BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.15
(1070 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59720 copia-type reverse transcriptase-like protein 541 e-154
At1g48710 hypothetical protein 538 e-153
At3g61330 copia-type polyprotein 536 e-152
At1g58140 hypothetical protein 529 e-150
At2g15650 putative retroelement pol polyprotein 496 e-140
At1g32590 hypothetical protein, 5' partial 460 e-129
At3g60170 putative protein 456 e-128
At2g17490 putative retroelement pol polyprotein 436 e-122
At3g25450 hypothetical protein 369 e-102
At2g05960 putative retroelement pol polyprotein 364 e-100
At1g37110 343 4e-94
At2g05390 putative retroelement pol polyprotein 334 2e-91
At4g21360 putative transposable element 328 1e-89
At2g13930 putative retroelement pol polyprotein 321 1e-87
At2g07550 putative retroelement pol polyprotein 318 8e-87
At3g45520 copia-like polyprotein 300 2e-81
At5g35820 copia-like retrotransposable element 297 2e-80
At2g21460 putative retroelement pol polyprotein 296 5e-80
At4g10460 putative retrotransposon 274 2e-73
At2g10610 pseudogene 273 3e-73
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 541 bits (1394), Expect = e-154
Identities = 294/628 (46%), Positives = 391/628 (61%), Gaps = 28/628 (4%)
Query: 29 GHAEADCRY-RDKPQCNYCKKFGHMEKYCYS----KNRHQANLAEE--QEQDQYLLYATQ 81
GH ++ RY + +C C KFGH C + K + +AN EE QE+D L+ + +
Sbjct: 268 GHPKS--RYDKSSVKCYNCGKFGHYASECKAPSNKKFKEKANYVEEKIQEEDMLLMASYK 325
Query: 82 DSARETGGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*K 141
+E WYLDSG SNHM +S+F +D+SV+ V LG+ + +E KGKG +++
Sbjct: 326 KDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKN 385
Query: 142 GT-RLISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSN 200
G + IS+V +P++K N+LS+GQ++E+GY + + + I DK I +V M K+
Sbjct: 386 GDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDKESNL--ITKVPMSKNR 443
Query: 201 ISFPLNFKY-VANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEAC 259
+ F LN + +A ++SWLWH RFGH N L+LL +K M+R LP + N+ C
Sbjct: 444 M-FVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVC 502
Query: 260 ERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWV 319
E CLLG Q ++SF RA+ LELIHTDVCGP++ S + YF+LF DDFSR TWV
Sbjct: 503 EGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWV 562
Query: 320 YFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVA 379
YFLK KSEVF +FKKFKA VEK+SG IK +RSD G E+TS+EF K+CED GI RQLTV
Sbjct: 563 YFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVP 622
Query: 380 YIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPI 439
PQQNGV+ERK RTI+EMARSMLK K + WAEAV AVY+LNR PT +V KTP
Sbjct: 623 RSPQQNGVAERKNRTILEMARSMLKSKRLPKEL-WAEAVACAVYLLNRSPTKSVSGKTPQ 681
Query: 440 EAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKK 499
EAW G+KP HLRVFGSI + HVPD KR+KL+DK+ + IF+GY SKGY++YN TKK
Sbjct: 682 EAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKK 741
Query: 500 LTISRDVEVDGNASWNWDEEKVEKNILIPTQRPQEEVEEEAENPGEPTSPPQQ--QEQQQ 557
ISR++ D W+W+ + + N + + E E EPT+PP Q +
Sbjct: 742 TIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTSPTSSQIE 801
Query: 558 DLSPESTPRRVRFLVDVYET----------CNLAILEPESFEAASKQEVWVKAMEEEIKM 607
+ S E TP R R + ++YE C A EP F+ A +++ W AM+EEIK
Sbjct: 802 ESSSERTP-RFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKS 860
Query: 608 IEKNNTWELVDCPHGKDIIGVKWVYKTK 635
I+KN+TWEL P+G IGVKWVYK K
Sbjct: 861 IQKNDTWELTSLPNGHKAIGVKWVYKAK 888
>At1g48710 hypothetical protein
Length = 1352
Score = 538 bits (1386), Expect = e-153
Identities = 293/628 (46%), Positives = 389/628 (61%), Gaps = 28/628 (4%)
Query: 29 GHAEADCRY-RDKPQCNYCKKFGHMEKYCYS----KNRHQANLAEE--QEQDQYLLYATQ 81
GH ++ RY + +C C KFGH C + K +AN EE QE+D L+ + +
Sbjct: 268 GHPKS--RYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYVEEKIQEEDMLLMASYK 325
Query: 82 DSARETGGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*K 141
+E WYLDSG SNHM +S+F +D+SV+ V LG+ + +E KGKG +++
Sbjct: 326 KDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKN 385
Query: 142 GT-RLISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSN 200
G + IS+V +P++K N+LS+GQ++E+GY + + + I D+ I +V M K+
Sbjct: 386 GDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNL--ITKVPMSKNR 443
Query: 201 ISFPLNFKY-VANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEAC 259
+ F LN + +A ++SWLWH RFGH N L+LL +K M+R LP + N+ C
Sbjct: 444 M-FVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVC 502
Query: 260 ERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWV 319
E CLLG Q ++SF RA+ LELIHTDVCGP++ S + YF+LF DDFSR TWV
Sbjct: 503 EGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWV 562
Query: 320 YFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVA 379
YFLK KSEVF +FKKFKA VEK+SG IK +RSDRG E+TS+EF K+CED GI RQLTV
Sbjct: 563 YFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVP 622
Query: 380 YIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPI 439
PQQNGV+ERK RTI+EMARSMLK K + WAEAV AVY+LNR PT +V KTP
Sbjct: 623 RSPQQNGVAERKNRTILEMARSMLKSKRLPKEL-WAEAVACAVYLLNRSPTKSVSGKTPQ 681
Query: 440 EAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKK 499
EAW G+K HLRVFGSI + HVPD KR KL+DK+ + IF+GY SKGY++YN TKK
Sbjct: 682 EAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKK 741
Query: 500 LTISRDVEVDGNASWNWDEEKVEKNILIPTQRPQEEVEEEAENPGEPTSPPQQ--QEQQQ 557
ISR++ D W+W+ + + N + + E E EPT+PP Q +
Sbjct: 742 TIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIE 801
Query: 558 DLSPESTPRRVRFLVDVYET----------CNLAILEPESFEAASKQEVWVKAMEEEIKM 607
+ S E TP R R + ++YE C A EP F+ A +++ W AM+EEIK
Sbjct: 802 ESSSERTP-RFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKS 860
Query: 608 IEKNNTWELVDCPHGKDIIGVKWVYKTK 635
I+KN+TWEL P+G IGVKWVYK K
Sbjct: 861 IQKNDTWELTSLPNGHKTIGVKWVYKAK 888
>At3g61330 copia-type polyprotein
Length = 1352
Score = 536 bits (1382), Expect = e-152
Identities = 292/628 (46%), Positives = 389/628 (61%), Gaps = 28/628 (4%)
Query: 29 GHAEADCRY-RDKPQCNYCKKFGHMEKYCYS----KNRHQANLAEE--QEQDQYLLYATQ 81
GH ++ RY + +C C KFGH C + K +A+ EE QE+D L+ + +
Sbjct: 268 GHPKS--RYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKAHYVEEKIQEEDMLLMASYK 325
Query: 82 DSARETGGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*K 141
++ WYLDSG SNHM +S+F +D+SV+ V LG+ + +E KGKG +++
Sbjct: 326 KDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKN 385
Query: 142 GT-RLISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSN 200
G + IS+V +P++K N+LS+GQ++E+GY + + + I D+ I +V M K+
Sbjct: 386 GDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNL--ITKVPMSKNR 443
Query: 201 ISFPLNFKY-VANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEAC 259
+ F LN + +A ++SWLWH RFGH N L+LL +K M+R LP + N+ C
Sbjct: 444 M-FVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVC 502
Query: 260 ERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWV 319
E CLLG Q ++SF RA+ LELIHTDVCGP++ S + YF+LF DDFSR TWV
Sbjct: 503 EGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWV 562
Query: 320 YFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVA 379
YFLK KSEVF +FKKFKA VEK+SG IK +RSDRG E+TS+EF K+CED GI RQLTV
Sbjct: 563 YFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVP 622
Query: 380 YIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPI 439
PQQNGV ERK RTI+EMARSMLK K + WAEAV AVY+LNR PT +V KTP
Sbjct: 623 RSPQQNGVVERKNRTILEMARSMLKSKRLPKEL-WAEAVACAVYLLNRSPTKSVSGKTPQ 681
Query: 440 EAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKK 499
EAW G+KP HLRVFGSI + HVPD KR KL+DK+ + IF+GY SKGY++YN TKK
Sbjct: 682 EAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKK 741
Query: 500 LTISRDVEVDGNASWNWDEEKVEKNILIPTQRPQEEVEEEAENPGEPTSPPQQ--QEQQQ 557
ISR++ D W+W+ + + N + + E E EPT+PP Q +
Sbjct: 742 TIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIE 801
Query: 558 DLSPESTPRRVRFLVDVYET----------CNLAILEPESFEAASKQEVWVKAMEEEIKM 607
+ S E TP R R + ++YE C A EP F+ A +++ W AM+EEIK
Sbjct: 802 ESSSERTP-RFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKS 860
Query: 608 IEKNNTWELVDCPHGKDIIGVKWVYKTK 635
I+KN+TWEL P+G IGVKWVYK K
Sbjct: 861 IQKNDTWELTSLPNGHKAIGVKWVYKAK 888
>At1g58140 hypothetical protein
Length = 1320
Score = 529 bits (1363), Expect = e-150
Identities = 288/616 (46%), Positives = 381/616 (61%), Gaps = 36/616 (5%)
Query: 29 GHAEADCRY-RDKPQCNYCKKFGHMEKYCYS----KNRHQANLAEE--QEQDQYLLYATQ 81
GH ++ RY + +C C KFGH C + K +AN EE QE+D L+ + +
Sbjct: 268 GHPKS--RYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYVEEKIQEEDMLLMASYK 325
Query: 82 DSARETGGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*K 141
+E WYLDSG SNHM +S+F +D+SV+ V LG+ + +E KGKG +++
Sbjct: 326 KDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKN 385
Query: 142 GT-RLISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSN 200
G + IS+V +P++K N+LS+GQ++E+GY + + + I D+ I +V M K+
Sbjct: 386 GDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNL--ITKVPMSKNR 443
Query: 201 ISFPLNFKY-VANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEAC 259
+ F LN + +A ++SWLWH RFGH N L+LL +K M+R LP + N+ C
Sbjct: 444 M-FVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVC 502
Query: 260 ERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWV 319
E CLLG Q ++SF RA+ LELIHTDVCGP++ S + YF+LF DDFSR TWV
Sbjct: 503 EGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWV 562
Query: 320 YFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVA 379
YFLK KSEVF +FKKFKA VEK+SG IK +RSDRG E+TS+EF K+CED GI RQLTV
Sbjct: 563 YFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVP 622
Query: 380 YIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPI 439
PQQNGV+ERK RTI+EMARSMLK K + WAEAV AVY+LNR PT +V KTP
Sbjct: 623 RSPQQNGVAERKNRTILEMARSMLKSKRLPKEL-WAEAVACAVYLLNRSPTKSVSGKTPQ 681
Query: 440 EAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKK 499
EAW G+KP HLRVFGSI + HVPD KR KL+DK+ + IF+GY SKGY++YN TKK
Sbjct: 682 EAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKK 741
Query: 500 LTISRDVEVDGNASWNWDEEKVEKNILIPTQRPQEEVEEEAENPGEPTSPPQQQEQQQDL 559
ISR++ D W+W+ + + N + + E E EPT+PP
Sbjct: 742 TIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKPEPTREEPPSEEPTTPP--------T 793
Query: 560 SPESTPRRVRFLVDVYETCNLAILEPESFEAASKQEVWVKAMEEEIKMIEKNNTWELVDC 619
SP S+ + E C EP F+ A +++ W AM+EEIK I+KN+TWEL
Sbjct: 794 SPTSS--------QIEEKC-----EPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSL 840
Query: 620 PHGKDIIGVKWVYKTK 635
P+G IGVKWVYK K
Sbjct: 841 PNGHKAIGVKWVYKAK 856
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 496 bits (1276), Expect = e-140
Identities = 268/671 (39%), Positives = 390/671 (57%), Gaps = 62/671 (9%)
Query: 30 HAEADCRYRDKP-----------QCNYCKKFGHMEKYCYSKNRHQAN--LAEEQEQDQYL 76
H E +CR + K +C C K GH C SKN+ +A+ L EE + ++
Sbjct: 250 HTEEECREKPKNDDHGKNKRSNIKCYKCGKIGHYANECRSKNKERAHVTLEEEDVNEDHM 309
Query: 77 LYATQDSARET--GGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGT 134
L++ + T W +DSGC+NHM K+E F NI+ S+KV +R+ NG +V + GKG
Sbjct: 310 LFSASEEESTTLREDVWLVDSGCTNHMTKEERYFSNINKSIKVPIRVRNGDIVMTAGKGD 369
Query: 135 VMVET*KGTRLISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQV 194
+ V T G R+I +V LVP L++NLLS+ Q+I GY + F+ C I D + K + +
Sbjct: 370 ITVMTRHGKRIIKNVFLVPGLEKNLLSVPQIISSGYWVRFQDKRCIIQDANGKEI----M 425
Query: 195 KMQKSNISFPLNFKYVANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKE 254
++ ++ SF + V AM A V WH+R GH + + L+ + K ++ LP K
Sbjct: 426 NIEMTDKSFKIKLSSVEEEAMTANVQTEETWHKRLGHVSNKRLQQMQDKELVNGLPRFKV 485
Query: 255 SNEACERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFS 314
+ E C+ C LG Q R SF + + ++ LE++HTDVCGPM+ S D +RY++LF DD++
Sbjct: 486 TKETCKACNLGKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYT 545
Query: 315 RMTWVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIER 374
M WVYFLK KSE F FKKFKALVEKQS IK L R + FCEDEGI R
Sbjct: 546 HMCWVYFLKQKSETFATFKKFKALVEKQSNCSIKTL----------RPMEVFCEDEGINR 595
Query: 375 QLTVAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQ 434
Q+T+ Y PQQNG +ERK R+++EMARSML E+ + WAEAVYT+ Y+ NR P+ A++
Sbjct: 596 QVTLPYSPQQNGAAERKNRSLVEMARSMLVEQDLPLKL-WAEAVYTSAYLQNRLPSKAIE 654
Query: 435 NK-TPIEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVY 493
+ TP+E WCG KP+ HLR+FGSICY H+PD KR KL+ K GI +GYS ++KGYRV+
Sbjct: 655 DDVTPMEKWCGHKPNVSHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKGYRVF 714
Query: 494 NLQTKKLTISRDVEVDGNASWNWD-EEKVEKNIL-----IPTQRPQEE--------VEEE 539
L+ +K+ +SRDV + W+WD +E+V+K + I R Q+E +++
Sbjct: 715 LLEDEKVEVSRDVVFQEDKKWDWDKQEEVKKTFVMSINDIQESRDQQETSSHDLSQIDDH 774
Query: 540 AENPGEPTSPP--QQQEQQQDLSPESTPRRVRFLVDV---------------YETCNLAI 582
A N TS Q Q++ +P++ + + ++ E C +A
Sbjct: 775 ANNGEGETSSHVLSQVNDQEERETSESPKKYKSMKEILEKAPRMENDEAAQGIEACLVAN 834
Query: 583 LEPESFEAASKQEVWVKAMEEEIKMIEKNNTWELVDCPHGKDIIGVKWVYKTKLKP*WHY 642
EP++++ A + W +AM EEIK+IEKN TW+LVD P K++I VKW+YK K ++
Sbjct: 835 EEPQTYDEARGDKEWEEAMNEEIKVIEKNRTWKLVDKPEKKNVISVKWIYKIKTDASGNH 894
Query: 643 TKAQGEASSEG 653
K + + G
Sbjct: 895 VKHKARLVARG 905
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 460 bits (1184), Expect = e-129
Identities = 259/640 (40%), Positives = 359/640 (55%), Gaps = 51/640 (7%)
Query: 38 RDKPQCNYCKKFGHMEKYCYSKNRHQANLAEEQEQDQYLLYATQDSARETGGSWYLDSGC 97
RD +C C K GH + C S + +AN E E+D L+ + E W+LDSGC
Sbjct: 207 RDTVECFKCHKMGHYKAECPSWEK-EANYVE-MEEDLLLMAHVEQIGDEEKQIWFLDSGC 264
Query: 98 SNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*KGTRLISDVLLVPNLKE 157
SNHM F +D K VRLG+ + +GKG + +E ++ISDV VP LK
Sbjct: 265 SNHMCGTREWFLELDSGFKQNVRLGDDRRMAVEGKGKLRLEVDGRIQVISDVYFVPGLKN 324
Query: 158 NLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSNISFPLNFKYVANIAMKA 217
NL S+GQ+ ++G EGDVC ++ K +KR+ + M K+ + F A +
Sbjct: 325 NLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRM-VMHSTMTKNRM-----FVVFAAVKKSK 378
Query: 218 QVDDSW----------LWHRRFGHFNTQVLKLLYQKNMMRDLPS--LKESNEACERCLLG 265
+ +++ +WH+RFGH N Q L+ L +K M++ LP L E C+ CL G
Sbjct: 379 ETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKG 438
Query: 266 MQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWVYFLKAK 325
Q R S W++ VL+L+HTD+CGP+ +S RY + F DDFSR W Y L K
Sbjct: 439 KQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEK 498
Query: 326 SEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQN 385
SE F+ FK+FKA VE++SGK + LRSDRG EY SREFD++C++ GI+RQLT AY PQQN
Sbjct: 499 SETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQN 558
Query: 386 GVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCGK 445
GV+ERK R++M M R ML E + F W EAV AVYILNR P+ A+ + TP E W
Sbjct: 559 GVAERKNRSVMNMTRCMLMEMSVPRKF-WPEAVQYAVYILNRSPSKALNDITPEEKWSSW 617
Query: 446 KPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKKLTISRD 505
KPS +HLR+FGS+ Y VP KR KL++K+++ + G S +SK YR+Y+ T K+ ISRD
Sbjct: 618 KPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRD 677
Query: 506 VEVDGNASWNWDEEKVEKNILIPT-----------------QRPQEEVEEEAENPGEPT- 547
V+ D W W+++ +E+ ++ Q+ QEE EEE E E
Sbjct: 678 VQFDEERGWEWEDKSLEEELVWDNSDHEPAGEEGPEINHNGQQDQEETEEEEETVAETVH 737
Query: 548 -------SPPQQQEQQQDLSPESTPRRVRFLVDVYETCNLAIL-----EPESFEAASKQE 595
+ +Q QQ + R L+ E + L +P FE A++ E
Sbjct: 738 QNLPAVGTGGVRQRQQPVWMKDYVVGNARVLITQDEEDEVLALFIGPDDPVCFEEAAQLE 797
Query: 596 VWVKAMEEEIKMIEKNNTWELVDCPHGKDIIGVKWVYKTK 635
VW KAME EI IE+NNTWELV+ P +IG+KW++KTK
Sbjct: 798 VWRKAMEAEITSIEENNTWELVELPEEAKVIGLKWIFKTK 837
>At3g60170 putative protein
Length = 1339
Score = 456 bits (1173), Expect = e-128
Identities = 263/633 (41%), Positives = 354/633 (55%), Gaps = 43/633 (6%)
Query: 42 QCNYCKKFGHMEKYC--YSKNRHQANLAEEQEQDQYLLYATQDSARETGGSWYLDSGCSN 99
+C C GH + C + KN + A L EE+E+ + Y Q+ A W+LDSGCSN
Sbjct: 251 ECYKCHNLGHFQYECPEWEKNANYAEL-EEEEELLLMAYVEQNQANRDE-VWFLDSGCSN 308
Query: 100 HMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*KGTRLISDVLLVPNLKENL 159
HM + F +++ V+LGN + GKG+V V+ T++I +V VP L+ NL
Sbjct: 309 HMTGSKEWFSELEEGFNRTVKLGNDTRMSVVGKGSVKVKVNGVTQVIPEVYYVPELRNNL 368
Query: 160 LSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSNISFPLNFKYVAN---IAMK 216
LS+GQ+ ERG + C++Y H + I + M + + F L K N + +
Sbjct: 369 LSLGQLQERGLAILIRDGTCKVY--HPSKGAIMETNMSGNRMFFLLASKPQKNSLCLQTE 426
Query: 217 AQVD-DSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEACERCLLGMQRRVSFSTC 275
+D ++ LWH RFGH N + LKLL K M+ LP LK + E C CL G Q R S S
Sbjct: 427 EVMDKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATKEICAICLTGKQHRESMSKK 486
Query: 276 KEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWVYFLKAKSEVFRVFKKF 335
W++ L+L+H+D+CGP+ SH RY + F DDF+R TWVYFL KSE F FK F
Sbjct: 487 TSWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEKSEAFATFKIF 546
Query: 336 KALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQNGVSERKKRTI 395
KA VEK+ G + LR+DRG E+TS EF +FC GI RQLT A+ PQQNGV+ERK RTI
Sbjct: 547 KASVEKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAFTPQQNGVAERKNRTI 606
Query: 396 MEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCGKKPSTKHLRVF 455
M RSML E+ + FW +EA +V+I NR PT AV+ TP EAW G+KP ++ RVF
Sbjct: 607 MNAVRSMLSERQVPKMFW-SEATKWSVHIQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVF 665
Query: 456 GSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKKLTISRDVEVDGNASWN 515
G I Y H+PD KR KL+DK+ + +FLG S +SK +R+Y+ KK+ IS+DV D + SW+
Sbjct: 666 GCIGYVHIPDQKRSKLDDKSKKCVFLGVSEESKAWRLYDPVMKKIVISKDVVFDEDKSWD 725
Query: 516 WDEEKVE-KNILIPTQRPQEEVEEEAENPGEPTSPPQQQEQQQ--------DLSPESTP- 565
WD+ VE K + + +E E P SP SP +P
Sbjct: 726 WDQADVEAKEVTLECGDEDDEKNSEVVEPIAVASPNHVGSDNNVSSSPILAPSSPAPSPV 785
Query: 566 -------RRVRFLVDVYETC-------NLAIL--------EPESFEAASKQEVWVKAMEE 603
RR + YET NL+++ +P F+ A K ++W +AME
Sbjct: 786 AAKVTRERRPPGWMADYETGEGEEIEENLSVMLLMMMTEADPIQFDDAVKDKIWREAMEH 845
Query: 604 EIKMIEKNNTWELVDCPHGKDIIGVKWVYKTKL 636
EI+ I KNNTWEL P G IGVKWVYKTKL
Sbjct: 846 EIESIVKNNTWELTTLPKGFTPIGVKWVYKTKL 878
>At2g17490 putative retroelement pol polyprotein
Length = 822
Score = 436 bits (1121), Expect = e-122
Identities = 235/500 (47%), Positives = 315/500 (63%), Gaps = 20/500 (4%)
Query: 69 EQEQDQYLLYATQDSARETGGS-WYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVV 127
E+ + + A Q+ +GG+ W +DSGC+NHM +E +F I+ KV +R+GNGAV+
Sbjct: 7 EEVKKNLVFIARQEIKEPSGGNTWLIDSGCTNHMTPNEKLFTKINRDFKVPIRVGNGAVM 66
Query: 128 ESKGKGTVMVET*KGTRLISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDK 187
S+GKG + V T K R I DVLLVP L +NLLS+ QMI GY + + + C I+D K
Sbjct: 67 MSEGKGDIEVMTRKDKRGIRDVLLVPKLGKNLLSVPQMIINGYQVTLKNNYCTIHDSARK 126
Query: 188 RVEIAQVKMQKSNISFPLNFKYVANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMR 247
+ I +V+M N SF L + AM A+ + + LWH+R GH LK+L K M+
Sbjct: 127 K--IGEVEMV--NKSFHLRWLSNEETAMVAKDEATELWHKRLGHTGHSNLKILQSKEMVT 182
Query: 248 DLPSLKESNEACERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFI 307
LP CE C+L R F E RAK LELIH+DVCGPM+ SS + +RY +
Sbjct: 183 GLPKFNVEEGKCESCILSKHSRDPFPKESETRAKHKLELIHSDVCGPMQNSSINGSRYIL 242
Query: 308 LFTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFC 367
F DD +RM WVYFLKAKSEVF+ FKKFK LVE + IK LR DRG EY S+EF +F
Sbjct: 243 TFIDDATRMVWVYFLKAKSEVFQTFKKFKNLVENNANCRIKKLRIDRGTEYLSKEFSEFL 302
Query: 368 EDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNR 427
E GIERQLT AY PQQN VSER+ R+++EMAR+M+K K + WAEAV+ A Y NR
Sbjct: 303 EGNGIERQLTAAYSPQQNEVSERRNRSLVEMARAMIKAKDLPLKL-WAEAVHVAAYAQNR 361
Query: 428 CPTNAVQNKTPIEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKS 487
PT ++NKTP+EAW KPS H++VFGSICY H+PD KR K +DK+ R IF+GYS+++
Sbjct: 362 TPTRTLKNKTPLEAWSDSKPSVSHMKVFGSICYVHIPDEKRRKWDDKSKRAIFVGYSSQT 421
Query: 488 KGYRVYNLQTKKLTISRDVEVDGNASWNWDEEKVEKNILIPTQRPQEEVEEEAENPGEPT 547
KGYRVY L+ K+ ISRDV D ++ W+W++++V K+ ++ E E+ G+
Sbjct: 422 KGYRVYLLKENKIDISRDVIFDEDSKWDWEKKEVIKHY---------DMSREPEDRGD-- 470
Query: 548 SPPQQQEQQQDLSPESTPRR 567
QQ ++Q E+ RR
Sbjct: 471 ---QQADEQNSRDNEARGRR 487
>At3g25450 hypothetical protein
Length = 1343
Score = 369 bits (947), Expect = e-102
Identities = 220/606 (36%), Positives = 324/606 (53%), Gaps = 52/606 (8%)
Query: 76 LLYATQDSARET------GGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVES 129
++Y + + R T +WYLD+G SNHM + + F +D+ + KVR G+ + +
Sbjct: 271 VVYLNEKNIRPTELESCINNAWYLDNGASNHMTGNRAWFCKLDEMITGKVRFGDDSCINI 330
Query: 130 KGKGTVMVET*KGTR-LISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKR 188
KGKG++ + G R ++ DV +P+LK N+LS+GQ E G + D ++D+
Sbjct: 331 KGKGSIPFISKGGERKILFDVYYIPDLKSNILSLGQATESGCDIRMREDYLTLHDREGNL 390
Query: 189 VEIAQVKMQKS-NISFPLNFKYVANIAMK-AQVDDSWLWHRRFGHFNTQVLKLLYQKNMM 246
+ +K Q+S N + ++ + + ++ ++S +WH R GH + + +K + +K ++
Sbjct: 391 L----IKAQRSRNRLYKVSLEVENSKCLQLTTTNESTIWHARLGHISFETIKAMIKKELV 446
Query: 247 RDLPS-LKESNEACERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRY 305
+ S + + E C CL G Q R SF +RA VLELIH D+CGP+ S+ RY
Sbjct: 447 IGISSSVPQEKETCGSCLFGKQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRY 506
Query: 306 FILFTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDK 365
+ DD SR W LK KSE F FK+FKALVE++ G IK R+DRG E+ S EF +
Sbjct: 507 VFVLIDDHSRYMWSILLKEKSEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQE 566
Query: 366 FCEDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYIL 425
FC EGI R LT Y PQQNGV ER+ RT++ M RS+LK M N + W EAV + Y++
Sbjct: 567 FCAKEGINRHLTAPYTPQQNGVVERRNRTLLGMTRSILKHMNMPN-YLWGEAVRHSTYLI 625
Query: 426 NRCPTNAVQNKTPIEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYST 485
NR T ++ N+TP E + KKP+ +HLRVFG + Y V KL+D++ ++LG
Sbjct: 626 NRVGTRSLSNQTPYEVFKHKKPNVEHLRVFGCVSYAKVEVPNLKKLDDRSRMLVYLGTEP 685
Query: 486 KSKGYRVYNLQTKKLTISRDVEVDGNASWNWDEEKVE-----------------KNILIP 528
SK YR+ + +++ +SRDV D N SW W E E +
Sbjct: 686 GSKAYRLLDPTKRRIFVSRDVVFDENRSWMWQESSSETDKESGTFTITLSEFGNNGVTEN 745
Query: 529 TQRPQEEVEEEAENPGEPTSPPQQQEQQQDLSPESTPRRVR----------FLVDVYETC 578
+ E EEAE GE + ++ E ++ + P+ VR +L D Y C
Sbjct: 746 DISTEPEETEEAEINGEDENIIEEAETEEHDQSQEEPQPVRRSQRQVIRPNYLKD-YVLC 804
Query: 579 N--------LAIL-EPESFEAASKQEVWVKAMEEEIKMIEKNNTWELVDCPHGKDIIGVK 629
LA+ EP F+ A+K + W A +EEI+ IEKN TW LVD P G IGVK
Sbjct: 805 AEIEAEHLLLAVNDEPWDFKEANKSKEWRDACKEEIQSIEKNRTWSLVDLPVGSKAIGVK 864
Query: 630 WVYKTK 635
WV+K K
Sbjct: 865 WVFKLK 870
>At2g05960 putative retroelement pol polyprotein
Length = 1200
Score = 364 bits (934), Expect = e-100
Identities = 212/601 (35%), Positives = 320/601 (52%), Gaps = 40/601 (6%)
Query: 90 SWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*KGT-RLISD 148
+WYLD+G SNHM + F +D+ V KV+ G+ + ++ +GKG+++ T G + +++
Sbjct: 256 AWYLDNGASNHMTGNRDWFCKLDEMVTGKVKFGDDSRIDIRGKGSILFLTKNGEPKTLAN 315
Query: 149 VLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSNISFPLNFK 208
V +P+LK N++S+GQ E G + + + ++D+ D + + + + L K
Sbjct: 316 VYYIPDLKSNIISLGQATEAGCDVRLKDNYLTLHDR-DGNLLVKATRSRNRLYRVELKVK 374
Query: 209 YVANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEACERCLLGMQR 268
+ + A ++D WH R GH N + +K + K + +PS + E C C+LG Q
Sbjct: 375 NTKCLQLAA-LNDLTKWHARLGHINLETIKAMVTKEFVIGIPSAPKEKEICASCMLGKQA 433
Query: 269 RVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWVYFLKAKSEV 328
R F +RA +LELIH D+CGP+ + RY ++ DD SR W + LK KSE
Sbjct: 434 RQVFPKATTYRASQILELIHGDLCGPISPPTAAKRRYILVLIDDHSRFMWSFLLKEKSEA 493
Query: 329 FRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQNGVS 388
F FK FKA VE+++G+ IK LR+DRG E+ S+EF FCE+EGI R LT Y PQQNGV
Sbjct: 494 FGKFKTFKATVEQETGEKIKTLRTDRGGEFLSQEFQTFCEEEGIIRHLTAPYTPQQNGVV 553
Query: 389 ERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCGKKPS 448
ER+ RT++ M RS++K + N + W EA+ A Y++NR T A+ N+TP EA KKP+
Sbjct: 554 ERRNRTLLGMTRSIMKHMSVPN-YLWGEAIRHATYLINRVGTRALINQTPYEALKKKKPN 612
Query: 449 TKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKKLTISRDVEV 508
+HLRVFG + Y V KL++++ ++LG T SK Y + + T+K+ +SRDV
Sbjct: 613 VEHLRVFGCVSYAKVEFPHLRKLDERSRILVYLGTETGSKAYTLLDPTTRKIIVSRDVVF 672
Query: 509 DGNASWNW-DEEKVE----------------KNILIPTQRPQEEVEEEAENP-------- 543
D N SW W + E +E N + + +E E EAE+
Sbjct: 673 DENKSWKWANSELIEIQKEPGMFTLAQTEFHNNEEVENETSEEIEENEAEDSTNKDAEDG 732
Query: 544 -GEPTSPPQQQEQQQDLSPESTPRRVR-------FLVDVYETCNLAIL---EPESFEAAS 592
EP+ P + S + ++ L+ E L +L EP F+ A+
Sbjct: 733 LDEPSVPEPNHSDDVPVFTRSGRQVIKPAHLNDYVLLAEIEGERLLLLINDEPWDFKEAN 792
Query: 593 KQEVWVKAMEEEIKMIEKNNTWELVDCPHGKDIIGVKWVYKTKLKP*WHYTKAQGEASSE 652
K W A +EEIK I KN TW LV P G IG+KWV+K K + TK + ++
Sbjct: 793 KYREWRDACDEEIKSIIKNRTWSLVSLPVGIKPIGLKWVFKIKRNSDGNITKHKARLVAK 852
Query: 653 G 653
G
Sbjct: 853 G 853
>At1g37110
Length = 1356
Score = 343 bits (879), Expect = 4e-94
Identities = 224/668 (33%), Positives = 344/668 (50%), Gaps = 78/668 (11%)
Query: 29 GHAEADCRYRDKPQCNYCKKFGHMEKYCYSKNRHQANLAEEQEQ--DQYLLYATQDSARE 86
G + + K C YCKK GH++K CYS+ + + + + + L+++ S E
Sbjct: 242 GKGRSRSNSKTKVPCWYCKKEGHVKKDCYSRKKKMESEGQGEAGVITEKLVFSEALSVNE 301
Query: 87 --TGGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*KGT- 143
W LDSGC++HM F + + + LG+ VES+G+GT+ ++T GT
Sbjct: 302 QMVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTI 361
Query: 144 RLISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSNISF 203
+++ +V VP+L+ NL+S G + + GY H G+ Y K++K ++ SN +
Sbjct: 362 KILENVKYVPHLRRNLISTGTLDKLGYR-HEGGEGKVRYFKNNKTA----LRGSLSNGLY 416
Query: 204 PLNFKYVANIAMKAQVDD--SWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEA--C 259
L+ V + A+ D + LWH R GH + LK+L K ++ KE NE C
Sbjct: 417 VLDGSTVMSELCNAETDKVKTALWHSRLGHMSMNNLKVLAGKGLI----DRKEINELEFC 472
Query: 260 ERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCG-PMRTSSHDNNRYFILFTDDFSRMTW 318
E C++G ++VSF+ K ++D L +H D+ G P T S +YF+ DD +R W
Sbjct: 473 EHCVMGKSKKVSFNVGKH-TSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVW 531
Query: 319 VYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTV 378
+YFLK+K E F F ++K+LVE Q K +K LR+D G E+ + FD +C++ GIER T
Sbjct: 532 LYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTC 591
Query: 379 AYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTP 438
Y PQQNGV+ER RTIME R +L + G+ F WAEA TA Y++NR P +A+ + P
Sbjct: 592 TYTPQQNGVAERMNRTIMEKVRCLLNKSGVEEVF-WAEAAATAAYLINRSPASAINHNVP 650
Query: 439 IEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTK 498
E W +KP KHLR FGSI Y H + KL+ + ++G FLGY +KGY+V+ L+ +
Sbjct: 651 EEMWLNRKPGYKHLRKFGSIAYVH---QDQGKLKPRALKGFFLGYPAGTKGYKVWLLEEE 707
Query: 499 KLTISRD-------------VEVDGNASWNWDE---EKVEKNILIPTQRP----QEEVEE 538
K ISR+ V+ D + N E +VE+N Q + +
Sbjct: 708 KCVISRNVVFQESVVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDS 767
Query: 539 EAENPGEPTSPPQQQEQQQDLSPESTPRR----------------------------VRF 570
E GE +S +++ + + + E TP+R V F
Sbjct: 768 EPITEGEQSSDSEEEVEYSEKTQE-TPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTF 826
Query: 571 LVDVYETCNLAILEPESFEAASKQ---EVWVKAMEEEIKMIEKNNTWELVDCPHGKDIIG 627
+ V E C + EP+S++ A + E W A +E+ + KN TW+LVD P + IIG
Sbjct: 827 ALVVVENC--IVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIG 884
Query: 628 VKWVYKTK 635
+W++K K
Sbjct: 885 CRWLFKLK 892
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 334 bits (856), Expect = 2e-91
Identities = 212/646 (32%), Positives = 328/646 (49%), Gaps = 68/646 (10%)
Query: 36 RYRDKPQCNYCKKFGHMEKYCYSKNRHQANLAEEQEQDQ-----------YLLYATQDSA 84
R + K C C K GH C + E+Q+ ++ ++Y + S
Sbjct: 208 RDKSKVICYRCDKTGHYASECLDRLLKLIKAQEQQQNNEDDDEIESLMMHEVVYLNERSV 267
Query: 85 RE------TGGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVE 138
+ + SWYLD+G SNHM + F +++ + KVR G+ + ++ KGKG++++
Sbjct: 268 KPKEFEACSDNSWYLDNGASNHMTGNLQWFSKLNEMITGKVRFGDDSRIDIKGKGSIVLI 327
Query: 139 T*KGTR-LISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQ 197
T G R ++DV +P+LK N++S+GQ E G + + D ++D+ + + + +
Sbjct: 328 TKGGIRKTLTDVYFIPDLKSNIISLGQATEAGCDVRMKDDQLTLHDREGCLL-LRATRSR 386
Query: 198 KSNISFPLNFKYVANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNE 257
LN + V + ++A + +K ++ + ++ + E
Sbjct: 387 NRLYKVDLNVENVKCLQLEAAT--------------------MVRKELVIGISNIPKEKE 426
Query: 258 ACERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMT 317
C CLLG Q R F +RA VLEL+H D+CGP+ S+ RY ++ DD +R
Sbjct: 427 TCGSCLLGKQARQPFPKATTYRASQVLELVHGDLCGPITQSTTAKKRYILVLIDDHTRYM 486
Query: 318 WVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLT 377
W LK KSE F F+ FK VE++SG IK R+D+G E+ S+EF FC EGI R LT
Sbjct: 487 WSMLLKEKSEAFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEGINRHLT 546
Query: 378 VAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKT 437
Y PQQNGV ER+ RT++ M RS+LK M N + W EAV + YI+NR T ++QN+T
Sbjct: 547 APYTPQQNGVVERRNRTLLGMTRSILKHMKMPN-YLWGEAVRHSTYIINRVGTRSLQNQT 605
Query: 438 PIEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQT 497
P E + +KP+ +HLRVFG I Y + KL+D++ ++LG SK YR+ +
Sbjct: 606 PYEVFKQRKPNVEHLRVFGCIGYAKIEGPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPTN 665
Query: 498 KKL-----TISRDVEVDGNASWNWDE---EKVEKNILIPTQRPQEEVEEEAENPGEPTSP 549
+K+ + S ++ G S E ++++ I T++ EE E E GE
Sbjct: 666 RKIIKWNNSDSETRDISGTFSLTLGEFGNNGIQESDDIETEKNGEESENSHEEEGENEHN 725
Query: 550 PQQQEQQQDLSP-ESTP-----RRVRFL-----VDVY--------ETCNLAIL-EPESFE 589
Q+Q ++ P +TP R R + +D Y E LAI EP F+
Sbjct: 726 EQEQIDAEETQPSHATPLPTLRRSTRQVGKPNYLDDYVLMAEIEGEQVLLAINDEPWDFK 785
Query: 590 AASKQEVWVKAMEEEIKMIEKNNTWELVDCPHGKDIIGVKWVYKTK 635
A+K + W A +EEI IEKN TW L+D P + +IG+KWV+K K
Sbjct: 786 EANKLKEWRDACKEEILSIEKNKTWSLIDLPVRRKVIGLKWVFKIK 831
>At4g21360 putative transposable element
Length = 1308
Score = 328 bits (840), Expect = 1e-89
Identities = 213/675 (31%), Positives = 338/675 (49%), Gaps = 76/675 (11%)
Query: 6 ESSRNFSKNSQDKNPPCSIC*RLGHAEADCRYRDKPQCNYCKKFGHMEKYCYSKNRHQAN 65
E R +KN+Q + G + + C +CKK GH++K CY+ R N
Sbjct: 230 ERGRPQTKNTQGQ----------GKGRGRSNSKSRLTCWFCKKEGHVKKDCYAGKRKLEN 279
Query: 66 LAEEQEQ--DQYLLYATQDSA--RETGGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRL 121
+ + + L+Y+ S +E W +DSGC+ HM F +++ + L
Sbjct: 280 EGQGKAGVITEKLVYSEALSMYDQEAKDKWVIDSGCTYHMTSRMDWFSEFNENETTMILL 339
Query: 122 GNGAVVESKGKGTVMVET*KGT-RLISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCR 180
G+ VESKG GTV V T G+ R++ +V VPNL+ NL+S G + + GY H GD
Sbjct: 340 GDDHTVESKGSGTVKVNTHGGSIRVLKNVRFVPNLRRNLISTGTLDKLGYK-HEGGDGKV 398
Query: 181 IYDKHDKRVEIAQVKMQKSNISFPLNFKYVAN--IAMKAQVDDSWLWHRRFGHFNTQVLK 238
+ K +K + N + L+ V N ++ + + LWH R GH + +K
Sbjct: 399 RFYKENKTALCGNLV----NGLYVLDGHTVVNENCNVEGSNEKTELWHCRLGHMSLNNMK 454
Query: 239 LLYQKNMMRDLPSLKESNEACERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTS 298
+L +K ++ + +KE + CE C++G +++SF+ K +VL IH D+ G
Sbjct: 455 ILAEKGLL-EKKDIKELS-FCENCVMGKSKKLSFNVGKHI-TDEVLGYIHADLWG----- 506
Query: 299 SHDNNRYFILFTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEY 358
+YF+ DD SR W+ FLK K E F F ++K LVE Q K +K+LR+D G E+
Sbjct: 507 ----KQYFLSIIDDKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEF 562
Query: 359 TSREFDKFCEDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAV 418
+ +FD+FC+ GIER T Y PQQNGV++R RT+ME R +L E G+ F WAEA
Sbjct: 563 CNLKFDEFCKQNGIERHRTCTYTPQQNGVAKRMNRTLMEKVRCLLNESGLEEVF-WAEAA 621
Query: 419 YTAVYILNRCPTNAVQNKTPIEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRG 478
TA Y++NR P +AV + P E W KKP KHLR FG I Y H + + KL+ + ++G
Sbjct: 622 ATAAYLVNRSPASAVDHNVPEELWLDKKPGYKHLRRFGCIAYVH---LDQGKLKPRALKG 678
Query: 479 IFLGYSTKSKGYRVYNLQTKKLTISRDVEVDGNASWNWDEEKVEKNILIPTQRPQ----- 533
+FLGY +KGY+V+ L +K ISR++ + N + E E+++ +
Sbjct: 679 VFLGYPQGTKGYKVWLLDEEKCVISRNIVFNENQVYKDIRESSEQSVKDISDLEGYNEFQ 738
Query: 534 -----------------EEVEEEAENPGEPTSPP-------------QQQEQQQDLSPES 563
EE+++E+++ T P + +E++ P+
Sbjct: 739 VSVKEHGECSKTGGVTIEEIDQESDSENSVTQEPLIASIDLSNYQSARDRERRAPNPPQK 798
Query: 564 TPRRVRFLVDVYETCNLAILEPESFEAASKQEVWVK---AMEEEIKMIEKNNTWELVDCP 620
F + + + EP+ + A K + W+K M+EEI + KN TW++V+ P
Sbjct: 799 LADYTHFALALVMAEEIESEEPQCYHDAKKDKHWIKWNGGMKEEIDSLLKNGTWDIVEWP 858
Query: 621 HGKDIIGVKWVYKTK 635
+ +I +W++K K
Sbjct: 859 KEQKVISCRWLFKLK 873
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 321 bits (823), Expect = 1e-87
Identities = 230/701 (32%), Positives = 348/701 (48%), Gaps = 91/701 (12%)
Query: 3 RRRESSRNFSKNSQDKNPPCSIC*RLGHAEADCRYRDKPQCNYCKKFGHMEKYCY----- 57
R R +N ++ ++ KN R AD K C C K GH +K CY
Sbjct: 192 RGRPDGKNNNQGNKGKN-------RSRSKSAD----GKRVCWICGKEGHFKKQCYKWIER 240
Query: 58 SKNRHQ------ANLAEEQE--QDQYLLYATQDSARET---GGSWYLDSGCSNHMAKDES 106
+K++ Q ++LA+ E +L AT ++ T W LD+GCS HM +
Sbjct: 241 NKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLVVTDSIANEWVLDTGCSFHMTPRKD 300
Query: 107 IFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*KGTRLI-SDVLLVPNLKENLLSIGQM 165
FK+ + V++GN KG G++ + G+++I +DV +PN+ NL+S+G +
Sbjct: 301 WFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTL 360
Query: 166 IERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSNISFPLN-FKYVANIAMKAQV-DDSW 223
+RG + + +I +K QK + + L+ A+V D++
Sbjct: 361 EDRGCWFKSQDGILKIVKGCS-----TILKGQKRDTLYILDGVTEEGESHSSAEVKDETA 415
Query: 224 LWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEACERCLLGMQRRVSFSTCKEWRAKDV 283
LWH R GH + + +++L +K +R + + E CE C+ G Q RVSF+ + K+
Sbjct: 416 LWHSRLGHMSQKGMEILVKKGCLRR--EVIKELEFCEDCVYGKQHRVSFAPAQHV-TKEK 472
Query: 284 LELIHTDVCG-PMRTSSHDNNRYFILFTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQ 342
L +H+D+ G P +S N++YFI F DD+SR W+YFL+ K E F F ++K +VE Q
Sbjct: 473 LAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQ 532
Query: 343 SGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSM 402
S + +K LR+D G EY + F+KFC++EGI R T AY PQQNG++ER RTIM+ RSM
Sbjct: 533 SDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDKVRSM 592
Query: 403 LKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCGKKPSTKHLRVFGSICYTH 462
L GM F WAEA TAVY++NR P+ A+ P E W G P LR FG + Y H
Sbjct: 593 LSRSGMEKKF-WAEAASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSLRKFGCLAYIH 651
Query: 463 VPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKKLTISRDV---------EVDGNAS 513
+ KL ++ +GIF Y KGY+V+ L+ KK ISR+V ++ G++
Sbjct: 652 ---ADQGKLNPRSKKGIFTSYPEGVKGYKVWVLEDKKCVISRNVIFREQVMFKDLKGDSQ 708
Query: 514 WNWDEEKVEKNILIPTQRPQEEVE-----EEAENPGEPT--------SPPQQQEQQ---- 556
E +E + P QE + ++ NP E T SP Q+++
Sbjct: 709 NTISESDLEDLRVNPDMNDQEFTDQGGATQDNSNPSEATTSHNPVLNSPTHSQDEESEEE 768
Query: 557 -----QDLSPESTPR-RVRFLVDV---YETCNLAIL----------EPESFEAA---SKQ 594
+DLS R RVR + Y N+ EP+S++ A
Sbjct: 769 DSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFAYYSEDDGKPEPKSYQEALLDPDW 828
Query: 595 EVWVKAMEEEIKMIEKNNTWELVDCPHGKDIIGVKWVYKTK 635
E W AM+EE+ + KN+TW+LV P +IG +WV+ K
Sbjct: 829 EKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRK 869
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 318 bits (816), Expect = 8e-87
Identities = 210/673 (31%), Positives = 323/673 (47%), Gaps = 69/673 (10%)
Query: 13 KNSQDKNPPCSIC*RLGHAEADCRYRDKPQCNYCKKFGHMEKYCYSKNRHQANLAEEQEQ 72
K K P C C GH + C ++KPQ F + + + NLAE
Sbjct: 239 KGKSKKKPGCWTCGEEGHFRSSCPNQNKPQ------FKQSQVVKGESSGGKGNLAEAA-- 290
Query: 73 DQYLLYATQDSARETGGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGK 132
Y+ A + W LD+GCS HM F ++ VR+GN V +G
Sbjct: 291 GYYVSEALSSTEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGV 350
Query: 133 GTVMVET*KG-TRLISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEI 191
GT+ V+ G T ++++V +P++ NLLS+G + GY E + RI K
Sbjct: 351 GTIRVKNSDGLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRI-----KAGNQ 405
Query: 192 AQVKMQKSNISFPLNFKYVAN--IAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDL 249
+ ++ + + LN+K VA+ +A+ + DD+ LWH+R H + + +++L +K +
Sbjct: 406 VLLTGRRYDTLYLLNWKPVASESLAVVKRADDTVLWHQRLCHMSQKNMEILVRKGFLDK- 464
Query: 250 PSLKESNEACERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCG-PMRTSSHDNNRYFIL 308
S + CE C+ G +R SFS K+ LE IH+D+ G P S +YF+
Sbjct: 465 -KKVSSLDVCEDCIYGKAKRKSFSLAHH-DTKEKLEYIHSDLWGAPFVPLSLGKCQYFMS 522
Query: 309 FTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCE 368
DDF+R WVYF+K K E F F ++ LVE Q+ + +K LR+D G E+ ++ FD FCE
Sbjct: 523 IIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCE 582
Query: 369 DEGIERQLTVAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRC 428
GI R T AY PQQNGV+ER RTIME RSML + G+ FW AEA +T V ++N+
Sbjct: 583 SIGIHRHRTCAYTPQQNGVAERMNRTIMEKVRSMLSDSGLPKRFW-AEATHTTVLLINKT 641
Query: 429 PTNAVQNKTPIEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSK 488
P++A+ + P + W G P +LR +G + + H D KLE + +G+ +GY K
Sbjct: 642 PSSALNFEIPDKKWSGNPPVYSYLRRYGCVAFVHTDD---GKLEPRAKKGVLIGYPVGVK 698
Query: 489 GYRVYNLQTKKLTISRDVEVDGNA------------SWNWDEE---------KVEKNILI 527
GY+V+ L +K +SR++ NA S D++ + E++++
Sbjct: 699 GYKVWILDERKCVVSRNIIFQENAVYKDLMQRQENVSTEEDDQTGSYLEFDLEAERDVIS 758
Query: 528 PTQRPQEEVEEEAENPGEPTSPPQQQEQQQDLSPESTPRRVRFLVD-------------- 573
+ E+P T Q +D +P + D
Sbjct: 759 GGDQEMVNTIPAPESPVVSTPTTQDTNDDEDSDVNQSPLSYHLVRDRDKREIRAPRRFDD 818
Query: 574 -------VYETCNLAILEPESFEAASKQ---EVWVKAMEEEIKMIEKNNTWELVDCPHGK 623
+Y T + +EPE++ A + W AM+EEI EKNNTW +V P +
Sbjct: 819 EDYYAEALYTTEDGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQ 878
Query: 624 DIIGVKWVYKTKL 636
IIG +W++K KL
Sbjct: 879 RIIGCRWIFKYKL 891
>At3g45520 copia-like polyprotein
Length = 1363
Score = 300 bits (769), Expect = 2e-81
Identities = 208/689 (30%), Positives = 332/689 (47%), Gaps = 75/689 (10%)
Query: 3 RRRESSRNFSKNSQDKNPP-CSIC*RLGHAEADCRYRDKPQCNYCKKFGHMEKYCYSKNR 61
R + + K S+ K+ C IC GH ++ C ++KPQ F + +
Sbjct: 228 RSEQKDKGKGKRSKSKSKRGCWICGEDGHLKSTCPNKNKPQ------FKNQGSNKGESSG 281
Query: 62 HQANLAE-----EQEQDQYLLYATQDSARETGGSWYLDSGCSNHMAKDESIFKNIDDSVK 116
+ NL E + ++ A + W +D+GC HM ++ D+
Sbjct: 282 GKGNLVEGSVNFVESAGMFVSEALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAG 341
Query: 117 VKVRLGNGAVVESKGKGTVMVET*KG-TRLISDVLLVPNLKENLLSIGQMIERGYTLHFE 175
VR+GN ++ KG GTV + G T + +V +P++ NLLS+G + G+ E
Sbjct: 342 GSVRMGNKSISRVKGVGTVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESE 401
Query: 176 GDVCRIYDKHDKRVEIAQVKMQKSNISFPLNFKYVA--NIAMKAQVDDSWLWHRRFGHFN 233
+ RI + +E ++ + + L+ K ++A+ DD+ LWHRR H +
Sbjct: 402 NGMLRIKSGNQVLLE-----GRRYDTLYILHGKPATDESLAVARANDDTVLWHRRLCHMS 456
Query: 234 TQVLKLLYQKNMMRDLPSLKESN-EACERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVC 292
+ + LL +K L K S + CE C+ G +++ F+ + K LE +H+D+
Sbjct: 457 QKNMSLLIKKGF---LDKKKVSMLDTCEDCIYGRAKKIGFNLAQH-DTKKKLEYVHSDLW 512
Query: 293 G-PMRTSSHDNNRYFILFTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLR 351
G P S N +YFI F DD++R WVYFLK K E F F + +LVE QSG+ +K LR
Sbjct: 513 GAPTVPMSLGNCQYFISFIDDYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGERVKTLR 572
Query: 352 SDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNT 411
+D G E+ +R FD FCE++G +R T AY PQQNGV ER RTIME RSML + G+
Sbjct: 573 TDNGLEFCNRMFDGFCEEKGFQRHRTCAYTPQQNGVVERMNRTIMEKVRSMLCDSGLPKR 632
Query: 412 FWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKL 471
F WAEA +TAV ++N+ P +A+ + P + W GK P +LR +G + + H KL
Sbjct: 633 F-WAEATHTAVLLINKTPCSAINFEFPDKRWSGKAPIYSYLRRYGCVTFVHTDG---GKL 688
Query: 472 EDKNVRGIFLGYSTKSKGYRVYNLQTKKLTISRDVEVDGNASW----------NWDEE-- 519
+ +G+ +GY + KGY+V+ ++ KK +SR+V NA + + +E+
Sbjct: 689 NLRAKKGVLIGYPSGVKGYKVWLIEEKKCVVSRNVSFQENAVYKDLMQRKEQVSCEEDDH 748
Query: 520 ---------KVEKNILIPTQRPQEEVEEEAENPGEPTSPPQQQEQQQDLSPESTP----- 565
+ +K+ ++ Q +V T P + + ++ +P
Sbjct: 749 AGSYIDLDLEADKDNSSGGEQSQAQVTPATRGAVTSTPPRYETDDIEETDVHQSPLSYHL 808
Query: 566 ------RRVR----------FLVDVYETCNLAILEPESFEAASKQEVWVK---AMEEEIK 606
R +R + +Y T + +EP ++ A + E W K AM EEI+
Sbjct: 809 VRDRERREIRAPRRFDDEDYYAEALYTTEDGDAVEPADYKEAVRDENWDKWRLAMNEEIE 868
Query: 607 MIEKNNTWELVDCPHGKDIIGVKWVYKTK 635
KN+TW V P + IIG +W+YK K
Sbjct: 869 SQLKNDTWTTVTRPEKQRIIGSRWIYKYK 897
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 297 bits (761), Expect = 2e-80
Identities = 202/658 (30%), Positives = 314/658 (47%), Gaps = 97/658 (14%)
Query: 43 CNYCKKFGHMEKYCYS-KNRHQANLAEEQEQDQYLLYATQDSA------------RETGG 89
C C K GH +K CY K R++ E+ + + D+A T
Sbjct: 251 CWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALVVSRALLGFAEVTPD 310
Query: 90 SWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*KG-TRLISD 148
+W LD+GCS HM + + ++ KVR+GN E KG G V ++ G T L++D
Sbjct: 311 TWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNEDGSTILLTD 370
Query: 149 VLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSNISFPLNFK 208
V +P + +NL+S+G + ++G + + I+ K+D V + ++S + F
Sbjct: 371 VRYIPEMSKNLISLGTLEDKGCWFESKKGILTIF-KNDLTVLTGK---KESTLYFLQGTT 426
Query: 209 YV--ANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEACERCLLGM 266
AN+ K + D++ LWH R GH + L++L K L
Sbjct: 427 LAGEANVIDKEK-DETSLWHSRLGHIGAKGLQVLVSKGH------------------LDK 467
Query: 267 QRRVSFSTCKEWRAKDVLELIHTDVCGPMRTS-SHDNNRYFILFTDDFSRMTWVYFLKAK 325
+SF K KD L+ +H+D+ G S +YFI F DDF+R TW+YF++ K
Sbjct: 468 NIMISFGAAKHV-TKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFIRTK 526
Query: 326 SEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQN 385
E F F ++K +E Q K +K+L +D G E+ ++EFD FC EG+ R T AY PQQN
Sbjct: 527 DEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQN 586
Query: 386 GVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCGK 445
GV+ER RTIM R ML E G+ F WAEA TAV+++N+ P+++++ P E W G
Sbjct: 587 GVAERMNRTIMNKVRCMLSESGLGKQF-WAEAASTAVFLINKSPSSSIEFDIPEEKWTGH 645
Query: 446 KPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKKLTISRD 505
P K L+ FGS+ Y H + KL + +GIFLGY K ++V+ L+ +K +SRD
Sbjct: 646 PPDYKILKKFGSVAYIH---SDQGKLNPRAKKGIFLGYPDGVKRFKVWLLEDRKCVVSRD 702
Query: 506 VEVDGNASWNWDEEKVEKNILIPTQRPQEEVE------------EEAENPGEPTSPPQQQ 553
+ N + ++++KN + + EVE +E ++ G S +Q
Sbjct: 703 IVFQENQMY----KELQKNDMSEEDKQLTEVERTLIELKNLSADDENQSEGGDNSNQEQA 758
Query: 554 EQQQDLSPESTPRRVRFLVDVYETCNLA-------------------------------- 581
+ S + D E LA
Sbjct: 759 STTRSASKDKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDG 818
Query: 582 -ILEPESFEAASKQ---EVWVKAMEEEIKMIEKNNTWELVDCPHGKDIIGVKWVYKTK 635
+ EPE++E A + E W +A EE+ ++KN+TW+++D P GK +IG KW++K K
Sbjct: 819 EVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRK 876
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 296 bits (757), Expect = 5e-80
Identities = 192/596 (32%), Positives = 304/596 (50%), Gaps = 64/596 (10%)
Query: 91 WYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*KGTRL-ISDV 149
W +D+GCS HM F+++++ VR+GN V + +G GT+ V+ G + +++V
Sbjct: 287 WVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTNV 346
Query: 150 LLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSNISFPLNFKY 209
+P + NLLS+G + GY+ E I + + +++ + L ++
Sbjct: 347 RYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAG-----DSVLLTVRRCYTLYLLQWRP 401
Query: 210 VA--NIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESN-EACERCLLGM 266
V ++++ + DD+ LWHRR GH + + + LL +K + L K S E CE C+ G
Sbjct: 402 VTEESLSVVKRQDDTILWHRRLGHMSQKNMDLLLKKGL---LDKKKVSKLETCEDCIYGK 458
Query: 267 QRRVSFSTCKEWRAKDVLELIHTDVCG-PMRTSSHDNNRYFILFTDDFSRMTWVYFLKAK 325
+R+ F+ + ++ LE +H+D+ G P S +YFI F DD++R +YFLK K
Sbjct: 459 AKRIGFNLAQH-DTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTK 517
Query: 326 SEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQN 385
E F F ++ LVE Q+ K IK LR+D G E+ +R FD+FC +GI T AY PQQN
Sbjct: 518 DEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQN 577
Query: 386 GVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCGK 445
GV+ER RT+ME RSML + G+ F WAEA +T ++N+ P++A+ + P + W GK
Sbjct: 578 GVAERMNRTLMEKVRSMLSDSGLPKKF-WAEATHTTAILINKTPSSALNYEVPDKRWSGK 636
Query: 446 KPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKKLTISRD 505
P +LR FG I + H D KL + +GI +GY KGY+++ L+ KK +SR+
Sbjct: 637 SPIYSYLRRFGCIAFVHTDD---GKLNPRAKKGILVGYPIGVKGYKIWLLEEKKCVVSRN 693
Query: 506 VEVDGNASW---------NWDEEKVEKNILIPTQRPQEEVEE--------EAENPGEPTS 548
V NAS+ DE + + + EEV EA++P P S
Sbjct: 694 VIFQENASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQSPFNP-S 752
Query: 549 PPQQQEQQQDLSPES----TPRRVRFLVD---------------------VYETCNLAIL 583
P Q + ++ E+ +P + + D +Y T + +
Sbjct: 753 PATTQTYSEGVNSETDIIQSPLSYQLVRDRDRRTIRAPVRFDDEDYLAEALYTTEDSGEI 812
Query: 584 EPESFEAASKQEVWVK---AMEEEIKMIEKNNTWELVDCPHGKDIIGVKWVYKTKL 636
EP + A + W K AM EE++ KN+TW +V P + +IG +W+YK KL
Sbjct: 813 EPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFKL 868
>At4g10460 putative retrotransposon
Length = 1230
Score = 274 bits (701), Expect = 2e-73
Identities = 190/621 (30%), Positives = 302/621 (48%), Gaps = 106/621 (17%)
Query: 43 CNYCKKFGHMEKYCYSKNRHQANLAEEQEQDQ-----------------YLLYATQDSAR 85
C C + GH + C +K + Q N ++Q Y+ A +
Sbjct: 248 CWICGEEGHFKTSCPNKGKQQ-NKGKDQASGSKGEAATIKGNTSEGSGYYVSEALHSTDV 306
Query: 86 ETGGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*KGTRL 145
G W +D+GC+ HM + F+ + + VR+GN + + + K
Sbjct: 307 NLGNEWVMDTGCNYHMTHKKEWFEELSEDAGGTVRMGNKSTSKFRVK------------- 353
Query: 146 ISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYD---------KHDKRVEIAQVKM 196
+P++ NLLS+G + E GY+ + V + + +H+K + + Q K
Sbjct: 354 -----YIPDMDRNLLSMGTLEEHGYSFESKNGVLVVKEGTRTLLIGSRHEK-LYLLQGKP 407
Query: 197 QKSNISFPLNFKYVANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESN 256
+ S+ ++ ++ + DD+ LWHRR GH + + + +L +K L K S
Sbjct: 408 EVSH-----------SMTVERRNDDTVLWHRRLGHISQKNMDILVKKGY---LDGKKVSK 453
Query: 257 -EACERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCG-PMRTSSHDNNRYFILFTDDFS 314
E CE C+ G RR+SF +D L +H+D+ G P S +YFI F D +S
Sbjct: 454 LELCEDCIYGKARRLSFVVATH-NTEDKLNYVHSDLWGAPSVPLSLGKCQYFISFIDVYS 512
Query: 315 RMTWVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIER 374
R TWVYFLK K E F F ++ +VE Q+G+ IK+LR D G E+ +++F+ FC+++GI R
Sbjct: 513 RKTWVYFLKHKDEAFGTFAEWSVMVENQTGRKIKILRIDNGLEFCNQQFNDFCKEKGIVR 572
Query: 375 QLTVAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQ 434
T AY PQQNGV+ER TIME R ML G+ TF WAEA T V ++N+ P++AV
Sbjct: 573 HQTCAYTPQQNGVAERMNHTIMEKVRRMLSYSGLPKTF-WAEATNTVVTLINKTPSSAVN 631
Query: 435 NKTPIEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYN 494
+ + W GK P +L+ FG + +T+ + KL + +G+FLGY + KGY+V+
Sbjct: 632 FEISDKRWSGKSPVYNYLKRFGCVAFTYADE---GKLVPRAKKGVFLGYLSGEKGYKVWL 688
Query: 495 LQTKKLTISRDVEVDGNASWNWDEEKVEKNILIPTQRPQEEVEEEAENPGEPTSPPQQQE 554
L+ +K ++SR+V NA + + ++KN + EEV+ + E +P
Sbjct: 689 LEERKCSVSRNVTFQENAVY---RDVMQKN------KDSEEVDTSSRVRREIRAPK---- 735
Query: 555 QQQDLSPESTPRRVRFLVDVYETCNLAILEPESFEAASKQEVWVKAMEEEIKMIEKNNTW 614
RF V+ Y + E ESF +E + + KN+TW
Sbjct: 736 --------------RFDVEGYYS-EFTDDEEESFN-----------VEALMDSLLKNHTW 769
Query: 615 ELVDCPHGKDIIGVKWVYKTK 635
+V P G+ +IG KW++K K
Sbjct: 770 TVVKKPVGERVIGCKWIFKRK 790
>At2g10610 pseudogene
Length = 531
Score = 273 bits (699), Expect = 3e-73
Identities = 149/368 (40%), Positives = 209/368 (56%), Gaps = 14/368 (3%)
Query: 91 WYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*KGT-RLISDV 149
WYLD+G SNHM D F +D S+ K+R G+ + ++ KGKGT+ G R++ DV
Sbjct: 172 WYLDNGASNHMTGDRRYFDKMDHSITGKIRFGDDSRIDIKGKGTIAFIDLNGKPRVMLDV 231
Query: 150 LLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSNISFPLNFKY 209
+P LK N++S+GQ E G + + ++D+ K + VK ++S S +K
Sbjct: 232 YFIPELKSNIISLGQATESGCEIKLKDGYLTMHDQEGKLL----VKAERSRNSL---YKV 284
Query: 210 VANIAMKA-----QVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEACERCLL 264
+ +A S LWH R GH + LK + K +++ PSL +E C CLL
Sbjct: 285 KMGLRKEACLYLTSTSMSSLWHARMGHVSLITLKSMIDKELIQGAPSLVIESEVCGSCLL 344
Query: 265 GMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWVYFLKA 324
G Q R SF +RA LELIH D+CGP+ + NRY + DD+SR W LK
Sbjct: 345 GKQTRQSFPQATVFRATKKLELIHGDLCGPITPKTSVGNRYIFVLIDDYSRYMWTVLLKE 404
Query: 325 KSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQ 384
K + F FK FKALVEK+SG+ I+ +DRG E+ S EF+ FCE GI R LT Y PQQ
Sbjct: 405 KGDAFFKFKNFKALVEKESGEKIQTFITDRGGEFVSGEFNSFCERTGIRRHLTAPYTPQQ 464
Query: 385 NGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCG 444
NG ER+ RT++EMARS+LK M N + W EA+ + Y++NR T A++++TP E +
Sbjct: 465 NGEVERRDRTLLEMARSILKHMHMPN-YLWGEAIRHSTYLINRVATRALKDRTPYECFRE 523
Query: 445 KKPSTKHL 452
KKP H+
Sbjct: 524 KKPIVDHI 531
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.331 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,133,850
Number of Sequences: 26719
Number of extensions: 988364
Number of successful extensions: 4398
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 3709
Number of HSP's gapped (non-prelim): 343
length of query: 1070
length of database: 11,318,596
effective HSP length: 110
effective length of query: 960
effective length of database: 8,379,506
effective search space: 8044325760
effective search space used: 8044325760
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0192.15