BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0282.6
(303 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18790 unknown protein 491 e-139
At1g76810 translation initiation factor IF-2 like protein 40 0.001
At1g20290 hypothetical protein 39 0.003
At2g18540 putative vicilin storage protein (globulin-like) 39 0.003
At1g20920 putative RNA helicase 39 0.003
At4g31570 putative protein 38 0.008
At5g44610 unknown protein 37 0.010
At5g27330 glutamic acid-rich protein 37 0.013
At4g36520 trichohyalin like protein 37 0.013
At5g44180 unknown protein 36 0.022
At4g11420 putative protein 36 0.022
At1g32490 putative RNA helicase (At1g32490) 36 0.022
At3g05130 hypothetical protein 36 0.029
At3g16000 myosin heavy chain like protein 35 0.038
At1g76720 putative translation initiation factor IF-2 35 0.038
At5g67320 unknown protein 35 0.065
At3g49055 putative protein 35 0.065
At5g60030 KED - like protein 34 0.085
At5g17900 microfibril-associated protein - like 34 0.085
At4g32190 unknown protein 34 0.085
>At3g18790 unknown protein
Length = 300
Score = 491 bits (1264), Expect = e-139
Identities = 241/304 (79%), Positives = 270/304 (88%), Gaps = 5/304 (1%)
Query: 1 MARNEEKAQSMLNRFITMKAEEKKKPKERRPFLATECRDLSEADKWRQQIMREIGRKVAE 60
MARNEEKAQSMLNRFIT K EKKKPKERRP+LA+ECRDL+EADKWRQQI+REIG KVAE
Sbjct: 1 MARNEEKAQSMLNRFITQKESEKKKPKERRPYLASECRDLAEADKWRQQILREIGSKVAE 60
Query: 61 IQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYTRHSAKMTDLDGNIVDVPNP 120
IQNEGLGEHRLRDLNDEINKL+RE+ HWERRIVELGG NY++HSAKMTDL+GNI+DVPNP
Sbjct: 61 IQNEGLGEHRLRDLNDEINKLLRERYHWERRIVELGGHNYSKHSAKMTDLEGNIIDVPNP 120
Query: 121 SGRGPGYRYFGAAKKLPGVRELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGILERL 180
SGRGPGYRYFGAAKKLPGVRELF+KPPELRKR+TRYDIYKRIDA+YYGYRDDEDGILE+L
Sbjct: 121 SGRGPGYRYFGAAKKLPGVRELFEKPPELRKRKTRYDIYKRIDASYYGYRDDEDGILEKL 180
Query: 181 EPSAEAAMRREAAEEWYRLDRIRQEARKGVKS-GEVAEVSAAVREILREEEEDVVEEERM 239
E +E MR+ + EEW RLD +R+EARKG V +AA RE+L EEEEDVVEEERM
Sbjct: 181 ERKSEGGMRKRSVEEWRRLDEVRKEARKGASEVVSVGAAAAAAREVLFEEEEDVVEEERM 240
Query: 240 RGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQSEAKDML 299
+E+ EE EREFVVHVPLPDEKEIEKMVLEKKKM+LL+KY SEDL+++Q+EAK ML
Sbjct: 241 E----REKEEEKEREFVVHVPLPDEKEIEKMVLEKKKMDLLSKYASEDLVEQQTEAKSML 296
Query: 300 NIHR 303
NIHR
Sbjct: 297 NIHR 300
>At1g76810 translation initiation factor IF-2 like protein
Length = 1280
Score = 40.4 bits (93), Expect = 0.001
Identities = 60/265 (22%), Positives = 104/265 (38%), Gaps = 40/265 (15%)
Query: 22 EKKKPKERRPFLATECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKL 81
+KK K++ + D S AD+ + + + +V E G+ + + N++ +
Sbjct: 244 KKKSSKKKGGSVLASVGDDSVADETKTSDTKNV--EVVET-----GKSKKKKKNNKSGRT 296
Query: 82 IREKSHWERRIVELGGPNYTRHSAKMTDLDGNIVDVPNP------SGRGPGYRYFGAAKK 135
++E+ ++ + LG A T ++ P P +G G AAKK
Sbjct: 297 VQEEEDLDKLLAALGETPAAERPASSTPVEEKAAQ-PEPVAPVENAGEKEGEEETAAAKK 355
Query: 136 LPGVRELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGILERLEPSAEAAMRREAAEE 195
K E K + + E+ + E L+P + A + A ++
Sbjct: 356 KK-------KKKEKEKEKKAAAAAAATSSVEVKEEKQEESVTEPLQPKKKDAKGKAAEKK 408
Query: 196 WYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEEDV--VEEERMRGREMKERLEENER 253
+ R QEA +A A +EEEE + EEER R E++ + EE +R
Sbjct: 409 IPKHVREMQEA--------LARRQEAEERKKKEEEEKLRKEEEERRRQEELEAQAEEAKR 460
Query: 254 EFVVHVPLPDEKEIEKMVLEKKKME 278
+ KE EK L +KK+E
Sbjct: 461 K---------RKEKEKEKLLRKKLE 476
>At1g20290 hypothetical protein
Length = 497
Score = 39.3 bits (90), Expect = 0.003
Identities = 30/106 (28%), Positives = 45/106 (42%)
Query: 171 DDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEE 230
++E+ E E E E EE + +E + + E E E EEE
Sbjct: 386 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 445
Query: 231 EDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKK 276
E+ EEE E +E EE E E +E+E + M+++KKK
Sbjct: 446 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKKK 491
Score = 38.5 bits (88), Expect = 0.005
Identities = 33/122 (27%), Positives = 50/122 (40%)
Query: 178 ERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEEDVVEEE 237
E E E E EE + +E + + E E E EEEE+ EEE
Sbjct: 365 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 424
Query: 238 RMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQSEAKD 297
E +E EE E E +E+E E+ E+++ E + E+ +E+ E K
Sbjct: 425 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKY 484
Query: 298 ML 299
M+
Sbjct: 485 MI 486
Score = 38.1 bits (87), Expect = 0.006
Identities = 31/124 (25%), Positives = 52/124 (41%)
Query: 174 DGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEEDV 233
+G + + E E E EE + +E + + E E E EEEE+
Sbjct: 357 EGTIVQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 416
Query: 234 VEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQS 293
EEE E +E EE E E +E+E E+ E+++ E + E+ +E+
Sbjct: 417 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 476
Query: 294 EAKD 297
E ++
Sbjct: 477 EEEE 480
Score = 38.1 bits (87), Expect = 0.006
Identities = 30/106 (28%), Positives = 44/106 (41%)
Query: 171 DDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEE 230
++E+ E E E E EE + +E + + E E E EEE
Sbjct: 385 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 444
Query: 231 EDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKK 276
E+ EEE E +E EE E E +E+E +K ++ KKK
Sbjct: 445 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKK 490
Score = 37.7 bits (86), Expect = 0.008
Identities = 31/112 (27%), Positives = 46/112 (40%)
Query: 171 DDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEE 230
++E+ E E E E EE + +E + + E E E EEE
Sbjct: 378 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 437
Query: 231 EDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNK 282
E+ EEE E +E EE E E +E+E E+ E+KK ++ K
Sbjct: 438 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKK 489
Score = 37.4 bits (85), Expect = 0.010
Identities = 32/125 (25%), Positives = 52/125 (41%)
Query: 173 EDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEED 232
E I++ E E E EE + +E + + E E E EEEE+
Sbjct: 357 EGTIVQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 416
Query: 233 VVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQ 292
EEE E +E EE E E +E+E E+ E+++ E + E+ +E+
Sbjct: 417 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 476
Query: 293 SEAKD 297
E ++
Sbjct: 477 EEEEE 481
Score = 37.4 bits (85), Expect = 0.010
Identities = 32/126 (25%), Positives = 51/126 (40%)
Query: 178 ERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEEDVVEEE 237
E E E E EE + +E + + E E E EEEE+ EEE
Sbjct: 364 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 423
Query: 238 RMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQSEAKD 297
E +E EE E E +E+E E+ E+++ E + E+ +E+ E K
Sbjct: 424 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKK 483
Query: 298 MLNIHR 303
+ + +
Sbjct: 484 YMIVKK 489
Score = 37.0 bits (84), Expect = 0.013
Identities = 32/112 (28%), Positives = 45/112 (39%)
Query: 171 DDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEE 230
++E+ E E E E EE + +E + + E E E EEE
Sbjct: 379 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 438
Query: 231 EDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNK 282
E+ EEE E +E EE E E +E+E E+ EKK M + K
Sbjct: 439 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVKKK 490
Score = 37.0 bits (84), Expect = 0.013
Identities = 33/135 (24%), Positives = 55/135 (40%)
Query: 163 DAAYYGYRDDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAV 222
D+ +Y + + E AE E EE + +E + + E E
Sbjct: 342 DSDFYKFTPSMVHVGEGTIVQAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 401
Query: 223 REILREEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNK 282
E EEEE+ EEE E +E EE E E +E+E E+ E+++ E +
Sbjct: 402 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 461
Query: 283 YVSEDLMDEQSEAKD 297
E+ +E+ E ++
Sbjct: 462 EEEEEEEEEEEEEEE 476
Score = 36.6 bits (83), Expect = 0.017
Identities = 31/114 (27%), Positives = 47/114 (41%)
Query: 171 DDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEE 230
++E+ E E E E EE + +E + + E E E EEE
Sbjct: 372 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 431
Query: 231 EDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYV 284
E+ EEE E +E EE E E +E+E E+ E+++ E KY+
Sbjct: 432 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYM 485
Score = 35.4 bits (80), Expect = 0.038
Identities = 30/112 (26%), Positives = 46/112 (40%)
Query: 171 DDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEE 230
++E+ E E E E EE + +E + + E E E EEE
Sbjct: 377 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 436
Query: 231 EDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNK 282
E+ EEE E +E EE E E +E+E E+ E++K ++ K
Sbjct: 437 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKYMIVK 488
>At2g18540 putative vicilin storage protein (globulin-like)
Length = 699
Score = 38.9 bits (89), Expect = 0.003
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 1/128 (0%)
Query: 170 RDDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREE 229
R +E+ I R + EA R EA + R+E K E E E REE
Sbjct: 429 RREEEEIERRRKEEEEARKREEAKRREEEEAKRREEEETERKKREEEEARKREEERKREE 488
Query: 230 EEDV-VEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDL 288
EE EEER + E E+ + E E + ++E E+ E++++E + E
Sbjct: 489 EEAKRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVERKRREEQERK 548
Query: 289 MDEQSEAK 296
E+ K
Sbjct: 549 RREEEARK 556
Score = 37.4 bits (85), Expect = 0.010
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 178 ERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEED-VVEE 236
+R E + +A R E E+ + + R+E R+ + EV +E R EEE EE
Sbjct: 500 KREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVERKRREEQERKRREEEARKREE 559
Query: 237 ERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLE----KKKMELLNKYVSEDLMDEQ 292
ER R EM +R E+ + + +E+E+ + E K++ E+ + E E+
Sbjct: 560 ERKREEEMAKRREQERQR-------KEREEVERKIREEQERKREEEMAKRREQERQKKER 612
Query: 293 SE 294
E
Sbjct: 613 EE 614
Score = 36.6 bits (83), Expect = 0.017
Identities = 41/160 (25%), Positives = 72/160 (44%), Gaps = 19/160 (11%)
Query: 141 ELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGILERLEPSAEAAMRREAAEEWYRLD 200
E+ K E R+R+ R ++ ++ R +E ER EA R E + +
Sbjct: 520 EMAKKREEERQRKEREEVERK--------RREEQ---ERKRREEEARKREEERKREEEMA 568
Query: 201 RIRQEARKGVKSGEVAEVSAAVREILREEEEDVVEEERMRGREMKERLEENEREFVVHVP 260
+ R++ R+ E EV +RE + E+ + + R + R+ KER EE ER+
Sbjct: 569 KRREQERQ---RKEREEVERKIREEQERKREEEMAKRREQERQKKER-EEMERKKREEEA 624
Query: 261 LPDEKEIEKMVLE----KKKMELLNKYVSEDLMDEQSEAK 296
E+E+ K+ E K++ ++ K E+ M + E K
Sbjct: 625 RKREEEMAKIREEERQRKEREDVERKRREEEAMRREEERK 664
Score = 36.2 bits (82), Expect = 0.022
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 141 ELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGIL---ERLEPSAEAAMRREAAEEWY 197
E+ + + R+R+ R ++ ++I R++E ER + E R++ EE
Sbjct: 566 EMAKRREQERQRKEREEVERKIREEQERKREEEMAKRREQERQKKEREEMERKKREEEAR 625
Query: 198 RLD----RIRQEARKGVKSGEVAEVSAAVREILREEEEDVVEEERMRGREMKERLEENER 253
+ + +IR+E R+ K E E E +R EEE EEE + E + R +E E
Sbjct: 626 KREEEMAKIREEERQR-KEREDVERKRREEEAMRREEERKREEEAAKRAEEERRKKEEEE 684
Query: 254 EFVVHVPLPDEKE 266
E P P E
Sbjct: 685 EKRRWPPQPKPPE 697
Score = 35.4 bits (80), Expect = 0.038
Identities = 39/124 (31%), Positives = 55/124 (43%), Gaps = 5/124 (4%)
Query: 174 DGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEEDV 233
+G L +L E RRE EE R + +EARK ++ E A RE E E
Sbjct: 414 EGELSKLMREIEERKRREE-EEIERRRKEEEEARKREEAKRREEEEAKRRE-EEETERKK 471
Query: 234 VEEERMRGREMKERLEENEREFVVHVPLPDEKEIE---KMVLEKKKMELLNKYVSEDLMD 290
EEE R RE + + EE E + E+E E K E++K E + K E+
Sbjct: 472 REEEEARKREEERKREEEEAKRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQR 531
Query: 291 EQSE 294
++ E
Sbjct: 532 KERE 535
Score = 34.7 bits (78), Expect = 0.065
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 32/168 (19%)
Query: 148 ELRKRRTRYDIYKRIDAAYYGYRDDEDGILERLEPSA---EAAMRREAAEEWYRLDRIRQ 204
E RKRR +I +R R +E+ +R E E A RRE EE R R +
Sbjct: 425 EERKRREEEEIERR--------RKEEEEARKREEAKRREEEEAKRREE-EETERKKREEE 475
Query: 205 EARKGV-----------------KSGEVAEVSAAVREILREEEEDVVEE-ERMRGREMKE 246
EARK K E A RE RE+EE++ ++ E R R+ +E
Sbjct: 476 EARKREEERKREEEEAKRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKERE 535
Query: 247 RLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQSE 294
+E RE E+E K E+K+ E + K ++ ++ E
Sbjct: 536 EVERKRRE--EQERKRREEEARKREEERKREEEMAKRREQERQRKERE 581
Score = 32.0 bits (71), Expect = 0.42
Identities = 37/135 (27%), Positives = 61/135 (44%), Gaps = 11/135 (8%)
Query: 148 ELRKRRTRYDIYKRIDAAYYGYRDDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEAR 207
E KRR + +A R++E E + E +R+ EE ++R R+E +
Sbjct: 489 EEAKRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREE---VERKRREEQ 545
Query: 208 KGVKSGEVAEVSAAVREILREEEEDVV---EEERMR-GREMKERLEENEREFVVHVPLPD 263
+ + E A RE R+ EE++ E+ER R RE ER E+E +
Sbjct: 546 ERKR----REEEARKREEERKREEEMAKRREQERQRKEREEVERKIREEQERKREEEMAK 601
Query: 264 EKEIEKMVLEKKKME 278
+E E+ E+++ME
Sbjct: 602 RREQERQKKEREEME 616
>At1g20920 putative RNA helicase
Length = 1166
Score = 38.9 bits (89), Expect = 0.003
Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 170 RDDEDGILERLEPSAEAAMRREAAE-EWYRLDRIRQEARKGVKSGEVAEVSAAVREILRE 228
+D E ER E E RE E E DR +E +G + E S RE+ E
Sbjct: 152 KDRERREREREEREKERVKERERREREDGERDRREREKERGSRRNRERERS---REVGNE 208
Query: 229 EEEDVVEEERMRGREMKERLEENEREFVV-----HVPLPDEKEIEKMVLEKKKMELLNKY 283
E +D V+ + R R+ +E ERE V H P K +E +K+K K
Sbjct: 209 ESDDDVKRDLKRRRKEGGERKEKEREKSVGRSSRHEDSPKRKSVEDNGEKKEK-----KT 263
Query: 284 VSEDLMDEQSEAKDMLNIHR 303
E+L DEQ + + + R
Sbjct: 264 REEELEDEQKKLDEEVEKRR 283
Score = 33.9 bits (76), Expect = 0.11
Identities = 32/108 (29%), Positives = 49/108 (44%), Gaps = 2/108 (1%)
Query: 170 RDDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREE 229
R D+D + R E + + EE R R E +G + E R+ REE
Sbjct: 83 RRDKDRVKRRSERRKSSDSEDDVEEEDERDKRRVNEKERGHREHERDRGKDRKRDREREE 142
Query: 230 EEDVVEEERMRGREMKER-LEENEREFVVHVPLPDEKEIEKMVLEKKK 276
+D E ER + RE +ER EE E+E V + ++ E+ E++K
Sbjct: 143 RKD-KEREREKDRERREREREEREKERVKERERREREDGERDRREREK 189
Score = 32.0 bits (71), Expect = 0.42
Identities = 60/281 (21%), Positives = 103/281 (36%), Gaps = 33/281 (11%)
Query: 19 KAEEKKKPKERRPFLATECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLND-E 77
+ E+ + K+R+ E R E ++ + + RE R+ E + E + E R+ D E
Sbjct: 124 REHERDRGKDRKRDREREERKDKEREREKDRERRE--REREEREKERVKERERREREDGE 181
Query: 78 INKLIREKSHWERRIVELGGPNYTRHSAKMTDLDGNIVDVPNPSGRGPGYRYFGAAKKLP 137
++ REK RR N R ++ +V N R +K
Sbjct: 182 RDRREREKERGSRR-------NRERERSR---------EVGNEESDDDVKRDLKRRRKEG 225
Query: 138 GVRELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGILERLEPSA-----EAAMRREA 192
G R+ ++ + + D KR G + ++ E LE E RR
Sbjct: 226 GERKEKEREKSVGRSSRHEDSPKRKSVEDNGEKKEKKTREEELEDEQKKLDEEVEKRRRR 285
Query: 193 AEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEEDVVEEERMRGREMKERLEENE 252
+EW L R ++EA K A + E E D E E + ++E
Sbjct: 286 VQEWQELKRKKEEAESESKGDADGNEPKAGKAWTLEGESDDEEGHPEEKSETEMDVDEET 345
Query: 253 REFVVHVPLPDEKEIEKMV-LEKKKMELLNKYVSEDLMDEQ 292
+ P+ KMV LE + +++ + +DE+
Sbjct: 346 K--------PENDGDAKMVDLENETAATVSESGGDGAVDEE 378
>At4g31570 putative protein
Length = 2712
Score = 37.7 bits (86), Expect = 0.008
Identities = 34/123 (27%), Positives = 57/123 (45%), Gaps = 18/123 (14%)
Query: 6 EKAQSMLNRF-------ITMKAEE-KKKPKERRPFLATECRDLSEADKWRQQIMREIGRK 57
E +SM+NR + AE ++ KE + +A R+L E D + E+ +
Sbjct: 2249 ESVRSMVNRLSSAVKELVVANAETLERNEKEMKVIIANLQRELHEKDIQNNRTCNELVGQ 2308
Query: 58 VAEIQN------EGL--GEHRLRDLNDEINKLIREKSHWERRIVEL--GGPNYTRHSAKM 107
V E Q E L R+RD+ D++ L+RE+ + R+ EL G +++ K+
Sbjct: 2309 VKEAQAGAKIFAEDLQSASARMRDMQDQLGILVRERDSMKERVKELLAGQASHSELQEKV 2368
Query: 108 TDL 110
T L
Sbjct: 2369 TSL 2371
>At5g44610 unknown protein
Length = 168
Score = 37.4 bits (85), Expect = 0.010
Identities = 40/155 (25%), Positives = 73/155 (46%), Gaps = 22/155 (14%)
Query: 133 AKKLPGVRELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGILERLEPSAEAAMRRE- 191
+K +P +++LF+K P +K + + ++ E+ +++ EP+ E + E
Sbjct: 6 SKVVPRMKKLFEKSPA-KKEVVEEEKPREVEVV-------EEVVVKTEEPAKEGETKPEE 57
Query: 192 ---AAEEWYRLDRIRQEARKGVKSGEVA---EVSAAVREILR----EEEEDVVEEERMRG 241
E+ + ++E K V+ +A E AV E + EE++ VEEE+
Sbjct: 58 IIATGEKEIEIVEEKKEEAKPVEVPVLAAAEEKKPAVEEEKKTAPVEEKKPAVEEEKKPA 117
Query: 242 REMKERLEENEREFVVHVPL---PDEKEIEKMVLE 273
E K+ +EE ++E V VP+ P K E V+E
Sbjct: 118 VEEKKPVEEEKKEVVAAVPVAETPSTKAPETPVVE 152
>At5g27330 glutamic acid-rich protein
Length = 628
Score = 37.0 bits (84), Expect = 0.013
Identities = 28/102 (27%), Positives = 51/102 (49%), Gaps = 7/102 (6%)
Query: 202 IRQEARKGVKSGEVAEVSAAVREILREEE--EDVVEEERMRGREMKERLEENEREFVVHV 259
+R E R+ EV + +++E + E+V+E E+ E LEE RE V
Sbjct: 196 VRLEMREVSLGEEVGRLKCENGRLVKERKKREEVIERGNRERSELVESLEEKVREIDVL- 254
Query: 260 PLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQSEAKDMLNI 301
++EIE +V EK ++E++ + E +++ + + DM I
Sbjct: 255 ----KREIEGVVKEKMEVEMVRRDQREMIVELEKKLGDMNEI 292
>At4g36520 trichohyalin like protein
Length = 1432
Score = 37.0 bits (84), Expect = 0.013
Identities = 33/128 (25%), Positives = 56/128 (42%), Gaps = 15/128 (11%)
Query: 177 LERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEED---- 232
LE+ E + RE AE R R++A + K E E+ ++E +EEE+
Sbjct: 668 LEQEEKERKIKEAREKAENERRAVEAREKAEQERKMKEQQELELQLKEAFEKEEENRRMR 727
Query: 233 ---VVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLM 289
+E+E+ R + EENER ++ EK LE++ L + E +
Sbjct: 728 EAFALEQEKERRIKEAREKEENERRI--------KEAREKAELEQRLKATLEQEEKERQI 779
Query: 290 DEQSEAKD 297
E+ E ++
Sbjct: 780 KERQEREE 787
Score = 35.0 bits (79), Expect = 0.050
Identities = 62/301 (20%), Positives = 122/301 (39%), Gaps = 58/301 (19%)
Query: 2 ARNEEKAQSMLNRFITMKAEEKKKPKERRPFLATECRDLSEAD-KWRQQIMREIGRKVA- 59
A NE++ ++ L + + ++ + K A E R+ +E + K ++Q E+ K A
Sbjct: 658 AENEKRLKAALEQEEKERKIKEAREKAENERRAVEAREKAEQERKMKEQQELELQLKEAF 717
Query: 60 --EIQNEGLGE-HRLRDLNDEINKLIREKSHWERRIVELGGPNYTRHSAKMTDLDGNIVD 116
E +N + E L + K REK ERRI E R A++
Sbjct: 718 EKEEENRRMREAFALEQEKERRIKEAREKEENERRIKE------AREKAELE-------- 763
Query: 117 VPNPSGRGPGYRYFGAAKKLPGVRELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGI 176
++L E +K ++++R+ R ++E
Sbjct: 764 -----------------QRLKATLEQEEKERQIKERQER--------------EENERRA 792
Query: 177 LERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEEDVVEE 236
E LE + +EA E+ ++ R+ ++ E E +RE + EE++
Sbjct: 793 KEVLEQAENERKLKEALEQ-------KENERRLKETREKEENKKKLREAIELEEKEKRLI 845
Query: 237 ERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQSEAK 296
E E++ RL+E+ + + + L + KE E++ E ++ + N+ + E+S+ K
Sbjct: 846 EAFERAEIERRLKEDLEQEEMRMRLQEAKERERLHRENQEHQ-ENERKQHEYSGEESDEK 904
Query: 297 D 297
+
Sbjct: 905 E 905
>At5g44180 unknown protein
Length = 1694
Score = 36.2 bits (82), Expect = 0.022
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 171 DDEDGI-LERLEPSAEAAMRRE--AAEEWYRLDRIRQEARKGVKSGEVA-EVSAAVREIL 226
+D+D + LER + EA + RE A E+ R + +Q+ + + ++ E+ RE
Sbjct: 317 EDDDALQLERHRKNEEARIAREVEAHEKRIRRELEKQDMLRRKREEQIRKEMERQDRERR 376
Query: 227 REEEEDVVEEERMRGREMKERLEENER--EFVVHVPLPDEKEIEKMVLEKKK 276
+EEE + E++R R +KE++ E +R +F+ + EK +K + K+K
Sbjct: 377 KEEERLLREKQREEERYLKEQMRELQRREKFLKKETIRAEKMRQKEEMRKEK 428
>At4g11420 putative protein
Length = 987
Score = 36.2 bits (82), Expect = 0.022
Identities = 27/114 (23%), Positives = 61/114 (52%), Gaps = 9/114 (7%)
Query: 188 MRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEEDVVEEERMRGREMKER 247
M RE ++ +L ++ +EA + + E+AE + ILRE EE +EE + E ++R
Sbjct: 585 MEREEEQKRLKLQKLTEEAEQKRLAAELAE--RRKQRILREIEEKELEEAQALLEETEKR 642
Query: 248 LEENEREFVVHVPLPDEKEIEKMVLEKKKM--ELLNKYVSEDLMDEQSEAKDML 299
+++ +++ PL D +++ K ++++ + +L + E + + ++ D L
Sbjct: 643 MKKGKKK-----PLLDGEKVTKQSVKERALTEQLKERQEMEKKLQKLAKTMDYL 691
>At1g32490 putative RNA helicase (At1g32490)
Length = 1044
Score = 36.2 bits (82), Expect = 0.022
Identities = 42/162 (25%), Positives = 79/162 (47%), Gaps = 27/162 (16%)
Query: 149 LRKRRTRYDIYKRIDAAYYGYRDDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARK 208
+RK++T Y +DA DDED ++ + S + + + ++ +R ++ +
Sbjct: 89 VRKQKT----YALLDAD-----DDEDEVVVEKKSSVSESRKSDKGKKRFR----KKSGQS 135
Query: 209 GVKSGEVA--EVSAAVREILREEEE-DVVEEERMRGREMKERLEEN--EREFVVHVPLPD 263
GEVA E S VR + EE++ EEER+R ++ +E LE++ +R+ L +
Sbjct: 136 DESDGEVAVREDSRHVRRKVSEEDDGSESEEERVRDQKEREELEQHLKDRDTARTRKLTE 195
Query: 264 E----KEIEKMV-----LEKKKMELLNKYVSEDLMDEQSEAK 296
+ KE E+ V LEK + L K ++ + ++ + K
Sbjct: 196 QTLSKKEKEEAVRRANALEKDDLYSLRKVSRQEYLKKREQKK 237
>At3g05130 hypothetical protein
Length = 634
Score = 35.8 bits (81), Expect = 0.029
Identities = 56/252 (22%), Positives = 118/252 (46%), Gaps = 23/252 (9%)
Query: 57 KVAEIQNEGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYTRHSAKMTDLDGNIVD 116
++ +I+ +G+ E R L D++N+ +R + E+ + +L M G +V+
Sbjct: 270 EIVKIEQKGVIEELERKL-DKLNETVRSLTKEEKVLRDLVIGLEKNLDESMEKESGMMVE 328
Query: 117 VPNPSGRGPGYRYFGAAKKLPGVRELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGI 176
+ + G+ + ++L G + L +K E+ ++ D K ID + E+ I
Sbjct: 329 I-DALGKERTIKE-SEVERLIGEKNLIEKQMEMLNVQSS-DKGKLIDQLSREKVELEERI 385
Query: 177 LERLEPSAEAAMRREAAEEWYRLDRIR-----QEARKGVKSGEVAEVSAAVR--EILREE 229
R E + R+A E + + ++ Q G S +V ++S A+ E+ REE
Sbjct: 386 FSRERKLVE--LNRKADELTHAVAVLQKNCDDQTKINGKLSCKVDQLSNALAQVELRREE 443
Query: 230 EEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLM 289
+ ++EE+ G ++K + ++E+ K +E+ LEK K+E + + +++ +
Sbjct: 444 ADKALDEEKRNGEDLKAEVLKSEKMVA--------KTLEE--LEKVKIERKSLFSAKNDL 493
Query: 290 DEQSEAKDMLNI 301
+ QSE+ N+
Sbjct: 494 ESQSESLKSENV 505
>At3g16000 myosin heavy chain like protein
Length = 727
Score = 35.4 bits (80), Expect = 0.038
Identities = 66/308 (21%), Positives = 127/308 (40%), Gaps = 25/308 (8%)
Query: 4 NEEKAQSMLNRFITMKAEEKKKPKERRPFLATECRDLSEADKWRQQIMREIGRKVAEIQN 63
+EEKAQ RF A+++ + KE RDL+EA +Q E+ R +E+ +
Sbjct: 282 SEEKAQ----RFNASLAKKEAELKELNSIYTQTSRDLAEAKLEIKQQKEELIRTQSELDS 337
Query: 64 EGLGEHRLRDLNDEINKLIREKSHWERRIVELGGPNYTRHSAKMTDLDGNIVDVPNPSGR 123
+ + +LN I L+ EK E I +L + + K+T D S +
Sbjct: 338 K---NSAIEELNTRITTLVAEK---ESYIQKLDSISKDYSALKLTSETQAAADAELISRK 391
Query: 124 GPGYRYF--GAAKKLPGVRELFDKPPELRKRRTRYDIYKRI----DAAYYGYRDDEDGIL 177
+ + L V + DK +L + +Y+ KR+ R + +G
Sbjct: 392 EQEIQQLNENLDRALDDVNKSKDKVADLTE---KYEDSKRMLDIELTTVKNLRHELEGTK 448
Query: 178 ERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEE--DVVE 235
+ L+ S + E + R + E+ + E E L E++ ++
Sbjct: 449 KTLQASRDRVSDLETMLDESRALCSKLESELAIVHEEWKEAKERYERNLDAEKQKNEISA 508
Query: 236 EERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQSEA 295
E ++++ R+++ E E V H E ++ L+K+ +E+ K V + + E
Sbjct: 509 SELALEKDLRRRVKD-ELEGVTHE--LKESSVKNQSLQKELVEIYKK-VETSNKELEEEK 564
Query: 296 KDMLNIHR 303
K +L++++
Sbjct: 565 KTVLSLNK 572
>At1g76720 putative translation initiation factor IF-2
Length = 1224
Score = 35.4 bits (80), Expect = 0.038
Identities = 59/259 (22%), Positives = 104/259 (39%), Gaps = 32/259 (12%)
Query: 27 KERRPFLATECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKS 86
K++ + D S AD+ Q + K E+ G + + ++ N ++ + + E+
Sbjct: 219 KKKGSIVLASLGDDSVADETSQA--KTPDTKSVEVIETGKIKKKKKNKN-KVARTLEEED 275
Query: 87 HWERRIVELGGPNYTRHSAKMTDLDGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFDKP 146
++ + ELG A T + P GP A +K +
Sbjct: 276 DLDKLLAELGETPAAERPASSTPEVEKVQAQP-----GPVAPVENAGEKEGEKETVETAA 330
Query: 147 PELRKRRTRYDIYKRIDAAYYGYRD-----DEDGILERLEPSAEAAMRREAAEEWYRLDR 201
+ +K++ D K+ AA + E+ + E L+P + A + A ++ + R
Sbjct: 331 AKKKKKKKEKDKEKKAAAAATSSVEAKEEKQEESVTEPLQPKKKDAKGKAAEKKIPKHVR 390
Query: 202 IRQEARKGVKSGEVAEVSAAVREILREEEEDV--VEEERMRGREMKERLEENEREFVVHV 259
QEA +A A +EEEE + EEER R E++ + EE +R+
Sbjct: 391 EMQEA--------LARRQEAEERKKKEEEEKLRKEEEERRRQEELEAQAEEAKRK----- 437
Query: 260 PLPDEKEIEKMVLEKKKME 278
KE EK L +KK+E
Sbjct: 438 ----RKEKEKEKLLRKKLE 452
>At5g67320 unknown protein
Length = 613
Score = 34.7 bits (78), Expect = 0.065
Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 156 YDIYKRIDAAYYGYRDDEDGILERLEPSAEAAMRREAAEEWYR-LDRIRQEARKGVKSGE 214
+ ++ +D ++ +D + E+ + R+ ++E + ++R + R K +
Sbjct: 78 FSFFQPLDLISKDVKELQDMLREKKRKERDMEKERDRSKENDKGVEREHEGDRNRAKEKD 137
Query: 215 VAEVSAAVREILREEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEK 274
E ++ RE E + +E E+ R RE ER +E ERE + E+E +++ LEK
Sbjct: 138 RHE-----KQKEREREREKLEREKEREREKIEREKEREREKMEREIF--EREKDRLKLEK 190
Query: 275 KKMELLNKYVSEDLMDEQSEAKDM 298
++ E+ + E + E+S K +
Sbjct: 191 ER-EIEREREREKIEREKSHEKQL 213
>At3g49055 putative protein
Length = 480
Score = 34.7 bits (78), Expect = 0.065
Identities = 41/153 (26%), Positives = 71/153 (45%), Gaps = 13/153 (8%)
Query: 153 RTRYDIYKRIDAAYYGYRDDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKS 212
R ++++ DA + E GILE + E E ++E + + EA++ K
Sbjct: 53 RVNHELFHERDALRRRNSELEAGILEEVMIREEMKRDLEVSKE--TVSELEGEAKEKTKL 110
Query: 213 -GEVAEVSAAVREILRE-----EEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKE 266
++A+ ++ + L + EE+V EEER R E KE ++ E V V E
Sbjct: 111 LSDIADYVRSMEDRLSKLIRCLNEENVPEEERGRKLETKEYNSKSILELVKEVVTKLETF 170
Query: 267 IEKMVLEKKKMELLNKYVSEDLMDEQSEAKDML 299
E +KKKMEL S + ++E++ ++L
Sbjct: 171 QES--TKKKKMELSR---SVEFLEEENRDINVL 198
>At5g60030 KED - like protein
Length = 292
Score = 34.3 bits (77), Expect = 0.085
Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 173 EDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEED 232
++ + E+LE ++A R+E ++ + + + K E + SA ++E + ++ED
Sbjct: 166 DEKVKEKLEDEQKSADRKERKKKKSKKNNDEDVVDEKEKL-EDEQKSAEIKEKKKNKDED 224
Query: 233 VVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQ 292
VV+E+ E ++R E ++E K E++V E++K + K E++ E+
Sbjct: 225 VVDEKEKEKLEDEQRSGERKKE-----KKKKRKSDEEIVSEERKSKKKRK-SDEEMGSEE 278
Query: 293 SEAK 296
++K
Sbjct: 279 RKSK 282
>At5g17900 microfibril-associated protein - like
Length = 435
Score = 34.3 bits (77), Expect = 0.085
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 170 RDDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVA----EVSAAVREI 225
++D+ G+ + +P +RR A + D +R + R+ ++ E+ E S
Sbjct: 62 KNDDLGVARKDDPR----LRRLAKTKVENRDEVRADHRR-IRQAEIIYTEEEESRNQENR 116
Query: 226 LREEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKME 278
+++ED +EE R R RE R + E + PL +E EI++ E+++ E
Sbjct: 117 DEDDDEDALEERRRRIREKNLRRAQEEAALL---PLEEEDEIQEEEEEEEESE 166
Score = 28.9 bits (63), Expect = 3.6
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 171 DDEDGILERLEPSAEAAMRREAAEEWYRL-----DRIRQEARKGVKSGEVAEVSAAVREI 225
DDED + ER E +RR A EE L D I++E + +S + + I
Sbjct: 120 DDEDALEERRRRIREKNLRR-AQEEAALLPLEEEDEIQEEEEEEEESEYETDSEDDMPGI 178
Query: 226 LREEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVS 285
+ V + ER E +ERLE E +E+ K LE++K+E V
Sbjct: 179 AMIKPVFVPKAERDTIAE-RERLEAEEEAL---------EELAKRKLEQRKLETKQIVVE 228
Query: 286 EDLMDEQ 292
E DE+
Sbjct: 229 EVRKDEE 235
>At4g32190 unknown protein
Length = 783
Score = 34.3 bits (77), Expect = 0.085
Identities = 37/170 (21%), Positives = 74/170 (42%), Gaps = 19/170 (11%)
Query: 141 ELFDKPPELRKRRTRYDIYKRIDAAYYGYRDDEDGILER-LEPSAEAAMRREA------- 192
+LF + L ++ ++ +Y D Y G+LE LE + A ++RE
Sbjct: 78 KLFARTHRLERQTNQHSVYPDDDDLPYSNL----GVLESDLEAALVALLKREEDLHDAER 133
Query: 193 --AEEWYRLDRIRQEARKGVKS-GEVAEVSAAVREILREEEEDVVEEERMRGREMKERLE 249
+ +L+R ++E K K+ E + +++E L+ ++ + R E+K +L
Sbjct: 134 KLLSDKNKLNRAKEELEKREKTISEASLKHESLQEELKRANVELASQAR-EIEELKHKLR 192
Query: 250 ENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQSEAKDML 299
E + E L +++ LEK + E+ N+ + + E+K L
Sbjct: 193 ERDEE---RAALQSSLTLKEEELEKMRQEIANRSKEVSMAISEFESKSQL 239
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.314 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,110,287
Number of Sequences: 26719
Number of extensions: 340390
Number of successful extensions: 2126
Number of sequences better than 10.0: 188
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 1610
Number of HSP's gapped (non-prelim): 387
length of query: 303
length of database: 11,318,596
effective HSP length: 99
effective length of query: 204
effective length of database: 8,673,415
effective search space: 1769376660
effective search space used: 1769376660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0282.6