 PVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGK 491
+E P CW YG + T T PP+DC++ GK
Sbjct: 435 ASEED---SPPLCWNAYGTVKTTTLPPVDCLRTGK 466
>gb|AAD46483.1| polygalacturonase PG1 [Glycine max]
Length = 443
Score = 488 bits (1256), Expect = e-136
Identities = 245/419 (58%), Positives = 299/419 (70%), Gaps = 41/419 (9%)
Query: 110 SSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPYCK 169
S+T FNVLD+GAKGDG DDTKAF+ A ACKVE STMVVP+ VF V PISFSGP C+
Sbjct: 42 SATSFNVLDYGAKGDGHADDTKAFEDAWAAACKVEGSTMVVPSGSVFLVKPISFSGPNCE 101
Query: 170 PNIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDP 229
PNIVFQLDG IIAPT+S AWG G LQWLEFSKL ITI+GKGVIDG+GSVWW + D P
Sbjct: 102 PNIVFQLDGKIIAPTSSEAWGSGTLQWLEFSKLNTITIRGKGVIDGQGSVWWNN---DSP 158
Query: 230 IDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHL 289
T P+ + GR +P+ KPTALRFYGS TVTGITIQNS Q HL
Sbjct: 159 -------------TYNPTEVMLESNGR-LPSTKPTALRFYGSDGVTVTGITIQNSQQTHL 204
Query: 290 KFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG--------------- 334
KFD+C V V +S+SSPGDSPNTDGIHLQNS++V+I+SS +ACG
Sbjct: 205 KFDSCTNVQVSGISVSSPGDSPNTDGIHLQNSQNVVIYSSTLACGDDCVSIQTGCSDIYV 264
Query: 335 --------HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFS 386
HGISIGSLG++NT+ACV N+T+RDV + NT+ GVRIKTWQGGSGSVQ ++FS
Sbjct: 265 HNVNCGPGHGISIGSLGRENTKACVRNVTVRDVTIQNTLTGVRIKTWQGGSGSVQNIMFS 324
Query: 387 NIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCV 446
N+QVS VQ PI IDQ+YCD C N +SAVA++GI+Y +KGTYT +P++FACSD+LPC
Sbjct: 325 NVQVSGVQTPISIDQYYCDGGRCRNESSAVAVSGIHYVNVKGTYTKEPIYFACSDNLPCS 384
Query: 447 DVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPS-SNRIQTNHDIC 504
++L +++L+ QE + PFCW+ YG+L T T PP++C+Q G PS I +N D C
Sbjct: 385 GITLDTIQLESAQETKNSNVPFCWEAYGELKTTTVPPVECLQRGNPSKEGGINSNIDSC 443
>emb|CAB87632.1| polygalacturonase-like protein [Arabidopsis thaliana]
gi|15241460|ref|NP_196969.1| polygalacturonase, putative
/ pectinase, putative [Arabidopsis thaliana]
gi|11263973|pir||T48638 polygalacturonase-like protein -
Arabidopsis thaliana
Length = 435
Score = 478 bits (1230), Expect = e-133
Identities = 239/420 (56%), Positives = 285/420 (66%), Gaps = 52/420 (12%)
Query: 108 GGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPY 167
GGSS NVLD GAKGDG +DDTKAF+ +ACKV AST++VP+ F VGP+SF G
Sbjct: 45 GGSSGTINVLDHGAKGDGTSDDTKAFEDAWQVACKVAASTLLVPSGSTFLVGPVSFLGKE 104
Query: 168 CKPNIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYD 227
CK IVFQL+G IIAPT+++AWG GLLQW+EF L GITI+GKG+IDGRGSVWW D
Sbjct: 105 CKEKIVFQLEGKIIAPTSASAWGSGLLQWIEFKALQGITIKGKGIIDGRGSVWWNDM--- 161
Query: 228 DPIDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQC 287
MG +MP KPTALRFYGS TV+GITIQNSPQ
Sbjct: 162 --------------------------MGTKMPRTKPTALRFYGSNGVTVSGITIQNSPQT 195
Query: 288 HLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG------------- 334
HLKFDNC + V D + SSPGDSPNTDGIHLQNS+D +I+ S +ACG
Sbjct: 196 HLKFDNCISIQVSDFTTSSPGDSPNTDGIHLQNSQDAVIYRSTLACGDDCISIQTGCSNI 255
Query: 335 ----------HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVL 384
HGISIG LGKDNT+ACVSNIT+RDV MH T NGVRIK+WQGGSGSV+ V+
Sbjct: 256 NIHDVDCGPGHGISIGGLGKDNTKACVSNITVRDVTMHETTNGVRIKSWQGGSGSVKQVM 315
Query: 385 FSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLP 444
FSNIQVS V PI+IDQ+YCD C N TSAVA++ INY IKGTYT +PV FACSDSLP
Sbjct: 316 FSNIQVSNVANPIIIDQYYCDGGGCHNETSAVAVSNINYINIKGTYTKEPVRFACSDSLP 375
Query: 445 CVDVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPSSNRIQTNHDIC 504
C +SL+++ELKP + +PFCW+ +G+L T T PPI C++ K ++N+D C
Sbjct: 376 CTGISLSTIELKPATGKASSLDPFCWKAHGELKTKTLPPIQCLKTEKSPEAASRSNNDAC 435
>gb|AAD46484.1| polygalacturonase PG2 [Glycine max]
Length = 439
Score = 478 bits (1229), Expect = e-133
Identities = 238/406 (58%), Positives = 289/406 (70%), Gaps = 40/406 (9%)
Query: 111 STMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPYCKP 170
+T FNVLD+GAK G DDTKAFQ ACKVE STMVVP+ VF V PISFSGP C+P
Sbjct: 39 ATTFNVLDYGAKDGGHADDTKAFQNAWVAACKVEGSTMVVPSGSVFLVKPISFSGPNCEP 98
Query: 171 NIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDPI 230
NIVFQLDG IIAPT S AWG G LQWLEFSKL ITI+GKGVIDG+GSVWW + D P
Sbjct: 99 NIVFQLDGKIIAPTGSAAWGSGTLQWLEFSKLNKITIRGKGVIDGQGSVWWNN---DSP- 154
Query: 231 DDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHLK 290
T P+ + GR +P+ KPTALRFYGS TVTGITIQNS Q HLK
Sbjct: 155 ------------TYNPTEVMLESNGR-LPSTKPTALRFYGSDGVTVTGITIQNSQQTHLK 201
Query: 291 FDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG---------------- 334
FD+C V V +S+SSPGDSPNTDGIHLQNS++V+I+SS +ACG
Sbjct: 202 FDSCTNVQVSGISVSSPGDSPNTDGIHLQNSQNVVIYSSTLACGDDCISIQTGCSDIYVH 261
Query: 335 -------HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSN 387
HGISIGSLG++NT+ACV N+T+RDV + NT+ GVRIKTWQGGSGSVQ ++FSN
Sbjct: 262 NVNCGPGHGISIGSLGRENTKACVRNVTVRDVTIQNTLTGVRIKTWQGGSGSVQNIMFSN 321
Query: 388 IQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCVD 447
+QVS VQ+PI+IDQ+YCD C N +SAVA++ I+Y IKGTYT +P++FACSD+LPC
Sbjct: 322 VQVSGVQIPILIDQYYCDGGKCRNESSAVAVSAIHYVNIKGTYTKQPIYFACSDNLPCTG 381
Query: 448 VSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPS 493
++L ++ L+ QE + PFCW+ YG+L T T PP++C+Q G PS
Sbjct: 382 ITLDTIRLESAQETKNSNVPFCWEAYGELKTKTVPPVECLQRGNPS 427
>ref|NP_917129.1| putative polygalacturonase [Oryza sativa (japonica cultivar-group)]
Length = 345
Score = 434 bits (1117), Expect = e-120
Identities = 212/344 (61%), Positives = 257/344 (74%), Gaps = 30/344 (8%)
Query: 176 LDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDPIDDEEK 235
LDGTI+APT++ AW GLLQW+EF+KL G++IQG G+I+GRG WW Y D DDE
Sbjct: 17 LDGTIVAPTSAKAWDSGLLQWIEFTKLNGVSIQGNGIINGRGQQWWT---YSDTDDDEN- 72
Query: 236 LIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNCN 295
+ TQ V+ E +MP VKPTALRFYGSF+ V GITI NS QCHLKFD+C
Sbjct: 73 -----DDTQ---YDVEFE---RMPQVKPTALRFYGSFNVVVAGITIVNSSQCHLKFDSCQ 121
Query: 296 GVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG--------------HGISIGS 341
GV+VHDV+ISSP +S NTDGIHLQNSKDV IH + +ACG HGISIG
Sbjct: 122 GVMVHDVTISSPENSLNTDGIHLQNSKDVSIHHTNLACGCSNINIHNVNCGPGHGISIGG 181
Query: 342 LGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQ 401
LG+DNT+ACVSN+T+RDVNM TM GVRIKTWQGG G VQ V FSNIQVSEVQ PI+IDQ
Sbjct: 182 LGRDNTKACVSNVTVRDVNMFRTMTGVRIKTWQGGLGLVQDVRFSNIQVSEVQTPIIIDQ 241
Query: 402 FYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCVDVSLTSVELKPVQ-E 460
FYCD+R+C+N TSAVA++G+ YE I+GT+T+KPVHFACSDS PC ++LT V+L+PVQ
Sbjct: 242 FYCDERTCSNQTSAVAVSGVQYENIRGTFTIKPVHFACSDSSPCSGITLTGVQLRPVQIS 301
Query: 461 QYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPSSNRIQTNHDIC 504
Y L PFCWQ +G+L TPT PPI C+ +GKP+ N +Q+ HD+C
Sbjct: 302 HYRLNNPFCWQAFGELYTPTVPPIACLHLGKPAGNNLQSYHDLC 345
>dbj|BAD68939.1| polygalacturonase PG1-like [Oryza sativa (japonica cultivar-group)]
gi|55297004|dbj|BAD68575.1| polygalacturonase PG1-like
[Oryza sativa (japonica cultivar-group)]
Length = 423
Score = 431 bits (1108), Expect = e-119
Identities = 212/353 (60%), Positives = 257/353 (72%), Gaps = 39/353 (11%)
Query: 176 LDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDPIDDEEK 235
LDGTI+APT++ AW GLLQW+EF+KL G++IQG G+I+GRG WW Y D DDE
Sbjct: 86 LDGTIVAPTSAKAWDSGLLQWIEFTKLNGVSIQGNGIINGRGQQWWT---YSDTDDDEN- 141
Query: 236 LIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNCN 295
+ TQ V+ E +MP VKPTALRFYGSF+ V GITI NS QCHLKFD+C
Sbjct: 142 -----DDTQ---YDVEFE---RMPQVKPTALRFYGSFNVVVAGITIVNSSQCHLKFDSCQ 190
Query: 296 GVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACG--------------------- 334
GV+VHDV+ISSP +S NTDGIHLQNSKDV IH + +ACG
Sbjct: 191 GVMVHDVTISSPENSLNTDGIHLQNSKDVSIHHTNLACGDDCVSIQTGCSNINIHNVNCG 250
Query: 335 --HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSE 392
HGISIG LG+DNT+ACVSN+T+RDVNM TM GVRIKTWQGG G VQ V FSNIQVSE
Sbjct: 251 PGHGISIGGLGRDNTKACVSNVTVRDVNMFRTMTGVRIKTWQGGLGLVQDVRFSNIQVSE 310
Query: 393 VQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCVDVSLTS 452
VQ PI+IDQFYCD+R+C+N TSAVA++G+ YE I+GT+T+KPVHFACSDS PC ++LT
Sbjct: 311 VQTPIIIDQFYCDERTCSNQTSAVAVSGVQYENIRGTFTIKPVHFACSDSSPCSGITLTG 370
Query: 453 VELKPVQ-EQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPSSNRIQTNHDIC 504
V+L+PVQ Y L PFCWQ +G+L TPT PPI C+ +GKP+ N +Q+ HD+C
Sbjct: 371 VQLRPVQISHYRLNNPFCWQAFGELYTPTVPPIACLHLGKPAGNNLQSYHDLC 423
>ref|NP_563654.1| glycoside hydrolase family 28 protein / polygalacturonase
(pectinase) family protein [Arabidopsis thaliana]
gi|66792702|gb|AAY56453.1| At1g02460 [Arabidopsis
thaliana] gi|25406725|pir||B86155 probable
polygalacturonase [imported] - Arabidopsis thaliana
gi|9972390|gb|AAG10640.1| Putative polygalacturonase
[Arabidopsis thaliana]
Length = 491
Score = 348 bits (893), Expect = 2e-94
Identities = 202/480 (42%), Positives = 271/480 (56%), Gaps = 73/480 (15%)
Query: 51 KKGNSHGNSHNQHGGGGSSSHSKPKPP------PPTHKKTPSSPLFPKPKVDP-PSTPPS 103
K+ + H N+HN H SKPKPP PPT P P P P + P PS P+
Sbjct: 33 KEKHKH-NNHNHHS-------SKPKPPSSSISQPPT--PPPGPPDSPAPSLPPSPSDDPA 82
Query: 104 NDYNGGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEAST---MVVPAAYVFYVGP 160
+D NG ++NV +GA GDG TDDT+AF+ +C E +T ++VP Y F +
Sbjct: 83 DDNNG----IYNVRKYGAVGDGETDDTEAFKTAWDSSCNNENNTDSVLLVPYGYTFMIQS 138
Query: 161 ISFSGPYCKPNIVFQLDGTIIAPTNSNAWGGGLL--QWLEFSKLVGITIQGKGVIDGRGS 218
F+GP C+ FQ+DGTI+ P +W + QWL F ++ G+ ++G+GVIDGRG
Sbjct: 139 TIFTGP-CRSYQFFQVDGTIVTPDGPESWPSNISKRQWLVFYRVNGMALKGEGVIDGRGQ 197
Query: 219 VWWQDFPYDDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTG 278
WW D P KP V P P ALRF+ S + V G
Sbjct: 198 KWW-DLPC------------------KPHRSVNKSAIVTGPCDSPIALRFFMSSNLRVEG 238
Query: 279 ITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSS--------- 329
+ I+NSPQ H +FD C GV V + I++P SPNTDGIH++NS V I++S
Sbjct: 239 LQIKNSPQFHFRFDGCQGVHVESLHITAPPLSPNTDGIHIENSNSVTIYNSIISNGDDCV 298
Query: 330 ------------KMACG---HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQ 374
+ CG HGISIGSLG N+RACVSNIT+RD + + NGVRIKTWQ
Sbjct: 299 SIGSGSYDVDIRNLTCGPGGHGISIGSLGNHNSRACVSNITVRDSVIKYSDNGVRIKTWQ 358
Query: 375 GGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVK- 433
GGSGSV GV F+NI V V+ PI+IDQ+YC + C N TSAV ++ I Y+GIKGTY ++
Sbjct: 359 GGSGSVSGVTFNNIHVDSVRNPIIIDQYYCMTKDCANKTSAVFVSDIAYQGIKGTYDIRS 418
Query: 434 -PVHFACSDSLPCVDVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKP 492
P+HF CSD++PC +++L+ +EL P + + L +PFCW YG + PP+ C+ P
Sbjct: 419 PPMHFGCSDAVPCTNLTLSDIELLPAKGEIVL-DPFCWNAYGIAEELSIPPVWCLMSDPP 477
>gb|AAM20001.1| putative polygalacturonase PG1 [Arabidopsis thaliana]
gi|15292729|gb|AAK92733.1| putative polygalacturonase
PG1 [Arabidopsis thaliana] gi|15221078|ref|NP_175244.1|
glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein
[Arabidopsis thaliana]
Length = 475
Score = 346 bits (888), Expect = 9e-94
Identities = 197/481 (40%), Positives = 262/481 (53%), Gaps = 62/481 (12%)
Query: 44 VSASLFKKKGNSHGNSHNQHGGGGSSSHSKPKPPPP---THKKTPSSPLFPKPKVDPPST 100
+S LF N ++ H G +H P PPPP T P P P DP
Sbjct: 13 ISTVLFGHFTNVARARYHYHKGRHGVTHPLPPPPPPPLETANPPDQVPSDPYPSPDP--A 70
Query: 101 PPSNDYNGGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGP 160
P +D S +F+V FGA GDG DDT AFQ AC VE+ ++ P VF +
Sbjct: 71 PGDSD----SGCVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFKITS 126
Query: 161 ISFSGPYCKPNIVFQLDGTIIAPTNSNAWG--GGLLQWLEFSKLVGITIQGKGVIDGRGS 218
FSGP CKP +VFQLDG ++ P W QWL F +L G T GKG ++G G
Sbjct: 127 TIFSGP-CKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQ 185
Query: 219 VWWQDFPYDDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQM--PAVKPTALRFYGSFSPTV 276
WW P P + G P PT +RF+ S + V
Sbjct: 186 KWWD----------------------LPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEV 223
Query: 277 TGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMA---- 332
G+ IQNSPQ H+KFD C GVL++++ ISSP SPNTDGIHL N++ V I++S ++
Sbjct: 224 KGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDD 283
Query: 333 -----------------CG--HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTW 373
CG HGISIGSLG N++ACVSNIT+R+ + ++ NG+R+KTW
Sbjct: 284 CISIGTGCSDVDIQGVTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTW 343
Query: 374 QGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVK 433
QGG+GSV +LF NIQ+ V I++DQ+YC + C N TSAV + + Y IKGTY V+
Sbjct: 344 QGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKDCRNETSAVKVFDVEYRNIKGTYDVR 403
Query: 434 --PVHFACSDSLPCVDVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGK 491
P+HFACSD++ C +++++ VEL P +E + +PFCW YG+ T T PPIDC+ G
Sbjct: 404 SPPIHFACSDTVACTNITMSEVELLP-EEGELVDDPFCWNAYGKQETLTIPPIDCLLDGS 462
Query: 492 P 492
P
Sbjct: 463 P 463
>gb|AAK95305.1| At1g48100/F21D18_17 [Arabidopsis thaliana]
Length = 475
Score = 346 bits (888), Expect = 9e-94
Identities = 197/481 (40%), Positives = 262/481 (53%), Gaps = 62/481 (12%)
Query: 44 VSASLFKKKGNSHGNSHNQHGGGGSSSHSKPKPPPP---THKKTPSSPLFPKPKVDPPST 100
+S LF N ++ H G +H P PPPP T P P P DP
Sbjct: 13 ISTVLFGHFTNVARARYHYHKGRHGVTHPLPPPPPPPLETANPPDQVPSDPYPSPDP--A 70
Query: 101 PPSNDYNGGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGP 160
P +D S +F+V FGA GDG DDT AFQ AC VE+ ++ P VF +
Sbjct: 71 PGDSD----SGCVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFRITS 126
Query: 161 ISFSGPYCKPNIVFQLDGTIIAPTNSNAWG--GGLLQWLEFSKLVGITIQGKGVIDGRGS 218
FSGP CKP +VFQLDG ++ P W QWL F +L G T GKG ++G G
Sbjct: 127 TIFSGP-CKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQ 185
Query: 219 VWWQDFPYDDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQM--PAVKPTALRFYGSFSPTV 276
WW P P + G P PT +RF+ S + V
Sbjct: 186 KWWD----------------------LPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEV 223
Query: 277 TGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMA---- 332
G+ IQNSPQ H+KFD C GVL++++ ISSP SPNTDGIHL N++ V I++S ++
Sbjct: 224 KGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDD 283
Query: 333 -----------------CG--HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTW 373
CG HGISIGSLG N++ACVSNIT+R+ + ++ NG+R+KTW
Sbjct: 284 CISIGTGCSDVDIQGVTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTW 343
Query: 374 QGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVK 433
QGG+GSV +LF NIQ+ V I++DQ+YC + C N TSAV + + Y IKGTY V+
Sbjct: 344 QGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKDCRNETSAVKVFDVEYRNIKGTYDVR 403
Query: 434 --PVHFACSDSLPCVDVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGK 491
P+HFACSD++ C +++++ VEL P +E + +PFCW YG+ T T PPIDC+ G
Sbjct: 404 SPPIHFACSDTVACTNITMSEVELLP-EEGELVDDPFCWNAYGKQETLTIPPIDCLLDGS 462
Query: 492 P 492
P
Sbjct: 463 P 463
>ref|NP_908534.1| putative polygalacturonase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 503
Score = 344 bits (882), Expect = 4e-93
Identities = 189/463 (40%), Positives = 262/463 (55%), Gaps = 59/463 (12%)
Query: 62 QHGGGGSSSHSKPKPPPPTHKKTPSSPLFPKPKVDP-PSTPPSNDYNGGSSTMFNVL-DF 119
+H G + H P P P +P P P DP P PS G++T+++++ DF
Sbjct: 59 RHAPGPARHHGAPAPHPGRRSPPAPAPANP-PSSDPMPGGAPSAAPAAGAATVYDIVKDF 117
Query: 120 GAKGDGRTDDTKAFQATCAMACKVEASTMVVPAA-YVFYVGPISFSGPYCKPNIVFQLDG 178
GA GDG TDDT A + AC + + +V+ AA F + F+GP C+ ++ Q+DG
Sbjct: 118 GAAGDGVTDDTDALKTAWDTACADDGAGVVLAAAGRSFLIHTTVFTGP-CQGSVTLQVDG 176
Query: 179 TIIAPTNSNAW-GGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDPIDDEEKLI 237
TI+AP+ W WL F + G+++ G G+IDG+G WW
Sbjct: 177 TIVAPSEPATWPANNKRNWLVFYRADGVSLVGAGLIDGKGQKWWD--------------- 221
Query: 238 VPLNHTQKPSLPVQNEMGRQM--PAVKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNCN 295
LP + G P P A+RF S + TV G+ +QNSP+ H +FDNCN
Sbjct: 222 ----------LPCKPHKGGNTHGPCDSPVAMRFAISNNVTVRGLKVQNSPEFHFRFDNCN 271
Query: 296 GVLVHDVSISSPGDSPNTDGIHLQNSKDVLI---------------------HSSKMACG 334
GV V +SISSP SPNTDGIH++N+ DVLI H + CG
Sbjct: 272 GVRVDGLSISSPALSPNTDGIHVENTSDVLITNTVVSNGDDCVSIGAGTLNVHIENVTCG 331
Query: 335 --HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSE 392
HGISIGSLGK T+ACV+N+T+R+ + ++ NGVRIKTWQGGSGSV V F N+++
Sbjct: 332 PGHGISIGSLGKAGTKACVANVTVRNAVIRHSDNGVRIKTWQGGSGSVSAVAFENVRMDA 391
Query: 393 VQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVK--PVHFACSDSLPCVDVSL 450
V+ PI+IDQ+YC +SC N T+AV + G++Y GI+GTY V+ P+HF CSD++PC +++L
Sbjct: 392 VRNPIIIDQYYCLSKSCENETTAVFVNGVSYSGIRGTYDVRGPPIHFGCSDAVPCTNITL 451
Query: 451 TSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPS 493
+ VEL P + EPFCW YG TPT PP+ C+ G P+
Sbjct: 452 SDVELLPASGD-TVDEPFCWNVYGNAATPTVPPVSCLSSGFPN 493
>gb|AAF79535.1| F21D18.18 [Arabidopsis thaliana] gi|25405916|pir||C96521 protein
F21D18.18 [imported] - Arabidopsis thaliana
Length = 492
Score = 341 bits (875), Expect = 3e-92
Identities = 198/484 (40%), Positives = 266/484 (54%), Gaps = 51/484 (10%)
Query: 44 VSASLFKKKGNSHGNSHNQHGGGGSSSHSKPKPPPP---THKKTPSSPLFPKPKVDPPST 100
+S LF N ++ H G +H P PPPP T P P P DP
Sbjct: 13 ISTVLFGHFTNVARARYHYHKGRHGVTHPLPPPPPPPLETANPPDQVPSDPYPSPDP--A 70
Query: 101 PPSNDYNGGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGP 160
P +D S +F+V FGA GDG DDT AFQ AC VE+ ++ P VF +
Sbjct: 71 PGDSD----SGCVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFKITS 126
Query: 161 ISFSGPYCKPNIVFQLDGTIIAPTNSNAWG--GGLLQWLEFSKLVGITIQGKGVIDGRGS 218
FSGP CKP +VFQLDG ++ P W QWL F +L G T GKG ++G G
Sbjct: 127 TIFSGP-CKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQ 185
Query: 219 VWWQDFPYD-----DPIDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFS 273
WW D P D P KP+ ++ + M +RF+ S +
Sbjct: 186 KWW-DLPCKPHRGPDGSSSSGPCASPTVSLLKPNQIIKLDRFYLM-------IRFFMSNN 237
Query: 274 PTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMA- 332
V G+ IQNSPQ H+KFD C GVL++++ ISSP SPNTDGIHL N++ V I++S ++
Sbjct: 238 IEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSN 297
Query: 333 --------------------CG--HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRI 370
CG HGISIGSLG N++ACVSNIT+R+ + ++ NG+R+
Sbjct: 298 GDDCISIGTGCSDVDIQGVTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRV 357
Query: 371 KTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTY 430
KTWQGG+GSV +LF NIQ+ V I++DQ+YC + C N TSAV + + Y IKGTY
Sbjct: 358 KTWQGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKDCRNETSAVKVFDVEYRNIKGTY 417
Query: 431 TVK--PVHFACSDSLPCVDVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQ 488
V+ P+HFACSD++ C +++++ VEL P +E + +PFCW YG+ T T PPIDC+
Sbjct: 418 DVRSPPIHFACSDTVACTNITMSEVELLP-EEGELVDDPFCWNAYGKQETLTIPPIDCLL 476
Query: 489 IGKP 492
G P
Sbjct: 477 DGSP 480
>ref|XP_476272.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|46485878|gb|AAS98503.1| unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 504
Score = 335 bits (858), Expect = 3e-90
Identities = 185/479 (38%), Positives = 268/479 (55%), Gaps = 51/479 (10%)
Query: 48 LFKKKGNSHGNSHNQHGGGGSSSHSKPKPPPPTHKKTPSSPLFPKPKVDPPSTPPSNDYN 107
+ KK G QH GGG+ S PP + P + P V P
Sbjct: 35 IHKKPHGGGGGGGRQHRGGGTVVSSPAVPPADEQTQPPG--IVPSDPVIPAQP------- 85
Query: 108 GGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPY 167
+F+V FGA GDG TDDT+AF+A AC VE++ + VP+ F + +F+GP
Sbjct: 86 --EQCVFDVRAFGAVGDGTTDDTEAFRAAWRAACAVESAVISVPSDGTFTITTTTFTGP- 142
Query: 168 CKPNIVFQLDGTIIAPTNSNAW--GGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFP 225
CKP +VFQ+DG ++ P + W QWL FS L G+T++G G I+G G WW + P
Sbjct: 143 CKPGLVFQVDGVLMPPDGPDCWPPSDNRRQWLVFSNLDGLTLRGAGTIEGNGEGWW-NLP 201
Query: 226 YDDPI-----DDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGIT 280
E +V LN Q P N + P PT +RF+ S + V G+
Sbjct: 202 CKPHRLARLNTGSEFALVTLNSVQGP-----NGSTLRGPCDSPTLVRFFMSRNLVVEGLR 256
Query: 281 IQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSS----------- 329
++NSP+ H +FD C+ V V +SI SP +SPNTDGIH++N++ V I++S
Sbjct: 257 VENSPEFHFRFDGCSDVRVDGLSIRSPANSPNTDGIHVENTQRVAIYNSMISNGDDCISI 316
Query: 330 ----------KMACG--HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGS 377
++CG HGISIGSLG N++ACV+N+T+R+ + N+ NG+RIKTWQGG
Sbjct: 317 GTGSYDVDIQNVSCGPGHGISIGSLGVHNSQACVANVTVRNAVIRNSDNGLRIKTWQGGM 376
Query: 378 GSVQGVLFSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVK--PV 435
GSV G+ F + + V+ I+IDQ+YC + C N ++AV + ++Y ++G+Y V+ P+
Sbjct: 377 GSVSGINFDTVSMENVRNCIIIDQYYCLDKRCMNQSTAVHVTDVSYANVRGSYDVRAAPI 436
Query: 436 HFACSDSLPCVDVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPSS 494
HFACSD++PC +++++ VEL P + + +PFCW YG TPT PPI C+Q G P S
Sbjct: 437 HFACSDTVPCTNITMSEVELLPFSGEL-VDDPFCWSAYGLQQTPTIPPIYCLQDGLPDS 494
>emb|CAA66811.1| polygalacturonase-like protein [Arabidopsis thaliana]
gi|26450320|dbj|BAC42276.1| putative polygalacturonase
[Arabidopsis thaliana] gi|9293940|dbj|BAB01843.1|
polygalacturonase [Arabidopsis thaliana]
gi|15231579|ref|NP_189293.1| polygalacturonase, putative
/ pectinase, putative [Arabidopsis thaliana]
Length = 470
Score = 334 bits (857), Expect = 3e-90
Identities = 173/418 (41%), Positives = 240/418 (57%), Gaps = 53/418 (12%)
Query: 94 KVDPPSTPPSNDYNGGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAA 153
K P +P Y + +FN+ +GAKGDG +DD+KA ACKV + +PA
Sbjct: 47 KNTPTGSPAPAPYPSTNEGVFNIFSYGAKGDGVSDDSKALVGAWKAACKVVGGKVEIPAG 106
Query: 154 YVFYVGPISFSGPYCKPNIVFQLDGTIIAPTNSNAW-GGGLLQWLEFSKLVGITIQGKGV 212
F V ++ GP CK V Q++G ++AP +W L QWL F + +TIQG G
Sbjct: 107 TQFLVKAVTLQGP-CKEETVVQIEGILVAPEKIGSWPNSSLFQWLNFKWVSHLTIQGSGT 165
Query: 213 IDGRGSVWWQDFPYDDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSF 272
++GRG WW Y + +P +KPTALRFY S
Sbjct: 166 LNGRGYNWWNLDTYQT-----------------------QTRNKYIPPMKPTALRFYSSN 202
Query: 273 SPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMA 332
+ TV I+I NSP CHLKFD+ +GV V++++ISSP +SPNTDGIHLQN+++V I S +A
Sbjct: 203 NVTVRDISIVNSPLCHLKFDDSDGVKVNNITISSPENSPNTDGIHLQNTRNVEIQHSNIA 262
Query: 333 CG-----------------------HGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVR 369
CG HGISIG LGKD + ACVS+I + D+++ NT+ GVR
Sbjct: 263 CGDDCVSIQTGSSNVHIHHINCGPGHGISIGGLGKDKSVACVSDIIVEDISIQNTLAGVR 322
Query: 370 IKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGT 429
IKTWQGG G V+ + FSNIQV +V++PIVIDQ+YCDK C N T AV+++G+ Y I G+
Sbjct: 323 IKTWQGGLGVVKNLTFSNIQVKDVKVPIVIDQYYCDKSKCKNQTRAVSISGVKYNNIVGS 382
Query: 430 YTVKPVHFACSDSLPCVDVSLTSVELKPV-----QEQYHLYEPFCWQTYGQLMTPTTP 482
+TV+PV ACS+++PC+DV L + L+P + + + CW +YG+ P P
Sbjct: 383 FTVQPVRIACSNNVPCMDVDLMDIRLRPSGGIRGLQTHQQQQALCWNSYGKTQGPLVP 440
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 990,933,846
Number of Sequences: 2540612
Number of extensions: 47808340
Number of successful extensions: 233528
Number of sequences better than 10.0: 958
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 425
Number of HSP's that attempted gapping in prelim test: 224943
Number of HSP's gapped (non-prelim): 5175
length of query: 504
length of database: 863,360,394
effective HSP length: 132
effective length of query: 372
effective length of database: 527,999,610
effective search space: 196415854920
effective search space used: 196415854920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0008.5