BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0400a.3
         (419 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g27930 unknown protein                                             449  e-126
At3g59160 putative protein                                             34  0.13
At2g32810 putative beta-galactosidase (BGAL9)                          32  0.50
At2g04300 putative receptor-like protein kinase                        32  0.65
At5g49280 predicted GPI-anchored protein                               30  2.5
At1g30780 hypothetical protein                                         30  2.5
At5g11350 unknown protein                                              29  4.2
At3g59170 putative protein                                             29  4.2
At1g74190 disease resistance protein, putative                         29  5.5
At4g15160 cell wall protein like                                       28  7.2
At4g32285 unknown protein                                              28  9.4

>At3g27930 unknown protein
          Length = 425

 Score =  449 bits (1155), Expect = e-126
 Identities = 222/367 (60%), Positives = 271/367 (73%), Gaps = 22/367 (5%)

Query: 6   VKPPPPPLVVLVPPLFDFPPLAARNRMLESSYDVVFGKLALRCLFNDYFQSPKHFTTRIM 65
           VK  PPP VVLVPPLFD+PPL+AR RMLESSY+++FGKLALRCLF DYF+    FT + +
Sbjct: 6   VKKEPPPPVVLVPPLFDYPPLSARTRMLESSYNLLFGKLALRCLFEDYFEEANRFTGKFL 65

Query: 66  FKPIDEPHVDLIATVSGPLDHKPEESITGNALFRWQR------------------ILRMR 107
            KP D+PHVDL+A+VSG +D + E    GNA FRWQ                   +L MR
Sbjct: 66  LKPTDDPHVDLVASVSGAVDGRVEGDFVGNAEFRWQSDVDDPHTFVDLSVSTSNPVLLMR 125

Query: 108 SCAYYPRYGFGAFGVFPLLLR-KREFSEDYGLMGLRYGSGNLSFGVTLMPFAKKDELPKS 166
           S AYYP+YG GAF V+PL+ +   + SE+Y +MGLRYGS NLS G T+ PF+  +ELPK 
Sbjct: 126 SSAYYPKYGIGAFAVYPLISKITGKSSEEYRIMGLRYGSTNLSVGATVTPFSANNELPKH 185

Query: 167 AWLVSKMGRLTAGVQYEPQHGN---AKLSNLMNWSCAMAYGVGSGSPLSPSFNFSLELVK 223
           AWLVSKMG LT GVQYEP HG+   AK ++  NWSCA  YGVGS SPL+PSFN  +EL +
Sbjct: 186 AWLVSKMGSLTVGVQYEPLHGSKDLAKYTDPRNWSCAAGYGVGSQSPLTPSFNIGIELAR 245

Query: 224 SSQFVASFYQHMVVQRRVKNPLEENGVIGITNYIDFGFELQTSVDDAIATNNISDSTFRI 283
           SSQF+ASFYQH+VVQRRV+NP EEN V+GITNYIDFGFELQ+ VDD+    N  DS  ++
Sbjct: 246 SSQFIASFYQHVVVQRRVQNPFEENQVVGITNYIDFGFELQSRVDDSKTPPNAPDSLLQV 305

Query: 284 GASWQANKNFLLKAKVGPRISSMALAFKSWWKPSFTFSISATRDRADGQIQYGFGIQSES 343
            ASWQANKNFLLK KVG   S+++LAFKSWWKPSF F+ISAT +   G +Q GFG++ ++
Sbjct: 306 AASWQANKNFLLKGKVGAHSSTLSLAFKSWWKPSFAFNISATTNHRTGNVQCGFGLRVDN 365

Query: 344 LREASFQ 350
           LREAS+Q
Sbjct: 366 LREASYQ 372


>At3g59160 putative protein
          Length = 464

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 207 SGSPLSPSFNFSLELVKSSQFVASFYQHMVVQRRVKNPLEENGVIGITNYID 258
           S S LS  + + L  V + +F  S Y H    +RVKNPL E G++G    +D
Sbjct: 37  STSLLSRRWRYLLAFVPNLEFDDSAYLHR--DKRVKNPLHEKGLVGFVLTVD 86


>At2g32810 putative beta-galactosidase (BGAL9)
          Length = 887

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 15/98 (15%)

Query: 120 FGVFPLLLRKREFSEDYGLMGLRYGSGNLSFGVTLMPFAKKD-ELPKSAWLVSKMGRLTA 178
           FG FP+ LR         + G+ + + N  F   +  F  K  +L + A L    G    
Sbjct: 136 FGGFPVWLRD--------IPGIEFRTDNEPFKKEMQKFVTKIVDLMREAKLFCWQGGPII 187

Query: 179 GVQYEPQHGNAKLS------NLMNWSCAMAYGVGSGSP 210
            +Q E ++G+ + S      + + W+ +MA G+G+G P
Sbjct: 188 MLQIENEYGDVEKSYGQKGKDYVKWAASMALGLGAGVP 225


>At2g04300 putative receptor-like protein kinase
          Length = 851

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 28/97 (28%), Positives = 44/97 (44%), Gaps = 14/97 (14%)

Query: 207 SGSPLSPS--FNFSLELVKSSQFVASFYQHMVVQRRVKNPLEE-----NG------VIGI 253
           + +P+S +  FNF+  L+ S+    S+     +Q    N   E     NG       + +
Sbjct: 256 ASTPISKNAPFNFTWSLIPSTAKFYSYMHFADIQTLQANETREFDMMLNGNLALERALEV 315

Query: 254 TNYIDFGFELQTSVDDAIATNNISDSTFRIGASWQAN 290
              IDF  EL+T+ DD IA  NI ++      SWQ +
Sbjct: 316 FTVIDFP-ELETNQDDVIAIKNIQNTYGVSKTSWQGD 351


>At5g49280 predicted GPI-anchored protein
          Length = 162

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/39 (33%), Positives = 20/39 (50%)

Query: 8   PPPPPLVVLVPPLFDFPPLAARNRMLESSYDVVFGKLAL 46
           PPP P+V   P  +  PP  + +    SSY ++F   A+
Sbjct: 119 PPPNPIVPYFPFYYHTPPPGSGSDRFMSSYSIIFALFAV 157


>At1g30780 hypothetical protein
          Length = 481

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 2   FRKEVKPPPPP--LVVLVPPLFDFPPL 26
           F++ V PPPPP  L +L PPL D P L
Sbjct: 158 FQEAVAPPPPPPDLPLLAPPLPDVPLL 184


>At5g11350 unknown protein
          Length = 754

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 372 SYNILGVDSASKHQDLYSNIRHSFQNNGFKGVGKDYTGDARDGC 415
           S +I+ +    K QDL   ++H     G+  + K  TG+A DGC
Sbjct: 229 SADIMCLQEVDKFQDLEEEMKH----RGYSAIWKMRTGNAVDGC 268


>At3g59170 putative protein
          Length = 473

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 207 SGSPLSPSFNFSLELVKSSQFVASFYQHMVVQRRVKNPLEENGVIG 252
           S S LS  + + L  V + +F  S Y H    +RVKN L E G +G
Sbjct: 31  STSLLSRRWRYLLAFVPNLEFDDSVYLHR--DKRVKNTLHEKGFVG 74


>At1g74190 disease resistance protein, putative
          Length = 965

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 274 NNISDSTFRIGASWQANKNFLLKAKVGPRISSMALAFKSWWKPSFTFSISATR 326
           +N  + +F  G+   AN + L+  K+  + SS+ +  +S WKP F  S+ A R
Sbjct: 301 DNDFEGSFSFGSL--ANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALR 351


>At4g15160 cell wall protein like
          Length = 428

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 6   VKPPPPPLVVLVPPLFDFPP 25
           VKPPPPP V   PP +  PP
Sbjct: 95  VKPPPPPTVKPPPPPYVKPP 114


>At4g32285 unknown protein
          Length = 635

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/58 (25%), Positives = 28/58 (47%)

Query: 157 FAKKDELPKSAWLVSKMGRLTAGVQYEPQHGNAKLSNLMNWSCAMAYGVGSGSPLSPS 214
           + +  E+ K  +L+++  +L    Q E   G A L+ +     AM YG+   + + PS
Sbjct: 568 YVQMAEMDKKQYLLTQEQQLWQQYQQEGMRGQASLAKMNTAQTAMPYGMPPVNGMGPS 625


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,999,827
Number of Sequences: 26719
Number of extensions: 434919
Number of successful extensions: 1865
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1834
Number of HSP's gapped (non-prelim): 24
length of query: 419
length of database: 11,318,596
effective HSP length: 102
effective length of query: 317
effective length of database: 8,593,258
effective search space: 2724062786
effective search space used: 2724062786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)