BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0162a.12
         (34 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g23100 10kd chaperonin like protein                                 52  8e-08
At1g14980 mitochondrial chaperonin 10                                  51  1e-07
At5g20720 chloroplast Cpn21 protein                                    33  0.037

>At1g23100 10kd chaperonin like protein
          Length = 97

 Score = 51.6 bits (122), Expect = 8e-08
 Identities = 22/33 (66%), Positives = 28/33 (84%)

Query: 1  GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
          GD VLLP +GG+Q+KL +KEFLL+RDEDI+  L
Sbjct: 63 GDNVLLPEFGGTQVKLGEKEFLLYRDEDIMATL 95


>At1g14980 mitochondrial chaperonin 10
          Length = 98

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 1  GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
          GD VLLP YGG+Q+KL + E+ LFRDED+LG L
Sbjct: 63 GDTVLLPEYGGTQVKLGENEYHLFRDEDVLGTL 95


>At5g20720 chloroplast Cpn21 protein
          Length = 253

 Score = 32.7 bits (73), Expect = 0.037
 Identities = 11/33 (33%), Positives = 24/33 (72%)

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           G Q++   Y G++++ +D + L+ +++DI+GIL
Sbjct: 120 GAQIIYSKYAGTEVEFNDVKHLILKEDDIVGIL 152


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.322    0.154    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 814,890
Number of Sequences: 26719
Number of extensions: 17731
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 3
length of query: 34
length of database: 11,318,596
effective HSP length: 10
effective length of query: 24
effective length of database: 11,051,406
effective search space: 265233744
effective search space used: 265233744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)