BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0369a.2
         (1602 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g04420 putative transposon protein                                 131  4e-30
At2g07080 putative gag-protease polyprotein                           112  2e-24
At3g59720 copia-type reverse transcriptase-like protein                94  8e-19
At1g58140 hypothetical protein                                         92  2e-18
At1g48710 hypothetical protein                                         92  3e-18
At3g61330 copia-type polyprotein                                       91  5e-18
At2g05930 copia-like retroelement pol polyprotein                      86  2e-16
At1g32590 hypothetical protein, 5' partial                             82  2e-15
At3g60170 putative protein                                             79  3e-14
At2g15650 putative retroelement pol polyprotein                        78  5e-14
At4g04560 putative transposon protein                                  73  2e-12
At1g36110 hypothetical protein                                         71  4e-12
At2g05390 putative retroelement pol polyprotein                        70  8e-12
At3g21010 unknown protein                                              68  4e-11
At2g07550 putative retroelement pol polyprotein                        61  6e-09
At3g31380 hypothetical protein                                         60  1e-08
At3g28770 hypothetical protein                                         58  5e-08
At4g10460 putative retrotransposon                                     57  9e-08
At3g55300 putative protein                                             55  3e-07
At3g25450 hypothetical protein                                         54  7e-07

>At4g04420 putative transposon protein
          Length = 1008

 Score =  131 bits (329), Expect = 4e-30
 Identities = 115/503 (22%), Positives = 228/503 (44%), Gaps = 66/503 (13%)

Query: 1   LESFFLGFDADLWDIIVDGYERPV--DTDGKKIPRSE---MTADQKKLYSQHHKARAILL 55
           + +   G   + W     G++ PV    DG+ + +++     A++ K  + + +A +++ 
Sbjct: 28  MRALIRGLGKEAWIATSIGWKAPVIKGEDGEDVLKTKDQWNDAEEAKAKA-NSRALSLIF 86

Query: 56  SAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEM 115
           + ++  ++++I + E AK  +D L  ++EG   VK S+   L  ++E+  ME  E+IEE 
Sbjct: 87  NFVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLSMEETENIEEF 146

Query: 116 FSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISIL 175
             +   + +    L K Y  K  V +++RCLP  +    T++  + D +++  EE++ +L
Sbjct: 147 SGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTDSIDFEEVVGML 206

Query: 176 KCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKR 235
           + +EL+ +  +    K +AL + ++K ++++ K                  D +++++K 
Sbjct: 207 QAYELEITSGKGGYSKGLALAASAKKNEIQELK------------------DTMSMMAKD 248

Query: 236 LNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLK-KDKKP 294
            +R  +  + K  G  +   +Y     K+    E+ C EC+  GH K++CP LK KD K 
Sbjct: 249 FSRAMRRVEKKGFGRNQGTDRYRDRSSKRD---EIQCHECQGYGHIKAECPSLKRKDLKC 305

Query: 295 KK--------------HFKTKKSLMVTFDESESEDVDSDGEVQGLMAIV-----KDKGAE 335
            +                K  KS   +  ES+S D DS+  ++G ++ V     KD+ ++
Sbjct: 306 SECNGLGHTKFDCVGSKSKPDKSCS-SESESDSNDGDSEDYIKGFVSFVGIIEEKDESSD 364

Query: 336 SKEAVDSDSESEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAV 395
           S EA   D ++  D +SD E +V              +I +++  L  +   L K   A 
Sbjct: 365 S-EADGEDEDNSADEDSDIEKDV--------------NINEEFRKLYDSWLMLSKEKVAW 409

Query: 396 SKTPSEHEKIISDLKNENHALVNSNSVLKNQIAKLEE---IVACDASDCRNESKYEKSFQ 452
            +   + +++   LK E  A    NS L  + +  EE    ++ + SD R       S  
Sbjct: 410 LEEKLKVQELTEKLKGELTAANQKNSELIQKCSVAEEKNRELSQELSDTRKNIHMLNSGT 469

Query: 453 RFLAKSVDRSLMASMIYGVSRNG 475
           + L   +    +    +G+  NG
Sbjct: 470 KDLDSILAAGRVGKSNFGLGYNG 492


>At2g07080 putative gag-protease polyprotein
          Length = 627

 Score =  112 bits (279), Expect = 2e-24
 Identities = 98/424 (23%), Positives = 189/424 (44%), Gaps = 47/424 (11%)

Query: 27  DGKKI--PRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHE 84
           DG KI  P++  TA++K     + +A   + + +  +E++ I   + AK  +D+L+ SHE
Sbjct: 37  DGFKITKPKANWTAEEKLQSKFNARAMKAIFNGVDEDEFKLIQGCKSAKQAWDTLQKSHE 96

Query: 85  GNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIR 144
           G   VK ++   +  ++E   MEP+E I +  S+   L      + K+Y  +  V +++R
Sbjct: 97  GTSSVKRTRLDHIATQFEYLKMEPDEKIVKFSSKISALANEAEVMGKTYKDQKLVKKLLR 156

Query: 145 CLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKKKSIALKSKSEKAKV 204
           CLP  +      + +  + + +S  +L+ +LK  E+K  +               +K K 
Sbjct: 157 CLPPKFAAHKAVMRVAGNTDKISFVDLVGMLKLEEMKADQ---------------DKVKP 201

Query: 205 EKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKK 264
            K+ A  A ++ SE+  E   +D + L+++   +  K  +   + S     + E+   +K
Sbjct: 202 SKNIAFNA-DQGSEQFQE--IKDGMALLARNFGKALKRVEIDGERSRGRFSRSENDDLRK 258

Query: 265 SSIKEVTCFECKESGHYKSDCPKLKKDKK---------------PKKHFKTKKSLMVTFD 309
              KE+ C+EC   GH K +CP  K+ +                P K  K K+  +++F 
Sbjct: 259 K--KEIQCYECGGFGHIKPECPITKRKEMKCLKCKGVGHTKFECPNKS-KLKEKSLISFS 315

Query: 310 ESESEDVDSDGEVQGLMAIVKDKGAESKEAVDSDSESEGDPNSDDENEVFASFSTSELKH 369
           +SES+D   +GE              SK   D+DS+ + + N  D+  V         K 
Sbjct: 316 DSESDD---EGEELLNFVAFMASSDSSKFMSDTDSDCDEELNPKDKYRVLYDSWVQLSKD 372

Query: 370 ALSDIMDKYN---SLLSTHKKLKKNLSAVS---KTPSEHEKIISDLKNENHALVNSNSVL 423
            L  + +K      L +   + K+ LS ++    +   ++K +  L+ E H   +   +L
Sbjct: 373 KLKLVKEKLTLEAKLANVSTEDKQKLSGITVDGNSQDYYQKKLDCLQKECHRERDRTKLL 432

Query: 424 KNQI 427
           + ++
Sbjct: 433 EREL 436


>At3g59720 copia-type reverse transcriptase-like protein
          Length = 1272

 Score = 93.6 bits (231), Expect = 8e-19
 Identities = 72/320 (22%), Positives = 153/320 (47%), Gaps = 36/320 (11%)

Query: 11  DLWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDRE 70
           D+W+I+  G+  P +       + +   D +K   +  KA  ++   +  + ++K+ +  
Sbjct: 33  DVWEIVEKGFIEPENEGSLSQTQKDGLRDSRK---RDKKALCLIYQGLDEDTFEKVVEAT 89

Query: 71  FAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLN 130
            AK  ++ L+ S++G  +VK+ +  +L  ++E+  M+  E + + FSR   +   ++   
Sbjct: 90  SAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNG 149

Query: 131 KSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKK 190
           +       + +++R L   +  +VT IE T+D+E M++E+L+  L+ +E K+ + +D+  
Sbjct: 150 EKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDI-- 207

Query: 191 KSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISK---RLNRIWK----HR 243
                        VE+   +Q  +EE+ ++ +     ++    +      R W+    + 
Sbjct: 208 -------------VEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNT 254

Query: 244 QSKFKGSGRAKGK-YESSGQKKSSIKEVTCFECKESGHYKSDC--PKLKKDKKPKKHFKT 300
             + + S R +GK +  S   KSS+K   C+ C + GHY S+C  P  KK K+   + + 
Sbjct: 255 NQRGENSSRGRGKGHPKSRYDKSSVK---CYNCGKFGHYASECKAPSNKKFKEKANYVEE 311

Query: 301 K-----KSLMVTFDESESED 315
           K       LM ++ + E E+
Sbjct: 312 KIQEEDMLLMASYKKDEQEE 331


>At1g58140 hypothetical protein
          Length = 1320

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 71/320 (22%), Positives = 153/320 (47%), Gaps = 36/320 (11%)

Query: 11  DLWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDRE 70
           D+W+I+  G+  P +       + +   D +K   +  KA  ++   +  + ++K+ +  
Sbjct: 33  DVWEIVEKGFIEPENEGSLSQTQKDGLRDSRK---RDKKALCLIYQGLDEDTFEKVVEAT 89

Query: 71  FAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLN 130
            AK  ++ L+ S++G  +VK+ +  +L  ++E+  M+  E + + FSR   +   ++   
Sbjct: 90  SAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNG 149

Query: 131 KSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKK 190
           +       + +++R L   +  +VT IE T+D+E M++E+L+  L+ +E K+ + +D+  
Sbjct: 150 EKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDI-- 207

Query: 191 KSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISK---RLNRIWK----HR 243
                        VE+   +Q  +EE+ ++ +     ++    +      R W+    + 
Sbjct: 208 -------------VEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNT 254

Query: 244 QSKFKGSGRAKGK-YESSGQKKSSIKEVTCFECKESGHYKSDC--PKLKKDKKPKKHFKT 300
             + + S R +GK +  S   KSS+K   C+ C + GHY S+C  P  KK ++   + + 
Sbjct: 255 NQRGENSSRGRGKGHPKSRYDKSSVK---CYNCGKFGHYASECKAPSNKKFEEKANYVEE 311

Query: 301 K-----KSLMVTFDESESED 315
           K       LM ++ + E E+
Sbjct: 312 KIQEEDMLLMASYKKDEQEE 331


>At1g48710 hypothetical protein
          Length = 1352

 Score = 91.7 bits (226), Expect = 3e-18
 Identities = 70/320 (21%), Positives = 153/320 (46%), Gaps = 36/320 (11%)

Query: 11  DLWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDRE 70
           D+W+I+  G+  P +       + +   D +K   +  KA  ++   +  + ++K+ +  
Sbjct: 33  DVWEIVEKGFIEPENEGSLSQTQKDGLRDSRK---RDKKALCLIYQGLDEDTFEKVVEAT 89

Query: 71  FAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLN 130
            AK  ++ L+ S++G  +VK+ +  +L  ++E+  M+  E + + FSR   +   ++   
Sbjct: 90  SAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNG 149

Query: 131 KSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKK 190
           +       + +++R L   +  +VT IE T+D+E M++E+L+  L+ +E K+ + +D+  
Sbjct: 150 EKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDI-- 207

Query: 191 KSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISK---RLNRIWK----HR 243
                        +E+   +Q  +EE+ ++ +     ++    +      R W+    + 
Sbjct: 208 -------------IEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNT 254

Query: 244 QSKFKGSGRAKGK-YESSGQKKSSIKEVTCFECKESGHYKSDC--PKLKKDKKPKKHFKT 300
             + + S R +GK +  S   KSS+K   C+ C + GHY S+C  P  KK ++   + + 
Sbjct: 255 NQRGENSSRGRGKGHPKSRYDKSSVK---CYNCGKFGHYASECKAPSNKKFEEKANYVEE 311

Query: 301 K-----KSLMVTFDESESED 315
           K       LM ++ + E E+
Sbjct: 312 KIQEEDMLLMASYKKDEQEE 331


>At3g61330 copia-type polyprotein
          Length = 1352

 Score = 90.9 bits (224), Expect = 5e-18
 Identities = 69/331 (20%), Positives = 151/331 (44%), Gaps = 58/331 (17%)

Query: 11  DLWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDRE 70
           D+W+I+  G+  P +       + +   D +K   +  KA  ++   +  + ++K+ +  
Sbjct: 33  DVWEIVEKGFIEPENEGSLSQTQKDGLRDSRK---RDKKALCLIYQGLDEDTFEKVVEAT 89

Query: 71  FAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLN 130
            AK  ++ L+ S++G  +VK+ +  +L  ++E+  M+  E + + FSR   +   ++   
Sbjct: 90  SAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNG 149

Query: 131 KSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKK 190
           +       + +++R L   +  +VT IE T+D+E M++E+L+  L+ +E K+ + +D+ +
Sbjct: 150 EKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDIAE 209

Query: 191 KSIALKSKSE------------------KAKVEKSKALQAEEEESEEASEDSDEDELTLI 232
           + + ++   E                  +      +  +  E+ + +  E+S        
Sbjct: 210 QVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTNQRGENS-------- 261

Query: 233 SKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDK 292
                       S+ +G G  K +Y+     KSS+K   C+ C + GHY S+C K   +K
Sbjct: 262 ------------SRGRGKGHPKSRYD-----KSSVK---CYNCGKFGHYASEC-KAPSNK 300

Query: 293 K--PKKHFKTKK------SLMVTFDESESED 315
           K   K H+  +K       LM ++ + E ++
Sbjct: 301 KFEEKAHYVEEKIQEEDMLLMASYKKDEQKE 331


>At2g05930 copia-like retroelement pol polyprotein
          Length = 916

 Score = 85.5 bits (210), Expect = 2e-16
 Identities = 58/250 (23%), Positives = 120/250 (47%), Gaps = 23/250 (9%)

Query: 1   LESFFLGFDADLWDIIVDGYERPV--DTDGKKIPRSE---MTADQKKLYSQHHKARAILL 55
           + +   G   + W     G++ PV    DG+ + ++E     A++ K  + + +A +++ 
Sbjct: 40  MRALIRGLGKEAWIATSIGWKAPVIKGEDGEDVLKTEDQWNDAEEAKA-TANSRALSLIF 98

Query: 56  SAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEM 115
           ++++  ++++I + E AK  +D L  ++EG   VK S+   L  ++E+  ME  E+IEE 
Sbjct: 99  NSVNQNQFKQIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLTMEETENIEEF 158

Query: 116 FSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISIL 175
             +   + +    L K Y  K  V +++RCLP  +    T++  + D  ++  EE++ + 
Sbjct: 159 SGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTNSIDFEEVVGMF 218

Query: 176 KCHELK-----------RSEMQDLKKKSIALKSKSEKAKVE------KSKALQAEEEESE 218
           + +EL+           ++E   LK+K +          ++      KSK  ++   ESE
Sbjct: 219 QAYELEITSGKGGYGHIKAECPSLKRKDLKCSECKGLGHIKFDCVGSKSKPDRSCSSESE 278

Query: 219 EASEDSDEDE 228
             S D D ++
Sbjct: 279 SDSNDGDSED 288


>At1g32590 hypothetical protein, 5' partial
          Length = 1263

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 58/248 (23%), Positives = 114/248 (45%), Gaps = 46/248 (18%)

Query: 48  HKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIME 107
           HK +  L ++I     + I  +E +K +++S+K  ++GN +V+ ++   L + +E   M+
Sbjct: 26  HKVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLEMK 85

Query: 108 PNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMS 167
             E+I   FSR   +   +R L +       V +I+R L E +  +V +IE + +++ ++
Sbjct: 86  IGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKELT 145

Query: 168 LEELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDED 227
           ++ L S L  HE      Q+L +  +            + + L+AE +            
Sbjct: 146 VDGLQSSLMVHE------QNLSRHDV------------EERVLKAETQ------------ 175

Query: 228 ELTLISKRLNRIWKHRQSKFKGS----GRAKGKYESSGQKKSSIKEVTCFECKESGHYKS 283
                       W+    + +G     GR +G Y+  G+   +   V CF+C + GHYK+
Sbjct: 176 ------------WRPDGGRGRGGSPSRGRGRGGYQGRGRGYVNRDTVECFKCHKMGHYKA 223

Query: 284 DCPKLKKD 291
           +CP  +K+
Sbjct: 224 ECPSWEKE 231


>At3g60170 putative protein
          Length = 1339

 Score = 78.6 bits (192), Expect = 3e-14
 Identities = 66/308 (21%), Positives = 133/308 (42%), Gaps = 45/308 (14%)

Query: 11  DLWDIIVDGYERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDRE 70
           +LW ++ +G    V              ++ KL  +  K +  L  AI  E  + I D+ 
Sbjct: 34  ELWRLVEEGIPAIVVGTTPVSEAQRSAVEEAKL--KDLKVKNFLFQAIDREILETILDKS 91

Query: 71  FAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLN 130
            +K I++S+K  ++G+ KVK ++  +L +++E   M+  E I+    R   +V  ++   
Sbjct: 92  TSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLAMKEGEKIDTFLGRTLTVVNKMKTNG 151

Query: 131 KSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKK 190
           +       V +I+R L   +  +V SIE + D+  +S++EL   L  HE + +       
Sbjct: 152 EVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLSTLSIDELHGSLLVHEQRLN------- 204

Query: 191 KSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKGS 250
                        V++ +AL+   EE                           +  F+GS
Sbjct: 205 -----------GHVQEEQALKVTHEERPSQGRG--------------------RGVFRGS 233

Query: 251 -GRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKKPKKHFKTKKSLMVTFD 309
            GR +G+    G+  ++   V C++C   GH++ +CP+ +K+    +  + ++ L++ + 
Sbjct: 234 RGRGRGR----GRSGTNRAIVECYKCHNLGHFQYECPEWEKNANYAELEEEEELLLMAYV 289

Query: 310 ESESEDVD 317
           E    + D
Sbjct: 290 EQNQANRD 297


>At2g15650 putative retroelement pol polyprotein
          Length = 1347

 Score = 77.8 bits (190), Expect = 5e-14
 Identities = 69/317 (21%), Positives = 139/317 (43%), Gaps = 51/317 (16%)

Query: 12  LWDIIVDGY--------ERPVDTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEY 63
           LW ++ +G         E P     K +    +T D   L         IL +A++ + +
Sbjct: 33  LWSVVEEGVPVEPVQAEETPETARAKTLREEAVTNDTMALQ--------ILQTAVTDQIF 84

Query: 64  QKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLV 123
            +I     +K  +D LK  ++G+ +V+  K  SL ++YE+  M  N++I+    +  +L 
Sbjct: 85  SRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYENLKMYDNDNIKTFTDKLIVLE 144

Query: 124 AGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELK-R 182
             +    +  T    + +I+  LP  +  +V+ +E TRD++ +++ EL+ ILK  E +  
Sbjct: 145 IQLTYHGEKKTNTQLIQKILISLPAKFDSIVSVLEQTRDLDALTMSELLGILKAQEARVT 204

Query: 183 SEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKH 242
           +  +  K+ +  ++SK  ++  ++        ++ +                  ++  KH
Sbjct: 205 AREESTKEGAFYVRSKGRESGFKQDNTNNRVNQDKKWCG--------------FHKSSKH 250

Query: 243 RQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKKPKKHFKTKK 302
            + +     R K K +  G+ K S   + C++C + GHY ++C             K K+
Sbjct: 251 TEEEC----REKPKNDDHGKNKRS--NIKCYKCGKIGHYANEC-----------RSKNKE 293

Query: 303 SLMVTFDESESEDVDSD 319
              VT +E   EDV+ D
Sbjct: 294 RAHVTLEE---EDVNED 307


>At4g04560 putative transposon protein
          Length = 590

 Score = 72.8 bits (177), Expect = 2e-12
 Identities = 37/181 (20%), Positives = 93/181 (50%), Gaps = 4/181 (2%)

Query: 9   DADLWDIIVDGYERPVDTDGKKI----PRSEMTADQKKLYSQHHKARAILLSAISYEEYQ 64
           D D W  + DG+  P   D K+      R+E  AD+K   + + +A +++  ++   ++ 
Sbjct: 368 DMDAWFAVEDGWMPPTTKDAKRDIVSKSRTEWIADEKTAANHNSQALSVIFGSLLRNKFT 427

Query: 65  KITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVA 124
           ++     AK +++ L++S E    VK ++   L  ++E+  ME  ES+++   +   +  
Sbjct: 428 QVQGCLSAKEVWEILQVSFECTNNVKRTRLDMLASEFENLTMEAEESVDDFNGKLSSITQ 487

Query: 125 GIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSE 184
               L K+Y  K  V + +R LP+ +    ++I+++ + + +  ++++ +++ ++  + E
Sbjct: 488 EAVVLGKTYKDKKMVKKFLRSLPDKFQSHKSAIDVSLNSDQLKFDQVVGMMQAYDTDKEE 547

Query: 185 M 185
           +
Sbjct: 548 I 548


>At1g36110 hypothetical protein
          Length = 745

 Score = 71.2 bits (173), Expect = 4e-12
 Identities = 52/238 (21%), Positives = 99/238 (40%), Gaps = 36/238 (15%)

Query: 50  ARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPN 109
           AR ++  +I      ++     AK ++DS+K  + G  +VKE++  +L+ ++E   M+ +
Sbjct: 60  ARGLIFQSIPESLTLQVGTLATAKLVWDSIKTRYVGADRVKEARLQTLMAEFEKMKMKES 119

Query: 110 ESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLP-ESWMPLVTSIELTRDVENMSL 168
           E I+    R   L      L  +  T   V + +  LP   ++ ++ S+E   D+ N S 
Sbjct: 120 EKIDVFAGRLAELATRSDALGSNIETSKLVKKFLNALPLRKYIHIIASLEQVLDLNNTSF 179

Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDE 228
           E+++  +K +E                            +    EE+E        D+ +
Sbjct: 180 EDIVGRIKVYE---------------------------ERVWDGEEQED-------DQGK 205

Query: 229 LTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCP 286
           L   +      W   + + +G G   G+    G+      +VTC+ C + GHY S+CP
Sbjct: 206 LMYANTDTQDSWYASRGRGQGGG-FNGRGRGRGRGSRDTSKVTCYRCDKLGHYASNCP 262


>At2g05390 putative retroelement pol polyprotein
          Length = 1307

 Score = 70.5 bits (171), Expect = 8e-12
 Identities = 70/375 (18%), Positives = 158/375 (41%), Gaps = 67/375 (17%)

Query: 50  ARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPN 109
           ARA+L  ++      ++   + +K +++++K  + G ++VKE+K  +L+ +++   M+ N
Sbjct: 27  ARALLFQSVPESTILQVGKHKTSKAMWEAIKTRNLGAERVKEAKLQTLMAEFDRLNMKDN 86

Query: 110 ESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLP-ESWMPLVTSIELTRDVENMSL 168
           E+I+E   R   +      L +       V + ++ LP + ++ ++ ++E   D+     
Sbjct: 87  ETIDEFVGRISEISTKSESLGEEIEESKIVKKFLKSLPRKKYIHIIAALEQILDLNTTGF 146

Query: 169 EELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDE 228
           E+++  +K +E +  +  D              +  E+ K + A  E S +         
Sbjct: 147 EDIVGRMKTYEDRVCDEDD--------------SPEEQGKLMYANSESSYDTRGG----- 187

Query: 229 LTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
                          + + + SGR +G Y   G ++    +V C+ C ++GHY S+C   
Sbjct: 188 -------------RGRGRGRSSGRGRGGY---GYQQRDKSKVICYRCDKTGHYASEC--- 228

Query: 289 KKDKKPKKHFKTKKSLMVTFDESESEDVDSDGEVQGLM----AIVKDKGAESKEAVDSDS 344
                        + L +   + + ++ + D E++ LM      + ++  + KE  ++ S
Sbjct: 229 -----------LDRLLKLIKAQEQQQNNEDDDEIESLMMHEVVYLNERSVKPKE-FEACS 276

Query: 345 ESEGDPNSDDENEVFASFS-TSELKHALS-----------DIMDKYNSLLSTHKKLKKNL 392
           ++    ++   N +  +    S+L   ++           DI  K + +L T   ++K L
Sbjct: 277 DNSWYLDNGASNHMTGNLQWFSKLNEMITGKVRFGDDSRIDIKGKGSIVLITKGGIRKTL 336

Query: 393 SAVSKTPSEHEKIIS 407
           + V   P     IIS
Sbjct: 337 TDVYFIPDLKSNIIS 351


>At3g21010 unknown protein
          Length = 438

 Score = 68.2 bits (165), Expect = 4e-11
 Identities = 67/282 (23%), Positives = 119/282 (41%), Gaps = 47/282 (16%)

Query: 12  LWDIIVDGYERPVDTDGKKIP------RSEMTADQKKLYSQHHKARAILLSAISYEEYQK 65
           LWD++ +G    V  D  K+P      ++E  +  + L  +  KA  IL S+++   ++K
Sbjct: 33  LWDVVENG----VPPDPSKVPELAATIQAEEFSKWRDLAEKDMKALQILQSSLTDSAFRK 88

Query: 66  ITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAG 125
                 AK ++DSL+   +GN +  ++K   L +++E   M   E I     R   +V  
Sbjct: 89  TLSASSAKDLWDSLE---KGNNE--QAKLRRLEKQFEELSMNEGEPINPYIDRVIEIVEQ 143

Query: 126 IRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEM 185
           +R    + +    + +++  L  S+  +   +    D++NMSL+  + +   ++    E 
Sbjct: 144 LRRFKIAKSDYQVIEKVLATLSGSYDDVAPVLGDLVDLKNMSLKSFVELFYVYDSITEES 203

Query: 186 QDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQS 245
             L  K+  L+S +E                         E+   L +K       H+Q 
Sbjct: 204 IHLMLKANRLRSMAE-------------------------EESCVLCNKN-----NHKQE 233

Query: 246 KFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPK 287
               S    GK  SSG ++S  K+  CF+C E GH   DC K
Sbjct: 234 DCSSSIPKAGK--SSGARQSKPKKGKCFQCGERGHKAKDCNK 273


>At2g07550 putative retroelement pol polyprotein
          Length = 1356

 Score = 60.8 bits (146), Expect = 6e-09
 Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 60/265 (22%)

Query: 29  KKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDREFAKGIF---DSLKMSHEG 85
           +K+ + E   ++KK      KAR+ ++ +++    +KI     A  +    D L MS   
Sbjct: 59  EKLEKFEALEEKKK------KARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKAL 112

Query: 86  NKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRC 145
             ++         QK  SF M  N S+E     F  ++  +  +N   + +D  I ++  
Sbjct: 113 PNRIYPK------QKLYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTA 166

Query: 146 LPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVE 205
           LP+++  L  +++ +     ++L+E+ + +   EL                   E   V+
Sbjct: 167 LPKAFDQLKDTLKYSSGKSILTLDEVAAAIYSKEL-------------------ELGSVK 207

Query: 206 KSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKS 265
           KS  +QAE    ++ +E+                        KG G  KGK    G+K  
Sbjct: 208 KSIKVQAEGLYVKDKNEN------------------------KGKGEQKGK--GKGKKGK 241

Query: 266 SIKEVTCFECKESGHYKSDCPKLKK 290
           S K+  C+ C E GH++S CP   K
Sbjct: 242 SKKKPGCWTCGEEGHFRSSCPNQNK 266


>At3g31380 hypothetical protein
          Length = 262

 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 33/131 (25%), Positives = 69/131 (52%), Gaps = 1/131 (0%)

Query: 50  ARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPN 109
           AR +L+ +I      ++ + + AK ++DS+K  H G ++VKE++  +L+  +E   M+  
Sbjct: 2   ARGLLVQSIPEAFTLQVGNLQTAKEVWDSIKTRHVGAERVKEARVQTLMADFEKMKMKEA 61

Query: 110 ESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLP-ESWMPLVTSIELTRDVENMSL 168
           E I++   R   L     PL  +      V + +  LP + ++ ++ S+E   D+ N + 
Sbjct: 62  EKIDDFAGRLSELSTKSAPLGVNIEVPKLVKKFLNSLPRKKYIHIIASLEQVLDLNNTTF 121

Query: 169 EELISILKCHE 179
           E+++  +K +E
Sbjct: 122 EDIVGCMKVNE 132


>At3g28770 hypothetical protein
          Length = 2081

 Score = 57.8 bits (138), Expect = 5e-08
 Identities = 69/289 (23%), Positives = 126/289 (42%), Gaps = 26/289 (8%)

Query: 189  KKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFK 248
            KKK  +  S  +K + +K + +  E ++ E+  +++ + E + + +      + ++S+  
Sbjct: 946  KKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDS 1005

Query: 249  GS-GRAKGKYESSGQKKSSIKEVTCFECKESGHYK-----SDCPKLKKDKKPKKHFKTKK 302
             S  R K +YE   +KKS  KE    E K+S   K     S+  K KK+K+  +  K KK
Sbjct: 1006 ASKNREKKEYE---EKKSKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKK 1062

Query: 303  SLMVTFDESESEDVDSDGEVQGLMAIVKDKGAESKEAVDSDS-ESEGDPNSDDENEVFAS 361
                T ++ ESE+  S             K  + KE  D+ S + E D     ++E   S
Sbjct: 1063 KEEETKEKKESENHKS------------KKKEDKKEHEDNKSMKKEEDKKEKKKHEESKS 1110

Query: 362  FSTSELKHALSDIMDKYNSLLSTHKKLKK---NLSAVSKTPSEHEKIISDLKNENHALVN 418
                E K  +  + D+ ++     K  KK   ++  V K   + EK  ++ K+E   + +
Sbjct: 1111 RKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIES 1170

Query: 419  SNSVLKNQIAKLEEIVACDASDCRNESKYEKSFQRFLAKSVDRSLMASM 467
            S S  KN++ K E+  + D    + +   E   ++      DR    S+
Sbjct: 1171 SKS-QKNEVDKKEKKSSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSV 1218



 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 55/269 (20%), Positives = 105/269 (38%), Gaps = 21/269 (7%)

Query: 176  KCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKR 235
            K  + KR E    ++KS   K +S   K +K +    E++ESE       ED+       
Sbjct: 1032 KSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKK---EHE 1088

Query: 236  LNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKKPK 295
             N+  K  + K     + K +   S +K+   K++   E + S   K D    K +KK  
Sbjct: 1089 DNKSMKKEEDK---KEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKED----KNEKKKS 1141

Query: 296  KHFKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKGAESKEAVDSDSESEGDPNSDDE 355
            +H K  K      ++ E+E+     E++          ++  E    + +S  D     E
Sbjct: 1142 QHVKLVKKESDKKEKKENEEKSETKEIE-------SSKSQKNEVDKKEKKSSKDQQKKKE 1194

Query: 356  NEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENHA 415
             E+  S    E K   ++   K  + +  +KK K+     +K   + +        +  +
Sbjct: 1195 KEMKES---EEKKLKKNEEDRKKQTSVEENKKQKETKKEKNKPKDDKKNTTKQSGGKKES 1251

Query: 416  LVNSNSVLKNQIAKLEEIVACDASDCRNE 444
            + + +   +NQ  K +     D+ + +NE
Sbjct: 1252 MESESKEAENQ-QKSQATTQADSDESKNE 1279



 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 63/310 (20%), Positives = 122/310 (39%), Gaps = 45/310 (14%)

Query: 176  KCHELKRS--EMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLIS 233
            K HE  +S  + +D K+K    +SKS K + +K    + E++ S +  ED +E +    S
Sbjct: 1085 KEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKK---S 1141

Query: 234  KRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHY---------KSD 284
            + +  + K    K K     K + +     KS   EV   E K S            +S+
Sbjct: 1142 QHVKLVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESE 1201

Query: 285  CPKLKKDKKP----------KKHFKTKKSLMVTFDESESEDVDSDGEVQGL--------- 325
              KLKK+++           KK  +TKK      D+ ++    S G+ + +         
Sbjct: 1202 EKKLKKNEEDRKKQTSVEENKKQKETKKEKNKPKDDKKNTTKQSGGKKESMESESKEAEN 1261

Query: 326  ----MAIVKDKGAESKEAVDSDSESEGDPNSDDE-------NEVFASFSTSELKHALSDI 374
                 A  +    ESK  +   ++S+ D +SD +       NE+     +       ++ 
Sbjct: 1262 QQKSQATTQADSDESKNEILMQADSQADSHSDSQADSDESKNEILMQADSQATTQRNNEE 1321

Query: 375  MDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENHALVNSNSVLKNQIAKLEEIV 434
              K  + ++ +KK K+     +K   + +        +  ++ + +   +NQ  K +   
Sbjct: 1322 DRKKQTSVAENKKQKETKEEKNKPKDDKKNTTKQSGGKKESMESESKEAENQ-QKSQATT 1380

Query: 435  ACDASDCRNE 444
              D+ + +NE
Sbjct: 1381 QADSDESKNE 1390



 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 61/289 (21%), Positives = 114/289 (39%), Gaps = 26/289 (8%)

Query: 179  ELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNR 238
            E K    ++ KK+    + K  + K  + +  + E+EES +      E+E     +  N 
Sbjct: 1017 EKKSKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENH 1076

Query: 239  IWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKKPKKHF 298
              K ++ K       K   ++   KK   K+      ++  H +S   K ++DKK  +  
Sbjct: 1077 KSKKKEDK-------KEHEDNKSMKKEEDKK------EKKKHEESKSRKKEEDKKDMEKL 1123

Query: 299  KTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKGAESKEAVDSDSES-EGDPNSDDENE 357
            + + S        + ED +   + Q +  + K+   + K+  +  SE+ E + +   +NE
Sbjct: 1124 EDQNS------NKKKEDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQKNE 1177

Query: 358  VFASFSTSELKHALSDIMDKYNSLL-STHKKLKKNLSAVSK-TPSEHEKIISDLKNENHA 415
            V       E K +      K   +  S  KKLKKN     K T  E  K   + K E + 
Sbjct: 1178 V----DKKEKKSSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKETKKEKNK 1233

Query: 416  LVNSNSVLKNQIAKLEEIVACDASDCRNESKYEKSFQRFLAKSVDRSLM 464
              +       Q    +E +  ++ +  N+ K + + Q    +S +  LM
Sbjct: 1234 PKDDKKNTTKQSGGKKESMESESKEAENQQKSQATTQADSDESKNEILM 1282



 Score = 42.0 bits (97), Expect = 0.003
 Identities = 57/288 (19%), Positives = 119/288 (40%), Gaps = 28/288 (9%)

Query: 176  KCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASE--DSDEDELTLIS 233
            K  E K+ + +    K    K    K +  +S++ +AE ++  +A+   DSDE +  ++ 
Sbjct: 1223 KQKETKKEKNKPKDDKKNTTKQSGGKKESMESESKEAENQQKSQATTQADSDESKNEILM 1282

Query: 234  KRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSI---------KEVTCFECKESGHYKSD 284
            +  ++   H  S+   S  +K +       +++          K+ +  E K+    K +
Sbjct: 1283 QADSQADSHSDSQ-ADSDESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEE 1341

Query: 285  CPKLKKDKK-PKKHFKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKGAESKEAV--- 340
              K K DKK   K    KK  M    ESES++ ++  + Q       D   ESK  +   
Sbjct: 1342 KNKPKDDKKNTTKQSGGKKESM----ESESKEAENQQKSQATTQADSD---ESKNEILMQ 1394

Query: 341  ---DSDSESEGDPNSDD-ENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVS 396
                +DS S+   +SD+ +NE+     +       ++   K  + ++ +KK K+     +
Sbjct: 1395 ADSQADSHSDSQADSDESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETKEEKN 1454

Query: 397  KTPSEHEKIISDLKNENHALVNSNSVLKNQIAKLEEIVACDASDCRNE 444
            K   + +        +  ++ + +   +NQ  K +     ++ + +NE
Sbjct: 1455 KPKDDKKNTTEQSGGKKESMESESKEAENQ-QKSQATTQGESDESKNE 1501



 Score = 40.4 bits (93), Expect = 0.008
 Identities = 52/228 (22%), Positives = 94/228 (40%), Gaps = 19/228 (8%)

Query: 190 KKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKG 249
           KK+     K E+ K     +++ ++ E++E+  DS +D+     +   +I+   +SK   
Sbjct: 686 KKNDGSSEKGEEGKENNKDSMEDKKLENKESQTDSKDDKSVDDKQEEAQIYGG-ESKDDK 744

Query: 250 SGRAKGKYESSGQKKSSIKEVTCFECKESGHY--KSDCPKL----KKDKKPKKHFKTKKS 303
           S  AKGK + S + K +         KE      K +  K+    KK+ K  K  +TK +
Sbjct: 745 SVEAKGKKKESKENKKTKTNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDN 804

Query: 304 LMVTFDESESEDVDSDGEVQGLMAIVKDKGAESKEAVDSDSESEGDPNSDDENEVFASFS 363
             ++  E+  E  +  GE        K+   ESK+    +++ + +    D N V     
Sbjct: 805 KKLSSTENRDEAKERSGEDN------KEDKEESKDYQSVEAKEKNENGGVDTN-VGNKED 857

Query: 364 TSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKN 411
           + +LK   S +  K N      + +KK    V +      K + D  N
Sbjct: 858 SKDLKDDRS-VEVKANK----EESMKKKREEVQRNDKSSTKEVRDFAN 900



 Score = 37.7 bits (86), Expect = 0.054
 Identities = 67/335 (20%), Positives = 138/335 (41%), Gaps = 33/335 (9%)

Query: 154 VTSIELTRDVENM--SLEE--LISILKCHELKRSEMQDLKKKSIALKSKSEKAK----VE 205
           V++I+  ++VE    S+E+  +   L+  E  +SE++  K    ++  K E+A+    V 
Sbjct: 326 VSTIDNEKEVEGQGESIEDSDIEKNLESKEDVKSEVEAAKNAGSSMTGKLEEAQRNNGVS 385

Query: 206 KSKALQAEEEESEEASED-------SDEDELTLISKRLNRIWKHRQS--KFKGSG-RAKG 255
            ++ + +E + S E++ D       +DED      K+ N+   H  +    KG     K 
Sbjct: 386 TNETMNSENKGSGESTNDKMVNATTNDEDH-----KKENKEETHENNGESVKGENLENKA 440

Query: 256 KYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKKPKKHFKTKKSLMVTFDESESED 315
             E S + ++   +V   E K +   ++        ++ ++  +    + +  + ++ E+
Sbjct: 441 GNEESMKGENLENKVGNEELKGNASVEAKTNNESSKEEKREESQRSNEVYMNKETTKGEN 500

Query: 316 VDSDGEVQGLMAIVKDKGAESKEAVDSDSESEGDPNSDDENEVFASFSTSELKHALSDIM 375
           V+  GE  G     KD   E+KE    D + + D N  D N        +++ + +S   
Sbjct: 501 VNIQGESIG--DSTKDNSLENKE----DVKPKVDANESDGNSTKERHQEAQVNNGVSTED 554

Query: 376 DKYNSLLSTHKKLKKNLSAVSKTPSEH--EKIISDLKNENHALVNSNSVLKNQIAKLEEI 433
              +++ +  +K       V+    +H  EK      N   ++ N N   K    +L++ 
Sbjct: 555 KNLDNIGADEQKKNDKSVEVTTNDGDHTKEKREETQGNNGESVKNENLENKEDKKELKDD 614

Query: 434 VACDASDCRNESKYEKSFQRFLAKSVDRSLMASMI 468
            +  A      S  EK  Q    K  D S+ + ++
Sbjct: 615 ESVGAKTNNETSLEEKREQ--TQKGHDNSINSKIV 647



 Score = 32.7 bits (73), Expect = 1.7
 Identities = 42/165 (25%), Positives = 68/165 (40%), Gaps = 17/165 (10%)

Query: 197 SKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKGSGRAKGK 256
           +KSE  +V+K+     + EE +E ++DS ED      K+L    K  Q+  K       K
Sbjct: 679 TKSE-VEVKKNDGSSEKGEEGKENNKDSMED------KKLEN--KESQTDSKDDKSVDDK 729

Query: 257 YESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKKPKKHFKTKKSLMVTFDESESEDV 316
            E +       K+    E K     K +  + KK K  +   + K+   V  ++ ESE V
Sbjct: 730 QEEAQIYGGESKDDKSVEAKGK---KKESKENKKTKTNENRVRNKEE-NVQGNKKESEKV 785

Query: 317 DSDGEVQGLMA----IVKDKGAESKEAVDSDSESEGDPNSDDENE 357
           +   + +   A       +K   S E  D   E  G+ N +D+ E
Sbjct: 786 EKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEE 830



 Score = 32.3 bits (72), Expect = 2.3
 Identities = 85/389 (21%), Positives = 143/389 (35%), Gaps = 50/389 (12%)

Query: 175  LKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSD--------E 226
            +K  E    E+     K+I +K + E++K  K+     +E  +EE S+DS+        E
Sbjct: 1588 VKGKEDNGDEVGKENSKTIEVKGRHEESKDGKTNENGGKEVSTEEGSKDSNIVERNGGKE 1647

Query: 227  DELTLISKRLNRIWKHRQSKFK-GSGRAKGKYESSGQ-KKSSIKEVTCFECKESGHYKSD 284
            D +   S+    +  +   +     G   GK E   + K++S KE +  +  E G     
Sbjct: 1648 DSIKEGSEDGKTVEINGGEELSTEEGSKDGKIEEGKEGKENSTKEGSKDDKIEEG----- 1702

Query: 285  CPKLKKDKKPKKHFKTKKSLMVTFD-ESESEDVDSDGEVQGLMAIVKDKGAESKEAVDSD 343
                 K+   K+  K  K   +  D E+  E+   DG         KD  +     V  D
Sbjct: 1703 --MEGKENSTKESSKDGKINEIHGDKEATMEEGSKDGGTNSTGKDSKDSKSVEINGVKDD 1760

Query: 344  SESEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSL------------LSTHKKLKKN 391
            S  + D  + D NE+  +     +K  +++I    NSL            L T+K   KN
Sbjct: 1761 SLKD-DSKNGDINEI-NNGKEDSVKDNVTEIQGNDNSLTNSTSSEPNGDKLDTNKDSMKN 1818

Query: 392  L-----------SAVSKTPSEHEKIISDLKNENHALVNSN-SVLKNQIAKLEEIVACDAS 439
                        S   +T    E  +S + N+N   V SN + + NQ     + +    +
Sbjct: 1819 NTMEAQGGSNGDSTNGETEETKESNVS-MNNQNMQDVGSNENSMNNQTTGTGDDIISTTT 1877

Query: 440  DCRNESKYEKSFQRFLAKSVDRSLMASMIYGVSRNGMHGIGYSKPIRNEPSVSKAKSLYE 499
            D   ES   K    F++   ++S          +     + Y  P+ +      ++S   
Sbjct: 1878 D--TESNTSKEVTSFISNLEEKSPGTQEFQSFFQKLKDYMKYLCPVSSTFEAKDSRSYMS 1935

Query: 500  CFVPSGTILPDPVPAKIAKNPLKKGSFSM 528
              +   T L D +    AK   K GS  M
Sbjct: 1936 EMISMATKLSDAMAVLQAK---KSGSGQM 1961



 Score = 31.2 bits (69), Expect = 5.1
 Identities = 50/205 (24%), Positives = 82/205 (39%), Gaps = 38/205 (18%)

Query: 182 RSEMQDLKKKSIALKSKSEKAKVEK------SKALQAEEEESEEASEDSDEDELTLISKR 235
           R EM ++ K    L +   +  +EK      + +L  E++ + E S    E  +T I K 
Sbjct: 120 RKEMFEVMKSLTELHAAIGRVIIEKHIKGDEAMSLSLEQKNAVETSITQWEQTITRIVKI 179

Query: 236 LNRIWKHRQSKFKGSGRAKGKYESSGQKKS----SIKEVTCFECKESGHYKSD------- 284
           +  +      K K S  A  +  SS +  +    S    T  E  ES   K D       
Sbjct: 180 VVEV------KSKSSSEASSEESSSTEHNNVTTGSNMVETNGENSESTQEKGDGVEGSNG 233

Query: 285 ------------CPKLKKDKKPKKHFKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDK 332
                          LK+     ++ +TK++     + +  ++V+  GE  G  AI  +K
Sbjct: 234 GDVSMENLQGNKVEDLKEGNNVVENGETKENNGENVESNNEKEVEGQGESIGDSAI--EK 291

Query: 333 GAESKEAVDSDSE-SEGDPNSDDEN 356
             ESKE V S+ E ++ D +S  EN
Sbjct: 292 NLESKEDVKSEVEAAKNDGSSMTEN 316


>At4g10460 putative retrotransposon
          Length = 1230

 Score = 57.0 bits (136), Expect = 9e-08
 Identities = 67/295 (22%), Positives = 122/295 (40%), Gaps = 58/295 (19%)

Query: 25  DTDGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHE 84
           + +GK+   SE    +  +  +  KAR+ ++ ++S +  +K    + A  + ++L     
Sbjct: 50  EEEGKE---SEKGDKEALMEEKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALD---- 102

Query: 85  GNKKVKESKALS----LIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVI 140
              K+  SKAL     L QK  S+ M+ N S+E     F  L+A +   N   + +D  I
Sbjct: 103 ---KLYMSKALPNRIYLKQKLYSYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAI 159

Query: 141 RIIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKKKSIALKSKSE 200
            ++  LP+ +  L  +++       +S++E+++ +   EL+        KKSI  + ++E
Sbjct: 160 LLLMSLPKQFDQLKDTLKYGSGRTTLSVDEVVAAIYSKELELGS----NKKSI--RGQAE 213

Query: 201 KAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKGSGRAKGKYESS 260
              V+     +   E+ E+ +                          KG  R++ K    
Sbjct: 214 GLYVKDKPETRGMSEQKEKGN--------------------------KGRSRSRSK---- 243

Query: 261 GQKKSSIKEVTCFECKESGHYKSDCP-KLKKDKKPKKHFKTKKSLMVTFDESESE 314
           G K        C+ C E GH+K+ CP K K+  K K      K    T   + SE
Sbjct: 244 GWK-------GCWICGEEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSE 291


>At3g55300 putative protein
          Length = 262

 Score = 55.5 bits (132), Expect = 3e-07
 Identities = 53/209 (25%), Positives = 90/209 (42%), Gaps = 38/209 (18%)

Query: 83  HEGNKKVKE-SKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIR 141
           +EGN + K  +  + L  K+ SF M  N+SIEE       LVA +  L+ + + +D  ++
Sbjct: 36  YEGNYQTKTLANMIYLKHKFTSFKMVENKSIEENLDTSLKLVADLASLDINTSDEDQALQ 95

Query: 142 IIRCLPESWMPLVTSIELTRDVENMSLEELISILKCHELKRSEMQDLKKKSIALKSKSEK 201
            +  LP  +  LV +++     + ++L  +IS     E+      +LK+K +   SK + 
Sbjct: 96  FMAGLPPQYDSLVDTLKYGSGKDTLTLNAVISSAYSKEI------ELKEKGLLNVSKPD- 148

Query: 202 AKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKGSGRAKGKYESSG 261
                S+AL  +                     R N   K  +    GS    GK++S  
Sbjct: 149 -----SEALLGD------------------FKGRSNN--KGNKRPCTGSSSGNGKFQSRP 183

Query: 262 QKKSSIKEVTCFECKESGHYKSDCPKLKK 290
              +S     CF C +  H+K +CP+ KK
Sbjct: 184 SNNTS-----CFICGKEDHWKRECPQRKK 207


>At3g25450 hypothetical protein
          Length = 1343

 Score = 53.9 bits (128), Expect = 7e-07
 Identities = 37/181 (20%), Positives = 94/181 (51%), Gaps = 8/181 (4%)

Query: 37  TADQKKLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALS 96
           +AD++K    +  ARA+L  +I      ++  ++ +  +++++K  + G ++VKE++  +
Sbjct: 54  SADEEK----NDMARALLFQSIPESLILQVGKQKTSSAVWEAIKSRNLGAERVKEARLQT 109

Query: 97  LIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLP-ESWMPLVT 155
           L+ +++   M+ +E+I++   R   +      L +       V + ++ LP + ++ +V 
Sbjct: 110 LMAEFDKLKMKDSETIDDYVGRISEITTKAAALGEDIEESKIVKKFLKSLPRKKYIHIVA 169

Query: 156 SIELTRDVENMSLEELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEE 215
           ++E   D++  + E++   +K +E +  +  D  +    L ++ E+  V+    L+ EEE
Sbjct: 170 ALEQVLDLKTTTFEDIAGRIKTYEDRVWDDDDSHEDQGKLMTEVEEEVVDD---LEEEEE 226

Query: 216 E 216
           E
Sbjct: 227 E 227


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.355    0.156    0.545 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,663,341
Number of Sequences: 26719
Number of extensions: 1152545
Number of successful extensions: 14509
Number of sequences better than 10.0: 392
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 327
Number of HSP's that attempted gapping in prelim test: 12461
Number of HSP's gapped (non-prelim): 1470
length of query: 1602
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1489
effective length of database: 8,299,349
effective search space: 12357730661
effective search space used: 12357730661
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 67 (30.4 bits)