BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0282.7
         (463 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g54080 homogentisate 1,2-dioxygenase                               761  0.0
At2g24790 CONSTANS-like B-box zinc finger protein                      31  1.3
At5g40780 amino acid permease                                          30  2.2
At5g14160 putative protein                                             30  2.8

>At5g54080 homogentisate 1,2-dioxygenase
          Length = 461

 Score =  761 bits (1965), Expect = 0.0
 Identities = 351/433 (81%), Positives = 384/433 (88%)

Query: 8   DDFNYLSGFGNHFSSEALAGALPEAQNSPLICPYGLYAEQISGTSFTSPRNLNLFSWFYR 67
           ++  Y SGFGNHFSSEA+AGALP  QNSPL+CPYGLYAEQISGTSFTSPR LN  SW YR
Sbjct: 9   EELKYQSGFGNHFSSEAIAGALPLDQNSPLLCPYGLYAEQISGTSFTSPRKLNQRSWLYR 68

Query: 68  VKPSVTHEPFKPRVPCNGRILSEFNHSNSSTNPTQLRWKPMDSPDSPTDFIDGLSTVCGS 127
           VKPSVTHEPFKPRVP + +++SEF+ SNS TNPTQLRW+P D PDS  DF+DGL T+CG+
Sbjct: 69  VKPSVTHEPFKPRVPAHKKLVSEFDASNSRTNPTQLRWRPEDIPDSEIDFVDGLFTICGA 128

Query: 128 GSSFMRHGYAIHMYTANKSMNNCAFCNADGDFLIVPQQGRLFITTECGRLKVSPGEIAML 187
           GSSF+RHG+AIHMY AN  M + AFCNADGDFL+VPQ GRL+I TECGRL V+PGEIA++
Sbjct: 129 GSSFLRHGFAIHMYVANTGMKDSAFCNADGDFLLVPQTGRLWIETECGRLLVTPGEIAVI 188

Query: 188 PQGFRFTVDLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEDKSYPG 247
           PQGFRF++DLPDG SRGYVAEI+G HFQLPDLGPIGANGLAA RDFL PTAWFED   P 
Sbjct: 189 PQGFRFSIDLPDGKSRGYVAEIYGAHFQLPDLGPIGANGLAASRDFLAPTAWFEDGLRPE 248

Query: 248 YTIVQKFGGELFSAVQDFSPFNVVAWRGNYVPYKYDLSKFCPYNTVLFDHSDPSINTVLT 307
           YTIVQKFGGELF+A QDFSPFNVVAW GNYVPYKYDL KFCPYNTVL DH DPSINTVLT
Sbjct: 249 YTIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLKKFCPYNTVLLDHGDPSINTVLT 308

Query: 308 APTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEAKVDGFLPGGA 367
           APTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLI+G YEAK DGFLPGGA
Sbjct: 309 APTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGAYEAKADGFLPGGA 368

Query: 368 SLHSCMTPHGPDTKSYEATIARGNDVGPNKITDTMAFMFESCLIPRISRWALESPFLDHD 427
           SLHSCMTPHGPDT +YEATIAR N + P+K+T TMAFMFES LIPR+  WALESPFLDHD
Sbjct: 369 SLHSCMTPHGPDTTTYEATIARVNAMAPSKLTGTMAFMFESALIPRVCHWALESPFLDHD 428

Query: 428 YYQCWIGLRSHFN 440
           YYQCWIGL+SHF+
Sbjct: 429 YYQCWIGLKSHFS 441


>At2g24790 CONSTANS-like B-box zinc finger protein
          Length = 294

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 11/77 (14%)

Query: 154 NADGDFLIVPQQGRLFITTECGRLKVSPGEIAMLPQGFRF--------TVDLPDGP-SRG 204
           N+ G+  +VP Q +LF+  +     +S  +I+   QGF F        T+D+P  P S G
Sbjct: 152 NSSGNDGVVPVQNKLFLNEDYFNFDLSASKISQ--QGFNFINQTVSTRTIDVPLVPESGG 209

Query: 205 YVAEIFGTHFQLPDLGP 221
             AE+  T      L P
Sbjct: 210 VTAEMTNTETPAVQLSP 226


>At5g40780 amino acid permease
          Length = 446

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 231 RDFLVPTAWFEDKSYPGYT-IVQKFGGELFSAVQDFSPFNVVAWRGNYVPYKYDLSKFCP 289
           R+F V    F   ++P +  ++  FGG  F+    F P   V W   Y P KY LS +  
Sbjct: 356 RNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLP--CVIWLAIYKPKKYSLSWWAN 413

Query: 290 YNTVLF 295
           +  ++F
Sbjct: 414 WVCIVF 419


>At5g14160 putative protein
          Length = 352

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 279 PYKYDLSKFCPYNTVLFDHSDPSINTVLTAPTD 311
           P+++ L  F PY+T+  D+ D   N V+T   D
Sbjct: 214 PFRFRLGSFSPYDTIWTDYLDWKTNIVITISGD 246


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,073,204
Number of Sequences: 26719
Number of extensions: 561375
Number of successful extensions: 994
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 5
length of query: 463
length of database: 11,318,596
effective HSP length: 103
effective length of query: 360
effective length of database: 8,566,539
effective search space: 3083954040
effective search space used: 3083954040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)