BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0129.4
(1259 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45230 putative non-LTR retroelement reverse transcriptase 640 0.0
At2g01840 putative non-LTR retroelement reverse transcriptase 601 e-172
At1g47910 reverse transcriptase, putative 585 e-167
At2g31520 putative non-LTR retroelement reverse transcriptase 578 e-165
At2g25550 putative non-LTR retroelement reverse transcriptase 575 e-164
At4g09710 RNA-directed DNA polymerase -like protein 563 e-160
At2g17910 putative non-LTR retroelement reverse transcriptase 558 e-159
At1g24640 hypothetical protein 534 e-151
At2g05200 putative non-LTR retroelement reverse transcriptase 533 e-151
At3g31420 hypothetical protein 507 e-143
At2g16680 putative non-LTR retroelement reverse transcriptase 497 e-140
At2g31080 putative non-LTR retroelement reverse transcriptase 483 e-136
At2g41580 putative non-LTR retroelement reverse transcriptase 470 e-132
At3g32110 non-LTR reverse transcriptase, putative 461 e-129
At4g10830 putative protein 457 e-128
At3g45550 putative protein 446 e-125
At2g11240 pseudogene 435 e-122
At4g15590 reverse transcriptase like protein 403 e-112
At2g17610 putative non-LTR retroelement reverse transcriptase 367 e-101
At2g07650 putative non-LTR retrolelement reverse transcriptase 332 6e-91
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 640 bits (1652), Expect = 0.0
Identities = 407/1271 (32%), Positives = 651/1271 (51%), Gaps = 78/1271 (6%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
+YG P + W + R PW+ GDFN+++ P++K+GG
Sbjct: 104 IYGEPVQAERGELWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQM 163
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
+ C L V+ +G +F+W NR V+ RLD + N AW L+P K ++ + CSDH
Sbjct: 164 LNSCGLWEVNHSGYQFSWYGNR-NDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDH 222
Query: 124 SPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTE----VPDRLSD 179
SP++ RK + F++++ W+Q+ E K+++ W + T+ + ++++
Sbjct: 223 SPLINNLVGDNWRKWAG----FKYDKRWVQR-EGFKDLLCNFWSQQSTKTNALMMEKIAS 277
Query: 180 VSGLLGRWGKEQFGDLPRKISDGQAL--LQELQRK--DQTKEVLM---AINVAERDLDSL 232
+ +W +++S + +QELQ K TK++ + +++L
Sbjct: 278 CRREISKW---------KRVSKPSSAVRIQELQFKLDAATKQIPFDRRELARLKKELSQE 328
Query: 233 LEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARV 292
EE +W+++SR W+++GD+NT++FH RR +N I+ L D+ GRE D D+ RV
Sbjct: 329 YNNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRV 388
Query: 293 LGDYFGGLFTSSNP----EGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTK 348
YF LF S + E +E T LV+ +++ L P T+EEV+ A F ++P K
Sbjct: 389 AEAYFKKLFASEDVGYTVEELENLTPLVSDQMNNNLLA----PITKEEVQRATFSINPHK 444
Query: 349 APGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQ-GVIPPGMINQTLLVLIPKIMKPEHATQ 407
PG DG YQ++W+ +GD ++ + G I GM N+T + LIPKI+K E T
Sbjct: 445 CPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIEEGM-NKTNICLIPKILKAEKMTD 503
Query: 408 FRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKR 467
FRPISLCNV++K+I K +ANRLK ILP +I +TQ+AFV GRLI DN L+ +E H +
Sbjct: 504 FRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSN 563
Query: 468 ISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTE-- 525
+ +K D+SKAYDRVEW FL+ ++ +GF W+ LIM + + + +
Sbjct: 564 NKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTP 623
Query: 526 ----IPSRVLLLLEAYVRVILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISH 581
IPSR L + L +F+ E ++L + + G+KVA AP ISH
Sbjct: 624 HGEIIPSRGLRQGDP-----LSPYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISH 678
Query: 582 LLFADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQL 641
LLFADDS+ + + N + ++ I+ Y ASGQ +N KS + +++ + +K+
Sbjct: 679 LLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRK 738
Query: 642 LNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQ 701
L + YLGLP K +++KDR+ KK+ GW+ + LS G+E+L+K+V
Sbjct: 739 LGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAM 798
Query: 702 AIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDF 761
A+P+Y MSCF +P ++C IE +++ F+W + RGL W +W L+R K GGLGF++
Sbjct: 799 ALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEI 858
Query: 762 KSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIF 821
++FNIAL+ K WR+ T+ ++L+A+VFK YF++ D L A G RPS+AW SI ++ +
Sbjct: 859 EAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLI 918
Query: 822 QEGGRWKIGDGSQVDILHDQWL----PQGVPVIGSQDLMAEFGVSK---VSHLIDHAAKS 874
++G R IG+G +++ D W+ + + L++++ + V L+ +
Sbjct: 919 KQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRD 978
Query: 875 WKYALVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACS 934
W + LV +F T +IL + + D W + G+Y KSGY +V + +
Sbjct: 979 WNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGY-WVMTEIINQRN 1037
Query: 935 STYS--QPSLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCA 992
+ QPSL P++++ W+ P+ WR V++ L + + L R + + C C
Sbjct: 1038 NPQEVLQPSLD-PIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCP 1096
Query: 993 NEEETVFHLFVSCPVAQNFWFGSPLSLRVHG------FSSMEDFLA---DFFRAADDDAL 1043
+ ETV HL CP A+ W SPL G F +M L+ +D AL
Sbjct: 1097 SHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHAL 1156
Query: 1044 ALWQAGVYALWEMRNRVVFRDGEIPVPVAAMIQRCSMLA----AAPVSEMTVVPRPAPLL 1099
W ++ LW+ RN +VF+ E P + M A P ++T R +
Sbjct: 1157 IPWI--LWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEPQPQVTSSTRDRCV- 1213
Query: 1100 QATWARPPYGIYKLNFDAAVA-TTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEAL 1158
W P +G K N D A + G G G ++RN G +L + L S + E
Sbjct: 1214 --KWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVE 1271
Query: 1159 VFRWSMQLTIQMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSIVGDCFMLSRFFDYVDLS 1218
RW++ + +RRV+FE+D L L + D S L+ + D L R F+ V
Sbjct: 1272 ALRWAVLSLSRFNYRRVIFESDSQYLVSLIQNEMDIPS-LAPRIQDIRNLLRHFEEVKFQ 1330
Query: 1219 FVRRRGNSVAD 1229
F RR GN+VAD
Sbjct: 1331 FTRREGNNVAD 1341
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 601 bits (1550), Expect = e-172
Identities = 387/1280 (30%), Positives = 618/1280 (48%), Gaps = 79/1280 (6%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
+YG P +H W ++R PW+ GDFN+IL+ +K GG +G +Q T
Sbjct: 466 IYGHPIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNM 525
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
+ C + + G ++W R T+E LD +N W++ +P+ + + SDH
Sbjct: 526 INCCNMKDLKSKGNPYSWVGKRQNE-TIESCLDRVFINSDWQASFPAFETEFLPIAGSDH 584
Query: 124 SPILL-----MCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTEVP---- 174
+P+++ +C R + + +R + F E+ + + W R ++
Sbjct: 585 APVIIDIAEEVCTKRGQFRYDRRHFQF----------EDFVDSVQRGWNRGRSDSHGGYY 634
Query: 175 DRLSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLE 234
++L L +W + + KI + + +R D T + + + DL+
Sbjct: 635 EKLHCCRQELAKWKRRTKTNTAEKIETLKYRVDAAER-DHTLPHQTILRLRQ-DLNQAYR 692
Query: 235 QEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLG 294
EE++W +SR W+ GD+NT FF+ R+ RN I+ + D G E D I +V
Sbjct: 693 DEELYWHLKSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAE 752
Query: 295 DYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDG 354
+YF LFT++ EE + +A +V+E L + T +EV +A+F + +APG DG
Sbjct: 753 NYFADLFTTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDG 812
Query: 355 FPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLC 414
F FY WD+IG+DV + + INQT + LIPKI+ P+H + +RPISLC
Sbjct: 813 FTAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLC 872
Query: 415 NVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGM 474
+KII+K + RLK L D+I +Q+AFVPG+ I DN LV +E H +K R ++G
Sbjct: 873 TASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGY 932
Query: 475 MTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLL 534
+ +K D+SKAYDRVEW+FL+ V+ ++GF P WV IM+ C+T + VL+
Sbjct: 933 VAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMT---------CVTSVSYEVLING 983
Query: 535 EAYVRVI----------LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLF 584
Y ++ L +FL E S +L ++ +HG+K+ ISHLLF
Sbjct: 984 SPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLF 1043
Query: 585 ADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNV 644
ADDS+ F RA+ Q E + I YE ASGQ IN KS + + +P L +LL +
Sbjct: 1044 ADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGI 1103
Query: 645 NAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIP 704
+ V KYLGLP +G+ K +F ++ +V ++ +GW + LS AG+E++IK++ A+P
Sbjct: 1104 DNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALP 1163
Query: 705 SYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSF 764
Y M+CF+LP +C +I +++ F+WG + +G LGF+D F
Sbjct: 1164 VYSMNCFLLPTLICNEINSLITAFWWG------------------KENEGDLGFKDLHQF 1205
Query: 765 NIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEG 824
N AL+AK WRI T P++LLA+++KG+Y+ L A +G SY W+SI + + Q+G
Sbjct: 1206 NRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQG 1265
Query: 825 GRWKIGDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDFIF 884
R ++GDG I D WLP P ++ E KV+ L + W + + +
Sbjct: 1266 LRVRLGDGQTTKIWEDPWLPTLPPRPARGPILDE--DMKVADLWRENKREWDPVIFEGVL 1323
Query: 885 HPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPA 944
+P ++L + D+ W T + Y +SGY +V + +
Sbjct: 1324 NPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGY-WVATHVNLTEEEIINPLEGDV 1382
Query: 945 PLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVS 1004
PL ++ WR P+ K WR +S L L R + DP C C N +ET+ H+ +
Sbjct: 1383 PLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFT 1442
Query: 1005 CPVAQNFWFGSPL--SLRVHGFSSMEDFLADFFRAADDDALALWQA-----GVYALWEMR 1057
C AQ W + S R+ ++E+ + + + L + ++ LW+ R
Sbjct: 1443 CSYAQVVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMPFWIMWRLWKSR 1502
Query: 1058 NRVVFRD-GEIPVPVAAMIQR------CSMLAAAPVSEMTVVPRPAPLLQA-TWARPPYG 1109
N +F+ P VA ++ +M+ +S T PL ++ W+ PP G
Sbjct: 1503 NEYLFQQLDRFPWKVAQKAEQEATEWVETMVNDTAISHNTAQSNDRPLSRSKQWSSPPEG 1562
Query: 1110 IYKLNFDAA-VATTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLTI 1168
K NFD+ V G I+R+ G VL S L + SA+ EAL F ++Q+
Sbjct: 1563 FLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKLQQSYSALQAEALGFLHALQMVW 1622
Query: 1169 QMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSIVGDCFMLSRFFDYVDLSFVRRRGNSVA 1228
+ V FE D L+L L K D L +++ D + + +V R N A
Sbjct: 1623 IRGYCYVWFEGDNLELTNLINKTED-HHLLETLLYDIRFWMTKLPFSSIGYVNRERNLAA 1681
Query: 1229 DFLAGTASKYTDMVWLEEVP 1248
D L A+ + + VP
Sbjct: 1682 DKLTKYANSMSSLYETFHVP 1701
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 585 bits (1509), Expect = e-167
Identities = 383/1177 (32%), Positives = 581/1177 (48%), Gaps = 88/1177 (7%)
Query: 121 SDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETW----GRSLTEVPDR 176
SDHSP++ AD+ R + FRF++ W+ K + E I++ W G + ++
Sbjct: 4 SDHSPVIATIADKIPRGKQN----FRFDKRWIGK-DGLLEAISQGWNLDSGFREGQFVEK 58
Query: 177 LSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKD-----QTKEVLMAINVAERDLDS 231
L++ + +W K + I D +A L QR D + E+ + + A RD
Sbjct: 59 LTNCRRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSREEITELTLRLKEAYRD--- 115
Query: 232 LLEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIAR 291
EE +W Q+SR+ W+K GD N++FFH QRR RN I L D+NG +D DI
Sbjct: 116 ----EEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQN 171
Query: 292 VLGDYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPG 351
+ YF LFT++NP+ +E V +++ +L T EV ALF +HP KAPG
Sbjct: 172 IAVSYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPG 231
Query: 352 LDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPI 411
DG LF+QK W II D+ + LQ + +N T + LIPK +P T+ RPI
Sbjct: 232 PDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPI 291
Query: 412 SLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGR 471
SLCNV +K+I+K + RLK +LP++I +TQSAFV GRLI DN L+ E FH ++ S +
Sbjct: 292 SLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCK 351
Query: 472 NGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVL 531
+ M +K DMSKAYD+VEW+F++ +L+KMGF W+S IM + + + + P + L
Sbjct: 352 DKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQP-KGL 410
Query: 532 LLLEAYVRV--ILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSI 589
++ E +R L +F+ E + ++ ++ GIKVA +P +SHLLFADDS+
Sbjct: 411 IIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSL 470
Query: 590 IFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVES 649
F +AN ++ +L IL YE SGQ IN KS + V + ++K +L ++ +
Sbjct: 471 FFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGG 530
Query: 650 FDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMS 709
YLGLP +G KT++F+FV+DR+ ++ GW LS+ G+EV+IKSV +P YVMS
Sbjct: 531 MGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMS 590
Query: 710 CFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALV 769
CF LP ++ + + V++F+W + D RG+ W +W KL SK DGGLGFR+ FN AL+
Sbjct: 591 CFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALL 650
Query: 770 AKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKI 829
AK WR+ T P++L A+VFKG YF + + L + + Y PSY W S++ + + +G ++
Sbjct: 651 AKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRV 710
Query: 830 GDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVS------KVSHLIDHAAKSWKYALVDFI 883
G G+ + + +D W+P P A++G S KV LID + W L+ +
Sbjct: 711 GSGASISVWNDPWIPAQFP------RPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKEL 764
Query: 884 FHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLP 943
F P V I + + DTL W T GNY KSGY R + +T P L
Sbjct: 765 FDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNE--GTTLIGPDL- 821
Query: 944 APLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFV 1003
L W+ P+ + W+++S +P+ L +RG+ D C C EE++ H
Sbjct: 822 TTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLF 881
Query: 1004 SCPVAQNFWFGSPLSLRVHGFSSMEDFL---ADFFRAADDDALALWQAGVYALWEMRNRV 1060
C A+ W S + F S F F+R A + ++ +W+ RN
Sbjct: 882 QCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPYPWIIWYIWKARNEK 941
Query: 1061 VFRDGE--------IPVPVAAMIQRC---------------SMLAAAPVSEMTVVPRPAP 1097
VF + + + V A Q S + VS+ T
Sbjct: 942 VFENVDKDPMEILLLAVKEAQSWQEAQVELHSERHGSLSIDSRIRVRDVSQDTTFSGFRC 1001
Query: 1098 LLQATWARPPYGIYKLNFDAAVATTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEA 1157
+ +W A+ G G + LGE A + + S + E
Sbjct: 1002 FIDGSWK---------------ASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEM 1046
Query: 1158 LVFRWSMQLTIQMEFRRVLFETDCLQLFQLWKKP---PDGRSYLSSIVGDCFMLSRFFDY 1214
W+M+ I + + V F TDC L ++ P P YL + D + F
Sbjct: 1047 EALLWAMKCMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVYLEELQSDREEFTNF--- 1103
Query: 1215 VDLSFVRRRGNSVADFLAGTASKYTDMV-WLEEVPRE 1250
LS + R N AD LA V ++ +PR+
Sbjct: 1104 -SLSLISRSANVKADKLARKIRTVPHHVTYVNNIPRD 1139
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 578 bits (1490), Expect = e-165
Identities = 383/1270 (30%), Positives = 607/1270 (47%), Gaps = 60/1270 (4%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
VYG P +H+ W + + WL +GDFN+ILS A+K+GG + + +
Sbjct: 259 VYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNM 318
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
S C + + G RF+W R TV+ LD +N AW + +P + + SDH
Sbjct: 319 VSHCDIEDMRSKGDRFSWVGER-HTHTVKCCLDRVFINSAWTATFPYAETEFLDFTGSDH 377
Query: 124 SPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSL----TEVPDRLSD 179
P+L+ + R R +FRF+ + K ++ +W + T + +R+S
Sbjct: 378 KPVLVHFNESFPR----RSKLFRFDNRLIDI-PTFKRIVQTSWRTNRNSRSTPITERISS 432
Query: 180 VSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEV-LMAINVAERDLDSLLEQEEV 238
+ R + ++I Q+ L + T+ V I + L EE+
Sbjct: 433 CRQAMARLKHASNLNSEQRIKKLQSSLNRAM--ESTRRVDRQLIPQLQESLAKAFSDEEI 490
Query: 239 WWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFG 298
+WKQ+SR W+K GD+NT +FH R +N + + DD GR D +I D+F
Sbjct: 491 YWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFT 550
Query: 299 GLFTSSNPEGIEETTNLVAGRVSETHLTV---LGEPFTREEVEEALFQMHPTKAPGLDGF 355
+F+++ GI+ + A S TV L + F+ E+ +A+ Q+ KAPG DG
Sbjct: 551 NIFSTN---GIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGL 607
Query: 356 PTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCN 415
FY+ WDI+G DV + + IN T + +IPKI P + +RPI+LCN
Sbjct: 608 TARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCN 667
Query: 416 VLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMM 475
VL+K+I+K + NRLK L I+ +Q+AF+PGR+I DN ++ +E H +K R M
Sbjct: 668 VLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYM 727
Query: 476 TLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLE 535
+K D+SKAYDRVEW FL+ ++ GF W+ IM+ + + + + P +
Sbjct: 728 AVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTR 787
Query: 536 AYVRVI-LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARA 594
+ L +F+ + S L+ L G+++ N AP I+HL FADDS+ F +A
Sbjct: 788 GIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQA 847
Query: 595 NTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYL 654
N + + + ++ YE SGQ IN+ KS ++ V + ++LKQ+L + KYL
Sbjct: 848 NVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYL 907
Query: 655 GLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILP 714
GLP G+ K +F ++ DRV K+ W LS AG+E+++KSV A+P Y MSCF LP
Sbjct: 908 GLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLP 967
Query: 715 DSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWW 774
+ ++IE ++ F+W ++RG+ W +WK+L SK +GGLGFRD FN AL+AK W
Sbjct: 968 KGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAW 1027
Query: 775 RIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQ 834
R+ P +L A+V K YF +L AK + SY W+S+L + ++G R IGDG
Sbjct: 1028 RLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQN 1087
Query: 835 VDILHDQWLPQGVP-VIGSQDLMAEFGVSKVSHLIDHAAK--SWKYALVDFIFHPATVSH 891
+ I D + P + +++ E +++L + W + + +
Sbjct: 1088 IRIGLDNIVDSHPPRPLNTEETYKEM---TINNLFERKGSYYFWDDSKISQFVDQSDHGF 1144
Query: 892 ILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAP-----L 946
I +I+L + D ++W G Y +SGY +L + + P++ P L
Sbjct: 1145 IHRIYLAKSKKPDKIIWNYNTTGEYTVRSGY------WLLTHDPSTNIPAINPPHGSIDL 1198
Query: 947 WKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVSCP 1006
+ W P+ K WR +S L L RGM +DP+CP C E E++ H +CP
Sbjct: 1199 KTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCP 1258
Query: 1007 VAQNFWFGSPLSL---------RVHGFSSMEDFLADFFRAADDDALALWQAGVYALWEMR 1057
A W+ S SL S++ +F+ D + L +W ++ +W+ R
Sbjct: 1259 FATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWL--IWRIWKAR 1316
Query: 1058 NRVV---FRDGEIPVPVAAMIQRCSMLAAAPVSEMTVVP-RPAPLLQATWARPPYGIYKL 1113
N VV FR+ ++A + L A + T P R + W PP K
Sbjct: 1317 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKC 1376
Query: 1114 NFDAAVATTG-EVGFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLTIQMEF 1172
NFDA E G I+RN G ++ + L H ++ + E ++Q T +
Sbjct: 1377 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 1436
Query: 1173 RRVLFETDCLQLFQLWKKPPDGRSYLSSIVG---DCFMLSRFFDYVDLSFVRRRGNSVAD 1229
+V E DC L L +G S+ SS+ D + F + F+RR+GN +A
Sbjct: 1437 TQVFMEGDCQTLINL----INGISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAH 1492
Query: 1230 FLAGTASKYT 1239
LA Y+
Sbjct: 1493 VLAKYGCTYS 1502
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 575 bits (1481), Expect = e-164
Identities = 382/1270 (30%), Positives = 605/1270 (47%), Gaps = 60/1270 (4%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
VYG P +H+ W + + WL +GDFN+ILS A+K+GG + + +
Sbjct: 485 VYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNM 544
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
S C + + G RF+W R TV+ LD +N AW + +P ++ + SDH
Sbjct: 545 VSHCDIEDMRSKGDRFSWVGER-HTHTVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDH 603
Query: 124 SPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSL----TEVPDRLSD 179
P+L+ + R R +FRF+ + K ++ +W + T + +R+S
Sbjct: 604 KPVLVHFNESFPR----RSKLFRFDNRLIDI-PTFKRIVQTSWRTNRNSRSTPITERISS 658
Query: 180 VSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEV-LMAINVAERDLDSLLEQEEV 238
+ R + ++I Q+ L + T+ V I + L EE+
Sbjct: 659 CRQAMARLKHASNLNSEQRIKKLQSSLNRAM--ESTRRVDRQLIPQLQESLAKAFSDEEI 716
Query: 239 WWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFG 298
+WKQ+SR W+K GD+NT +FH R +N + + DD GR D +I D+F
Sbjct: 717 YWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFT 776
Query: 299 GLFTSSNPEGIEETTNLVAGRVSETHLTV---LGEPFTREEVEEALFQMHPTKAPGLDGF 355
+F+++ GI+ + A S TV L + F+ E+ +A+ Q+ KAPG DG
Sbjct: 777 NIFSTN---GIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGL 833
Query: 356 PTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCN 415
FY+ WDI+G DV + + IN T + +IPKI P + +RPI+LCN
Sbjct: 834 TARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCN 893
Query: 416 VLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMM 475
VL+K+I+K + NRLK L I+ +Q+AF+PGR+I DN ++ +E H +K R M
Sbjct: 894 VLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYM 953
Query: 476 TLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLE 535
+K D+SKAYDRVEW FL+ ++ GF W+ IM+ + + + + P +
Sbjct: 954 AVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTR 1013
Query: 536 AYVRVI-LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARA 594
+ L +F+ + S L+ L G+++ N AP I+HL FADDS+ F +A
Sbjct: 1014 GIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQA 1073
Query: 595 NTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYL 654
N + + + ++ YE SGQ IN+ KS ++ V + + LKQ+L + KYL
Sbjct: 1074 NVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYL 1133
Query: 655 GLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILP 714
GLP G+ K +F ++ DRV K+ W LS AG+E+++KSV A+P Y MSCF LP
Sbjct: 1134 GLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLP 1193
Query: 715 DSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWW 774
+ ++IE ++ F+W ++RG+ W +WK+L SK +GGLGFRD FN AL+AK W
Sbjct: 1194 KGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAW 1253
Query: 775 RIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQ 834
R+ P +L A+V K YF +L AK + SY W+S+L + ++G R IGDG
Sbjct: 1254 RLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQN 1313
Query: 835 VDILHDQWLPQGVP-VIGSQDLMAEFGVSKVSHLIDHAAK--SWKYALVDFIFHPATVSH 891
+ I D + P + +++ E +++L + W + + +
Sbjct: 1314 IRIGLDNIVDSHPPRPLNTEETYKEM---TINNLFERKGSYYFWDDSKISQFVDQSDHGF 1370
Query: 892 ILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAP-----L 946
I +I+L + D ++W G Y +SGY +L + + P++ P L
Sbjct: 1371 IHRIYLAKSKKPDKIIWNYNTTGEYTVRSGY------WLLTHDPSTNIPAINPPHGSIDL 1424
Query: 947 WKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVSCP 1006
+ W P+ K WR +S L L RGM +DP CP C E E++ H +CP
Sbjct: 1425 KTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCP 1484
Query: 1007 VAQNFWFGSPLSL---------RVHGFSSMEDFLADFFRAADDDALALWQAGVYALWEMR 1057
A W S SL S++ +F+ D + L +W ++ +W+ R
Sbjct: 1485 FATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWL--IWRIWKAR 1542
Query: 1058 NRVV---FRDGEIPVPVAAMIQRCSMLAAAPVSEMTVVP-RPAPLLQATWARPPYGIYKL 1113
N VV FR+ ++A + L A + T P R + W PP K
Sbjct: 1543 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKC 1602
Query: 1114 NFDAAVATTG-EVGFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLTIQMEF 1172
NFDA E G I+RN G ++ + L H ++ + E ++Q T +
Sbjct: 1603 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 1662
Query: 1173 RRVLFETDCLQLFQLWKKPPDGRSYLSSIVG---DCFMLSRFFDYVDLSFVRRRGNSVAD 1229
+V E DC L L +G S+ SS+ D + F + F+R++GN +A
Sbjct: 1663 TQVFMEGDCQTLINL----INGISFHSSLANHLEDISFWANKFASIQFGFIRKKGNKLAH 1718
Query: 1230 FLAGTASKYT 1239
LA Y+
Sbjct: 1719 VLAKYGCTYS 1728
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 563 bits (1452), Expect = e-160
Identities = 387/1253 (30%), Positives = 597/1253 (46%), Gaps = 75/1253 (5%)
Query: 12 NKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCACSDCALHV 71
N+ W I WL GDFNDIL ++K GG L G S L
Sbjct: 56 NRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWD 115
Query: 72 VDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDHSPILLMCA 131
++ TG +W R ++ RLD AL N +W L+P +K ++ SDH P++
Sbjct: 116 INHTGNSLSWRGTRYSH-FIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYFG 174
Query: 132 DRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTE-VPDRLSDVSGLLGRWGKE 190
KR FRF+ L++ EE + ++ E W + + V ++S + +W KE
Sbjct: 175 ----APPLKRSKPFRFDRR-LREKEEIRALVKEVWELARQDSVLYKISRCRQSIIKWTKE 229
Query: 191 QFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQEEVWWKQRSRASWLK 250
Q + + I Q L+ D L I ++L++ QEE++WKQ SR WL
Sbjct: 230 QNSNSAKAIKKAQQALESALSADIPDPSL--IGSITQELEAAYRQEELFWKQWSRVQWLN 287
Query: 251 HGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFGGLFTSSNPEGIE 310
GD+N +FH RR N + V++D +G+E ++ IA + YF +FT+SN ++
Sbjct: 288 SGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQ 347
Query: 311 ETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDD 370
++ +S L + + E++EALF + KAPG DGF F+ YWDII D
Sbjct: 348 VVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEAD 407
Query: 371 VSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITKTIANRLK 430
VS +N+T + LIPKI P + +RPI+LCNV +KI+ K + RL+
Sbjct: 408 VSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQ 467
Query: 431 IILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEW 490
L ++I QSAFVPGR I DN L+ +E HF++ + + M +K DMSKAYDR++W
Sbjct: 468 PWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKW 527
Query: 491 SFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCL------TEIPSRVLLLLEAYVRVILFR 544
+FLQ VL ++GF W+ +M + + + + +PSR L + L
Sbjct: 528 NFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDP-----LSP 582
Query: 545 LIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARANTQEAECVLN 604
+F+ E S L ++ ++ GI+VA +P ++HLLFADD++ F + N + N
Sbjct: 583 YLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSN 642
Query: 605 ILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLGLPTMIGKFK 664
IL YE ASGQ INL KS ++ S PQ+ +K L ++ KYLGLP G+ K
Sbjct: 643 ILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRK 702
Query: 665 TRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILPDSLCADIERM 724
IF+ + DR+ ++ W LS AG+++L+K+V+ ++PSY M CF LP SLC I+ +
Sbjct: 703 RDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSV 762
Query: 725 VSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWRIYTQPETLL 784
++RF+W DKR + W SW KLT +GGLGFR+ + AK WRI +P +LL
Sbjct: 763 LTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE-------AKLSWRILKEPHSLL 815
Query: 785 AQVFKGVYFAQGDLLGAKRGYRPSYA---WSSILQSSWIFQEGGRWKIGDGSQVDILHDQ 841
++V G Y + PS+A W IL + ++G W IG G +++ +
Sbjct: 816 SRVLLGKYCNTSSFMDCSAS--PSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEA 873
Query: 842 WL-------PQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDFIFHPATVSHILK 894
WL P G P ++DL V LI H KSW + P I K
Sbjct: 874 WLSPSSPQTPIGPPTETNKDL-------SVHDLICHDVKSWNVEAIRKHL-PQYEDQIRK 925
Query: 895 IHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAPLWKK-FWRT 953
I + D+L+W G Y +K+GY + N A ++ W+K W+
Sbjct: 926 ITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDFN--------WQKNIWKI 977
Query: 954 SAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVSCPVAQNFWF 1013
P+ K W+ + LP+ AL RR ++ + C C E ++ HL + CP A+ W
Sbjct: 978 HTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTESSL-HLMLLCPYAKKVWE 1036
Query: 1014 GSPL----SLRVHGFSSMEDFLADFFRAADDDALALWQAGVYA-----LWEMRNRVVFRD 1064
+P+ S H SS+ L D R L A +Y LW+ RNR++F +
Sbjct: 1037 LAPVLFNPSEATH--SSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDN 1094
Query: 1065 GEIPVPVAAMIQRCSMLAAAPVSEMTVVPRPAPLLQATWARPPYGIYKLNFDAAVATTGE 1124
++ + + A A + ++ P+P+ P + DAA T+G
Sbjct: 1095 HS--CSEEGLVLKAILDARAWMEAQLLIHHPSPISDYPSPTPNLKVTSCFVDAAWTTSGY 1152
Query: 1125 VGFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLTIQMEFRRVLFETDCLQL 1184
G G +++ + SA++ E L ++ + R++ +DC +L
Sbjct: 1153 CGMGWFLQDPYKVKIKENQSSSSFVGSALMAETLAVHLALVDALSTGVRQLNVFSDCKEL 1212
Query: 1185 FQLWKKPPDGRSY--LSSIVGDCFMLSRFFDYVDLSFVRRRGNSVADFLAGTA 1235
L G+S L ++ D LS F ++ F+ R N VAD LA +A
Sbjct: 1213 ISLLN---SGKSIVELRGLLHDIRELSVSFTHLCFFFIPRLSNVVADSLAKSA 1262
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 558 bits (1437), Expect = e-159
Identities = 375/1234 (30%), Positives = 592/1234 (47%), Gaps = 64/1234 (5%)
Query: 1 VLAVYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVA 60
+ VYG P + + W + W IGDFNDI S +KLGG Q
Sbjct: 79 ISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCF 138
Query: 61 TCACSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHC 120
+C++H + TG FTW NR V+ +LD N AW S++P+ + +
Sbjct: 139 EHMLLNCSMHELGSTGNSFTWGGNR-NDQWVQCKLDRCFGNPAWFSIFPNAHQWFLEKFG 197
Query: 121 SDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTEVPD----R 176
SDH P+L+ + + + + FR+++ L + C EVI +W ++++
Sbjct: 198 SDHRPVLVKFTNDNELFRGQ----FRYDKR-LDDDPYCIEVIHRSWNSAMSQGTHSSFFS 252
Query: 177 LSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRK-DQTKEVLM----AINVAERDLDS 231
L + + W ++ Q+ ++ L++ D K + + I + L
Sbjct: 253 LIECRRAISVWKHS-------SDTNAQSRIKRLRKDLDAEKSIQIPCWPRIEYIKDQLSL 305
Query: 232 LLEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIAR 291
EE++W+Q+SR WL GDKNT FFH + R +N + L D+N +E ++D +
Sbjct: 306 AYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGK 365
Query: 292 VLGDYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPG 351
+ +F LFTS+ + +V+ L + T EV A+F ++ APG
Sbjct: 366 IASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSINKESAPG 425
Query: 352 LDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPI 411
DGF LF+Q++WD++ + + + P N T + LIPKI P+ + RPI
Sbjct: 426 PDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPI 485
Query: 412 SLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGR 471
SLC+VL+KII+K + RLK LP I+ TQSAFVP RLI DN LV +E H ++
Sbjct: 486 SLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRIS 545
Query: 472 NGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVL 531
M K DMSKAYDRVEW FL+ ++ +GF W+S IM+ C+T + VL
Sbjct: 546 KEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMN---------CVTSVSYSVL 596
Query: 532 LLLEAYVRVI----------LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISH 581
+ + Y +I L +F+ E +L ++ + GI+ ++ ++H
Sbjct: 597 INGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNH 656
Query: 582 LLFADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQL 641
LLFADD+++ +A QE E ++ LS Y + SGQ+INL+KS ++ +NV + +K
Sbjct: 657 LLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSR 716
Query: 642 LNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQ 701
++ KYLGLP + K +F F+K+++ +L GW TLS+ G+EVL+KS+
Sbjct: 717 SGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIAL 776
Query: 702 AIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDF 761
A+P YVMSCF LP +LC + ++ F+W KR + W SW++LT K GG GF+D
Sbjct: 777 ALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDL 836
Query: 762 KSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIF 821
+ FN AL+AK WR+ + +L ++VF+ YF+ D L A RG RPSYAW SIL +
Sbjct: 837 QCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELL 896
Query: 822 QEGGRWKIGDGSQVDILHDQWLPQGV---PVIGSQDLMAEFGVSKVSHLIDHAAKSWKYA 878
+G R IG+G + + D+WL G P+ + + + KVS LID +++W
Sbjct: 897 MQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDL---KVSQLIDPTSRNWNLN 953
Query: 879 LVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYS 938
++ +F V ILK PL D+ W + +G Y K+GY F+ K
Sbjct: 954 MLRDLFPWKDVEIILK-QRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAK 1012
Query: 939 QPSLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETV 998
L+ K W P+ + W+ + +P+ L RG+ D C +C E ET+
Sbjct: 1013 VKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETI 1072
Query: 999 FHLFVSCPVAQNFWFGSPLSLRVHGFSSM----EDFLADFFRAADDD----ALALWQAGV 1050
H+ CP+A+ W + LS FS+ L D + D ++ W +
Sbjct: 1073 NHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWI--L 1130
Query: 1051 YALWEMRNRVVFR-DGEIPVPVAAMIQRCSMLAAAPVSEMTVVPRPAPLLQAT-WARPPY 1108
+ LW+ RN ++F G I ++ + S T + L+ T W P
Sbjct: 1131 WFLWKNRNALLFEGKGSI---TTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITKWCPPLP 1187
Query: 1109 GIYKLNFDAAVATTGEV-GFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLT 1167
G K N A + G +VR+ G+VL + + S + + W+++
Sbjct: 1188 GELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALESM 1247
Query: 1168 IQMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSI 1201
F RV+F + ++ Q KP + L I
Sbjct: 1248 THHHFDRVIFASSTHEIIQALHKPHEWPLLLGDI 1281
>At1g24640 hypothetical protein
Length = 1270
Score = 534 bits (1376), Expect = e-151
Identities = 337/1032 (32%), Positives = 501/1032 (47%), Gaps = 40/1032 (3%)
Query: 1 VLAVYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVA 60
V VYG PD + + W I R G W GDFNDIL +K GG +
Sbjct: 64 VSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAF 123
Query: 61 TCACSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHC 120
C L + G FTW R ++ RLD A N W +P + +
Sbjct: 124 NEMIKGCDLVEMPAHGNGFTWAGRRGDHW-IQCRLDRAFGNKEWFCFFPVSNQTFLDFRG 182
Query: 121 SDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSL----TEVPDR 176
SDH P+L+ + Q FRF++ +L K E+ KE I TW R V DR
Sbjct: 183 SDHRPVLI----KLMSSQDSYRGQFRFDKRFLFK-EDVKEAIIRTWSRGKHGTNISVADR 237
Query: 177 LSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQE 236
L L W K+ + KI+ +A L++ Q + ++V ++DL +E
Sbjct: 238 LRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQ--SLVWPIFQRVSVLKKDLAKAYREE 295
Query: 237 EVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDY 296
E +WKQ+SR WL+ G++N+++FH Q R+R IE LKD NG +A V Y
Sbjct: 296 EAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAY 355
Query: 297 FGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFP 356
FG LF SSNP G + + + RVSE L + +E++EA+F + P APG DG
Sbjct: 356 FGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMS 415
Query: 357 TLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNV 416
LF+Q YW +G+ V++ + I P N T L LIPK P RPISLC+V
Sbjct: 416 ALFFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSV 475
Query: 417 LFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMT 476
L+KII+K +A RL+ LP+I+ TQSAFV RLI DN LV +E H +K + M
Sbjct: 476 LYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMA 535
Query: 477 LKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLEA 536
+K DMSKAYDRVEWS+L+ +L +GF WV+ IM + + + + + P +++L
Sbjct: 536 VKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRG 595
Query: 537 YVR-VILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARAN 595
+ L +F+ E + LL ++ W L GI+ + P++ HLLFADDS+ +A+
Sbjct: 596 LRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKAS 655
Query: 596 TQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLG 655
+++ + IL Y A+GQ INL+KS ++ V + ++ L + YLG
Sbjct: 656 REQSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLG 715
Query: 656 LPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILPD 715
LP K + +++KDR+ +KL W LS+ G+EVL+KSV A+P + MSCF LP
Sbjct: 716 LPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPI 775
Query: 716 SLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWR 775
+ C ++E ++ F+W R + W SW++L K GGLGFRD +SFN AL+AK WR
Sbjct: 776 TTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWR 835
Query: 776 IYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQV 835
+ P+ LL+++ K YF D L A RPS+ W SIL + +G + ++GDG+ +
Sbjct: 836 LLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASL 895
Query: 836 DILHDQWL-PQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDFIFHPATVSHILK 894
+ D W+ G ++L+ + + KV L++ W ++ +F P + I
Sbjct: 896 FVWIDPWIDDNGFRAPWRKNLIYDVTL-KVKALLNPRTGFWDEEVLHDLFLPEDILRIKA 954
Query: 895 IHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAPLWKKFWRTS 954
I P+ D +W G++ KS Y + S S L + W
Sbjct: 955 IK-PVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQ 1013
Query: 955 AQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVSCPVAQNFWFG 1014
P+ K W+ VC E+ H CP+++ W
Sbjct: 1014 TDPKIKIFLWK------------------------VCGELGESTNHTLFLCPLSRQIWAL 1049
Query: 1015 SPLSLRVHGFSS 1026
S GFS+
Sbjct: 1050 SDYPFPPDGFSN 1061
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 533 bits (1373), Expect = e-151
Identities = 333/1029 (32%), Positives = 510/1029 (49%), Gaps = 37/1029 (3%)
Query: 38 NDILSPADKLGGDLPDMGRMQVATCACSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDY 97
N+IL ++K GG D G S L + ++G F+W R V +RLD
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMR-YDWFVRQRLDR 94
Query: 98 ALVNDAWESLWPSNKVCHVHRHCSDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEE 157
A+ N++W +PS + ++ SDH P+++ + R KR FRF+ L+ N+
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARV----KRRGQFRFDNR-LRDNDV 149
Query: 158 CKEVIAETWGRSL-TEVPDRLSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTK 216
+I ETW + V +++ + W + Q + I Q L+E D
Sbjct: 150 VNALIQETWTNAGDASVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTADPPN 209
Query: 217 EVLMAINVAERDLDSLLEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLK 276
I L+ + EE +WKQRSR WL GD+NT +FH RR +N + V++
Sbjct: 210 PT--TIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVME 267
Query: 277 DDNGREVEDDADIARVLGDYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREE 336
D NG ++ I++++ YF +FTS + + VS+ L EE
Sbjct: 268 DINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEE 327
Query: 337 VEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLI 396
V++A+F ++ +KAPG DGF FY YW II DV P +N+T + LI
Sbjct: 328 VKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLI 387
Query: 397 PKIMKPEHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALV 456
PK + P +RPI+LCN+ +KI+ K + R+++ILP +I + QSAFVPGR+I DN L+
Sbjct: 388 PKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLI 447
Query: 457 VYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPL 516
+E HF++ + ++ M +K DMSKAYDRVEW FL+ VLQ+ GF W+ ++
Sbjct: 448 THEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTS 507
Query: 517 LGFPLCLTEIPS-RVLLLLEAYVRVILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANR 575
+ + + P +V+ L +F+ E S L R+ L L G++V+
Sbjct: 508 VSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSIN 567
Query: 576 APVISHLLFADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGF 635
P ++HLLFADD++ F++++ + + ILS Y +ASGQ IN KS ++ S P++
Sbjct: 568 GPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVK 627
Query: 636 NELKQLLNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVL 695
++K++L + KYLGLP G+ K IF + D++ +K W LS+AG++V+
Sbjct: 628 GQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVM 687
Query: 696 IKSVVQAIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGG 755
+K+V+ ++P Y MSCF LP +LC I+ +++RF+W D R W +W KLT K GG
Sbjct: 688 LKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGG 747
Query: 756 LGFRDFKSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSIL 815
LGFRD + N +L+AK WR+ PE+LL+++ G Y + K +PS+ W SI+
Sbjct: 748 LGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSII 807
Query: 816 QSSWIFQEGGRWKIGDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSW 875
I +EG W I +G +V I +D WL P++ + E +VS LI+ W
Sbjct: 808 AGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQW 867
Query: 876 KYALVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSS 935
+ + I P + I ++ P + VD L W G Y S+SGY
Sbjct: 868 DWNKIAVIL-PNYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGY------------G 914
Query: 936 TYSQPSLPAPL----WK-KFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPV 990
S S+P P W+ W+ P+ K + W+ LP+ L RR + C
Sbjct: 915 IASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHR 974
Query: 991 CANEEETVFHLFVSCPVAQNFWFGSPL-SLRVHGFSSMEDFLADFFRA-------ADDDA 1042
C E T HLF C A W +PL V SSM D L+ +A A
Sbjct: 975 CGAPESTT-HLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLKKAIILPPTGVTSAA 1033
Query: 1043 LALWQAGVY 1051
L W G+Y
Sbjct: 1034 LFPWICGIY 1042
>At3g31420 hypothetical protein
Length = 1491
Score = 507 bits (1306), Expect = e-143
Identities = 360/1292 (27%), Positives = 587/1292 (44%), Gaps = 125/1292 (9%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPG-DDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATC 62
VYG P+ ++H W + R W +GDFN+ILS +K GG L Q
Sbjct: 284 VYGHPNPSHRHHLWERLERLNTTRQGTAWFIMGDFNEILSNREKRGGRLRPERTFQDFRN 343
Query: 63 ACSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSD 122
C + G RF+W R V LD + N+ W +L+P ++ + SD
Sbjct: 344 MVRGCNFTDLKSVGDRFSWAGKRGDHH-VTCSLDRTMANNEWHTLFPESETVFMEYGESD 402
Query: 123 HSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSL------TEVPDR 176
H P++ + +++ ++ Y R L E K+V+ W R + + +
Sbjct: 403 HRPLVTNISAQKEERRGFFSYDSR-----LTHKEGFKQVVLNQWHRRNGSFEGDSSLNRK 457
Query: 177 LSDVSGLLGRWGKEQFGD-----------LPRKISDGQALLQELQRKDQTKEVLMAINVA 225
L + + RW K + L R I+ G A +E ++ Q
Sbjct: 458 LVECRQAISRWKKNNRVNAEERIKIIRHKLDRAIATGTATPRERRQMRQ----------- 506
Query: 226 ERDLDSLLEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVED 285
DL+ EE++W+ +SR+ WL GD+NTR+FH RR RN + ++D +G
Sbjct: 507 --DLNQAYADEEIYWQTKSRSRWLNAGDRNTRYFHSTTKTRRCRNRLLSVQDSDGDICRG 564
Query: 286 DADIARVLGDYFGGLFTSSNPEGIEETTNLVAG---RVSETHLTVLGEPFTREEVEEALF 342
D +IA+V +YF L+ S+ P ++ G ++++ L P T E+EE++F
Sbjct: 565 DENIAKVAINYFDDLYKST-PNTSLRYADVFQGFQQKITDEINEDLIRPVTELEIEESVF 623
Query: 343 QMHPTKAPGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKP 402
+ P++ P DGF FYQ++W I V + + N T L LIPK+ P
Sbjct: 624 SVAPSRTPDPDGFTADFYQQFWPDIKQKVIDEVTRFFERSELDERHNHTNLCLIPKVETP 683
Query: 403 EHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFH 462
+FRPI+LCNV +KII+K + NRLK L I + Q+AFVPGRLI +NA++ +E ++
Sbjct: 684 TTIAKFRPIALCNVSYKIISKILVNRLKKHLGGAITENQAAFVPGRLITNNAIIAHEVYY 743
Query: 463 FMKKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLC 522
+K R N M LK D++KAYDR+EW FL+ +++MGF W+ IM ++ F +
Sbjct: 744 ALKARKRQANSYMALKTDITKAYDRLEWDFLEETMRQMGFNTKWIERIMICVTMVRFSVL 803
Query: 523 LTEIPSRVLLLLEAYVRV--ILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVIS 580
+ P + E +R L +F+ E S ++ ++ L GI+++ + P IS
Sbjct: 804 INGSPHGTIKP-ERGIRHGDPLSPYLFILCAEVLSHMIKQAEINKKLKGIRLSTQGPFIS 862
Query: 581 HLLFADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQ 640
HLLFADDSI F AN +R+ + D + ++
Sbjct: 863 HLLFADDSIFFTLAN--------------QRSCTAIKEPDTKR-------------RMRH 895
Query: 641 LLNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVV 700
LL ++ KYLGLP K K +FN++ ++V K +GW + LS+ G+EVL+K+V
Sbjct: 896 LLGIHNEGGEGKYLGLPEQFNKKKKELFNYIIEKVKDKTQGWSKKFLSQGGKEVLLKAVA 955
Query: 701 QAIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRD 760
A+P Y M+ F L +C +I+ +++RF+W + +G+ W +WK+++ K +GGLGF++
Sbjct: 956 LAMPVYSMNIFKLTKEVCEEIDSLLARFWWSSGNETKGMHWFTWKRMSIPKKEGGLGFKE 1015
Query: 761 FKSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWI 820
++FN+AL+ K W + P L+A+V +G YF + +++ A +G R S+ W SIL +
Sbjct: 1016 LENFNLALLGKQTWHLLQHPNCLMARVLRGRYFPETNVMNAVQGRRASFVWKSILHGRNL 1075
Query: 821 FQEGGRWKIGDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALV 880
++G R +GDGS ++ D WLP P + A + S D
Sbjct: 1076 LKKGLRCCVGDGSLINAWLDPWLPLHSPRAPYKQEDAPEQLLVCSTARD----------- 1124
Query: 881 DFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQP 940
D + W T DG Y KS Y L + T+ P
Sbjct: 1125 -----------------------DLIGWHYTKDGMYTVKSAYWLA--THLPGTTGTHPPP 1159
Query: 941 SLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFH 1000
L + W+T P+ K W+++S + L R ++ +C C +EET H
Sbjct: 1160 G-DIKLKQLLWKTKTAPKIKHFCWKILSGAIATGEMLRYRHINKQSICKRCCRDEETSQH 1218
Query: 1001 LFVSCPVAQNFWFGSPLSLRVHGFSSMEDFLADFFRAA---DDDALALWQA----GVYAL 1053
LF C A+ W G+ L + F L + FRA + W+ ++ L
Sbjct: 1219 LFFECDYAKATWRGAGLPNLI--FQDSIVTLEEKFRAMFTFNPSTTNYWRQLPFWILWRL 1276
Query: 1054 WEMRNRVVFRDGEIPVPVAAMIQRCSMLAAAPVSEMTVVPRPAPLLQAT------WARPP 1107
W RN + F+ IP V + + L + + V P + W RP
Sbjct: 1277 WRSRNILTFQQKHIPWEVTVQLAKQDALEWQDIEDRVQVINPLSRRHSNRYAANRWTRPV 1336
Query: 1108 YGIYKLNFDAAVATTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQLT 1167
G K N+D + +T G ++R+ G+ + H +A+ +MQ
Sbjct: 1337 CGWKKCNYDGSYSTIINSKAGWVIRDEHGQFIGGGQAKGKHTNNALESALQALIIAMQSC 1396
Query: 1168 IQMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSIVGDCFMLSRFFDYVDLSFVRRRGNSV 1227
+V FE D ++++Q+ + R + + + D R F ++ RR N
Sbjct: 1397 WSHGHTKVCFEGDNIEVYQILNE-GKARFDVYNWIRDIQAWKRRFQECRFLWINRRNNKP 1455
Query: 1228 ADFLA-GTASKYTDMVWLEEVPREVITLIHKD 1258
AD LA G ++ + +P + + +H D
Sbjct: 1456 ADTLAKGHLQQHEHFKFYSFIPPVIFSALHLD 1487
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 497 bits (1280), Expect = e-140
Identities = 347/1188 (29%), Positives = 551/1188 (46%), Gaps = 64/1188 (5%)
Query: 31 WLCIGDFNDILSPADKLGGDLPDMGRMQVATCACSDCALHVVDFTGRRFTWTNNRPKPGT 90
W IGDFNDILS KLGG + Q +C +H + +G FTW R
Sbjct: 94 WCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLNCDMHQMGSSGNSFTWGGTR-NDQW 152
Query: 91 VEERLDYALVNDAWESLWPSNKVCHVHRHCSDHSPILLMCADRRKRKQSKREYMFRFEEL 150
++ +LD N W +++ ++ + + S H P+L+ + ++ + + Y RF E
Sbjct: 153 IQCKLDRCFGNSEWFTMFSNSHQWFLEKLGSHHRPVLVNFVNDQEVFRGQFCYDKRFAE- 211
Query: 151 WLQKNEECKEVIAETW-GRSLTEVPD---RLSDVSGLLGRWGKEQFGDLPRKISDGQALL 206
+ +C +W G +++V R+ + W K + +I ++ L
Sbjct: 212 ----DPQCAASTLSSWIGNGISDVSSSMLRMVKCRKAISGWKKNSDFNAQNRILRLRSEL 267
Query: 207 QELQRKDQTKEVLMAINVAERDLDSLLEQEEVWWKQRSRASWLKHGDKNTRFFHQKANQR 266
E K + I+V + L +EE +W+ +S+ WL GD+N++FF
Sbjct: 268 DE--EKSKQYPCWSRISVIQTQLGVAFREEESFWRLKSKDKWLFGGDRNSKFFQAMVKAN 325
Query: 267 RKRNLIEVLKDDNGREVEDDADIARVLGDYFGGLFTSSNPEGIEETTNLVAGRVSETHLT 326
R +N + L D+NG E + + + YF LF SS P + + RVSE
Sbjct: 326 RTKNSLRFLVDENGNEHTLNREKGNIASVYFENLFMSSYPANSQSALDGFKTRVSEEMNQ 385
Query: 327 VLGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPG 386
L + T E+ A+F ++ AP +K G D GV+P
Sbjct: 386 ELTQAVTELEIHSAVFSINVESAP----------EKLECCQGSDYIEILGFFETGVLPQE 435
Query: 387 MINQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVP 446
N T L LIPK P+ + RPISLC+VL+KII+K ++ +LK LP I+ +QSAF
Sbjct: 436 W-NHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIVSPSQSAFFA 494
Query: 447 GRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSW 506
RLI DN L+ +E H ++ M K DMSKAYDRVEWSFLQ +L +GF W
Sbjct: 495 ERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKW 554
Query: 507 VSLIMSVSPLLGFPLCLTEIPSRVLLLLEAYVRVILFR----------LIFLSYVERCSQ 556
+S IM C+T + VL+ + + + R +F+ E
Sbjct: 555 ISWIMG---------CVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIH 605
Query: 557 LLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARANTQEAECVLNILSTYERASGQV 616
+L ++ + GI+ P ++HLLF DD+ + RA + E ++ LS Y SGQ+
Sbjct: 606 ILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQL 665
Query: 617 INLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVW 676
IN++KS ++ V ++ +K ++ KYLGLP + K +F ++K+++
Sbjct: 666 INVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQ 725
Query: 677 KKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDK 736
L GW + TLS+ G+E+L+KS+ A+P Y+M+CF LP LC + ++ F+W
Sbjct: 726 SHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFS 785
Query: 737 RGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQG 796
+ W KKLT K GG GF+D + FN AL+AK WR+++ +++++Q+FK YF
Sbjct: 786 NKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNT 845
Query: 797 DLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQVDILHDQWLPQGVP--VIGSQD 854
D L A++G RPSY W SIL + G + IG+G Q ++ D+WL G +
Sbjct: 846 DFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHS 905
Query: 855 LMAEFGVSKVSHLIDHAAKSWKYALVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDG 914
LM KVSHLID ++W + +FH V I+ PL S D+ W T +G
Sbjct: 906 LMNIH--MKVSHLIDPLTRNWNLKKLTELFHEKDVQLIMH-QRPLISSEDSYCWAGTNNG 962
Query: 915 NYCSKSGY-IFVRKNFLGACSSTYSQPSLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPI 973
Y KSGY R+ F PS+ PL+ K W P+ K W+ + L +
Sbjct: 963 LYTVKSGYERSSRETFKNLFKEADVYPSV-NPLFDKVWSLETVPKIKVFMWKALKGALAV 1021
Query: 974 RAALHRRGMDVDPLCPVCANEEETVFHLFVSCPVAQNFWFGSPLSLRVHGF-SSMEDFLA 1032
L RG+ C C E ET+ HL CP A+ W S + GF +S+ +
Sbjct: 1022 EDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNIN 1081
Query: 1033 DFFRAADDDALALWQAGV-----YALWEMRNRVVFRDGEIPVP--VAAMIQRCSM-LAAA 1084
+ + + + V + +W+ RN+ +F+ + VA + C++ + A
Sbjct: 1082 HVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQ 1141
Query: 1085 PVSEMTVVPRPAPLLQATWARPPYGIYKLNFDAAVATTGEV-GFGLIVRNMLGEVLASAA 1143
S V P + W PP G K N A + ++ G ++R+ +G+VL +
Sbjct: 1142 EKSSGGVSPS-----EHKWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVLLHSR 1196
Query: 1144 QYLLHAASAILGEALVFRWSMQLTIQMEFRRVLFETDCLQLFQLWKKP 1191
+ S + + W+++ F +V F + + KP
Sbjct: 1197 RSYSQVYSLFDAKIKSWDWALESMDHFHFDKVTFAATSHDIIKALHKP 1244
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 483 bits (1242), Expect = e-136
Identities = 374/1269 (29%), Positives = 576/1269 (44%), Gaps = 110/1269 (8%)
Query: 1 VLAVYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVA 60
++ VY P + WG ++ G + P L GDFN IL +++GG+ GR+
Sbjct: 3 LIVVYAAPSVSRRSGLWGELKDVVNGLEGPLLIGGDFNTILWVDERMGGN----GRLSPD 58
Query: 61 TCACSDCA--LHVVD--FTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHV 116
+ A D L ++D F G +FTW R + V +RLD V W V H+
Sbjct: 59 SLAFGDWINELSLIDLGFKGNKFTWRRGRQESTVVAKRLDRVFVCAHARLKWQEAVVSHL 118
Query: 117 HRHCSDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTEVPDR 176
SDH+P+ + ++RK
Sbjct: 119 PFMASDHAPLYVQLEPLQQRK--------------------------------------- 139
Query: 177 LSDVSGLLGRWGKEQFGDL---PRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLL 233
L +W +E FGD+ K+ +Q+L + ++L V +++D +L
Sbjct: 140 -------LRKWNREVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLVL 192
Query: 234 EQEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVL 293
EQEE W Q+SR +++ GD+NT FFH RR+RN IE LK D+ R V D ++ +
Sbjct: 193 EQEETLWFQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMA 252
Query: 294 GDYFGGLFTSSNPEGIEETTNLVA----GRVSETHLTVLGEPFTREEVEEALFQMHPTKA 349
Y+ L++ E + E N++ +SE L + FT+ EV A+ M KA
Sbjct: 253 LTYYKRLYSL---EDVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSAVKSMGRFKA 309
Query: 350 PGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFR 409
PG DG+ +FYQ+ W+ +G V+ F L+ + + P N LLVLI K+ KPE QFR
Sbjct: 310 PGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFR 369
Query: 410 PISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRIS 469
P+SLCNVLFKIITK + RLK ++ +I Q++F+PGRL IDN ++V E H M+++
Sbjct: 370 PVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRK-K 428
Query: 470 GRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIM------SVSPLLGFPLCL 523
GR G M LKLD+ KAYDRV W FLQ L+ G W S IM S+S L
Sbjct: 429 GRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTD 488
Query: 524 TEIPSRVLLLLEAYVRVILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLL 583
+ +P+R L + L +F+ +ER L+ SV I V+ +SH+
Sbjct: 489 SFVPARGLRQGDP-----LSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVC 543
Query: 584 FADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLN 643
FADD I+FA A+ + + +L + ASGQ ++L+KS++ S NV + + +
Sbjct: 544 FADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESG 603
Query: 644 VNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAI 703
+ + KYLG+P + + F V +RV +L GWK +LS AGR L K+V+ +I
Sbjct: 604 IGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSI 663
Query: 704 PSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKS 763
P +VMS +LP S ++R F WG ++K+ SW+K+ + K +GG+G R +
Sbjct: 664 PVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARD 723
Query: 764 FNIALVAKNWWRIYTQPETLLAQVFKGVYFAQG--DLLGAKRGYRPSYAWSSI-LQSSWI 820
N ALVAK WR+ E+L A+V + Y G D K R S W S+ + +
Sbjct: 724 MNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREV 783
Query: 821 FQEGGRWKIGDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSWKYALV 880
+G W GDG + D+WL Q V D++ E KV+ W ++
Sbjct: 784 VVKGVGWVPGDGCTIRFWLDRWLLQEPLVELGTDMIPEGERIKVAADYWLPGSGWNLEIL 843
Query: 881 DFIFHPATV-----SHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSS 935
++ P TV S ++++ L G+ D + W T DG + +S Y ++
Sbjct: 844 G-LYLPETVKRRLLSVVVQVFL---GNGDEISWKGTQDGAFTVRSAYSLLQ-------GD 892
Query: 936 TYSQPSLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEE 995
+P++ + + W+ R + W V +++ RR + + +C VC E
Sbjct: 893 VGDRPNM-GSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAE 951
Query: 996 ETVFHLFVSCPVAQNFWFGSPLSLRVHGFSSMEDFLADFFRAADDDALALWQA----GVY 1051
ET+ H+ CP + W R H F S L ++ D +W G++
Sbjct: 952 ETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQS--LLEWLFTNMDPVKGIWPTLFGMGIW 1009
Query: 1052 ALWEMRNRVVFRDGEIPVP----VAAMIQRCSMLAAAPVSEMTVVPRPAPLLQATWARPP 1107
W+ R VF + +I + M + + V R +++ W P
Sbjct: 1010 WAWKWRCCDVFGERKICRDRLKFIKDMAEEVRRVHVGAVGNRPNGVRVERMIR--WQVPS 1067
Query: 1108 YGIYKLNFD-AAVATTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEALVFRWSMQL 1166
G K+ D A+ G G +RN GE L A + + +A L E + + +
Sbjct: 1068 DGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFA-LNIGSCAAPLAELWGAYYGLLI 1126
Query: 1167 TIQMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSIVGDCFMLSRFFDYVDLSFVRRRGNS 1226
FRRV + DC + LS +V C V +S V R N
Sbjct: 1127 AWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANR 1186
Query: 1227 VADFLAGTA 1235
+AD LA A
Sbjct: 1187 LADGLANYA 1195
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 470 bits (1210), Expect = e-132
Identities = 309/1042 (29%), Positives = 506/1042 (47%), Gaps = 49/1042 (4%)
Query: 176 RLSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQR-KDQTKEVLMAINVAERDLDSLLE 234
RL + + +W +E + +I+ L +EL + K T I++ + L
Sbjct: 3 RLVECRKAISQWKRENDFNAKSRITK---LRRELDKEKSATFPSWTQISLLQDVLGDAYR 59
Query: 235 QEEVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLG 294
+EE +W+ +SR W+ GDKN++FF R N + L D+NG E + + ++
Sbjct: 60 EEEDFWRLKSRDKWMVGGDKNSKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKIAV 119
Query: 295 DYFGGLFTSSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDG 354
+F LF+SS P ++ RV+E L + +E+ +A+F ++ APG DG
Sbjct: 120 TFFEDLFSSSYPSSMDSVLEGFNKRVTEDMNQDLTKKVNEQEIYKAVFSINAESAPGPDG 179
Query: 355 FPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLC 414
F LF+Q+ W ++ + + + Q I P N T L LIPKI KP RPISLC
Sbjct: 180 FTALFFQRQWPLVKNQIISDIELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLC 239
Query: 415 NVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGM 474
+V++KII+K ++ RLK LP I+ TQSAFV RL+ DN ++ +E H ++
Sbjct: 240 SVMYKIISKILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDF 299
Query: 475 MTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLL 534
M K DMSKAYDRVEW FL+G+L +GF +W++ +M+ C++ + VL+
Sbjct: 300 MVFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMA---------CVSSVSYSVLING 350
Query: 535 EAYVRVILFR----------LIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLF 584
+ + + R +F+ E +L ++ + + GI+ P ++HLLF
Sbjct: 351 QPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGIQFNGTGPSVNHLLF 410
Query: 585 ADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNV 644
ADD+++ +A+ E +++ LS Y SGQ+IN +KS ++ V + + +
Sbjct: 411 ADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGI 470
Query: 645 NAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIP 704
KYLGLP K +F F+K+++ +L GW TLS+ G+++L+KS+ A P
Sbjct: 471 QTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDILLKSIAMAFP 530
Query: 705 SYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSF 764
Y M+CF L +LC + ++ F+W DK+ + W +KL KF GG GF+D + F
Sbjct: 531 VYAMTCFRLSKTLCTKLTSVMMDFWWNSVQDKKKIHWIGAQKLMLPKFLGGFGFKDLQCF 590
Query: 765 NIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEG 824
N AL+AK R++T ++LL+Q+ K Y+ D L A +G RPSYAW SIL + G
Sbjct: 591 NQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSILYGRELLVSG 650
Query: 825 GRWKIGDGSQVDILHDQWLPQGVP-VIGSQDLMAEFGVSKVSHLIDHAAKSWKYALVDFI 883
+ IG+G + D W+ P S +M + + KVS LID +++W ++ +
Sbjct: 651 LKKIIGNGENTYVWMDNWIFDDKPRRPESLQIMVDIQL-KVSQLIDPFSRNWNLNMLRDL 709
Query: 884 FHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGY-IFVRKNFLGACSSTYSQPSL 942
F P I+ P+ D+ W T G Y KS Y + R+ QPSL
Sbjct: 710 F-PWKEIQIICQQRPMASRQDSFCWFGTNHGLYTVKSEYDLCSRQVHKQMFKEAEEQPSL 768
Query: 943 PAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLF 1002
PL+ K W ++ P+ K W+V+ + + L RG+ ++ C +C + ET+ H+
Sbjct: 769 -NPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDGCSMCPEKNETLNHIL 827
Query: 1003 VSCPVAQNFWFGSPLSLRVHG-----FSSMEDFLADFFRAADDDALALWQAG-VYALWEM 1056
CP+A+ W +P+ HG F+++ + + L ++ LW+
Sbjct: 828 FQCPLARQVWALTPMQSPNHGFGDSIFTNVNHVIGNCHNTELSPHLRYVSPWIIWILWKN 887
Query: 1057 RNRVVFRD-GEIPVP-VAAMIQRCSMLAAAPVSEMTVVPRPAPLLQATWARPPYGIYKLN 1114
RN+ +F G + + V ++ C A ++ P TW P K N
Sbjct: 888 RNKRLFEGIGSVSLSIVGKALEDCKEWLKA----HELICSKEPTKDLTWIPPLMNELKCN 943
Query: 1115 FDAAVATTGEV-GFGLIVRNMLGEVL----ASAAQYLLHAASAILGEALVFRWSMQLTIQ 1169
A + ++ G +VRN G VL S +Q H + I G + ++++ Q
Sbjct: 944 IGIAWSKKHQMAGVSWVVRNWKGRVLLHSRCSFSQISSHFDAKIKG----WNYAVESMDQ 999
Query: 1170 MEFRRVLFETDCLQLFQLWKKP 1191
+F RV F + + KP
Sbjct: 1000 FKFDRVTFGASTHDIIKAMHKP 1021
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 461 bits (1186), Expect = e-129
Identities = 370/1302 (28%), Positives = 588/1302 (44%), Gaps = 113/1302 (8%)
Query: 1 VLAVYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVA 60
++ VY P + W + D P + GDFN I+ ++ GG+ GR+
Sbjct: 667 LVVVYAAPTASRRSGLWDRLGDVIRSMDGPVVIGGDFNTIVRLDERSGGN----GRLSSD 722
Query: 61 TCA----CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHV 116
+ A +D +L + F G +FTW R + V +RLD L W V H+
Sbjct: 723 SLAFGEWINDHSLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAHARLKWQEASVLHL 782
Query: 117 HRHCSDHSPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTEVPDR 176
SDH+P+ + + +R FRFE WL + KE++ +W + ++ P+
Sbjct: 783 PFLASDHAPLYVQLTPEVSGNRGRRP--FRFEAAWLS-HPGFKELLLTSWNKDIS-TPEA 838
Query: 177 LSDVSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQE 236
L +QEL Q+ ++L +D D +LEQE
Sbjct: 839 LK---------------------------VQELLDLHQSDDLLKKEEELLKDFDVVLEQE 871
Query: 237 EVWWKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDY 296
EV W Q+SR W HGD+NT+FFH RR+RN IE+L+D++GR + + ++ DY
Sbjct: 872 EVVWMQKSREKWFVHGDRNTKFFHTSTIIRRRRNQIEMLQDNDGRWLSNAQELETHAIDY 931
Query: 297 FGGLFTSSNPEGI-EETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGF 355
+ L++ + + + E+ +SE + L +PF+ EVE A+ M KAPG DGF
Sbjct: 932 YKRLYSLDDLDAVVEQLPQEGFTALSEADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGF 991
Query: 356 PTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCN 415
+FYQ+ W+++G+ V+ F + P N L+VLI K++KPE TQFRPISLCN
Sbjct: 992 QPVFYQQGWEVVGESVTKFVMDFFSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCN 1051
Query: 416 VLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMM 475
VLFK ITK + RLK ++ +I Q++F+PGRL DN +VV E H M+++ G G M
Sbjct: 1052 VLFKTITKVMVGRLKGVINKLIGPAQTSFIPGRLSTDNIVVVQEVVHSMRRK-KGVKGWM 1110
Query: 476 TLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLL--- 532
LKLD+ KAYDR+ W L+ L+ G P +WV IM E PS LL
Sbjct: 1111 LLKLDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMK----------CVEGPSMRLLWNG 1160
Query: 533 -LLEAYVRVILFR-------LIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLF 584
+A+ + R +F+ +ER L+ S+ IK++ P +SH+ F
Sbjct: 1161 EKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAAKKWKPIKISQSGPRLSHICF 1220
Query: 585 ADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNV 644
ADD I+FA A+ + + +L + ASGQ ++L+KS++ S+NV ++ + + +
Sbjct: 1221 ADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESGM 1280
Query: 645 NAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIP 704
A + KYLG+P + + F V R +L GWK LS AGR L K+V+ +I
Sbjct: 1281 KATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSIL 1340
Query: 705 SYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSF 764
+ MS LP S ++++ F WG ++K+ +W ++ + +GGLG R +
Sbjct: 1341 VHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATAM 1400
Query: 765 NIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSW----- 819
N AL+AK WR+ +L AQV + Y GD+ S WSS +S
Sbjct: 1401 NKALIAKVGWRVLNDGSSLWAQVVRSKY-KVGDVHDRNWTVAKS-NWSSTWRSVGVGLRD 1458
Query: 820 IFQEGGRWKIGDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSWK--- 876
+ W IGDG Q+ D+WL + P+ + D + +++ ++ A W+
Sbjct: 1459 VIWREQHWVIGDGRQIRFWTDRWLSE-TPI--ADDSIVPLSLAQ---MLCTARDLWRDGT 1512
Query: 877 ----YALVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGA 932
+ F+ + + I + G+ D L W T DG + KS + +
Sbjct: 1513 GWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKSAFAML------- 1565
Query: 933 CSSTYSQPSLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDPLCPVCA 992
++ S + L+ + W+ A R + W VV+ + + RR + +C VC
Sbjct: 1566 -TNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVCQVCR 1624
Query: 993 NEEETVFHLFVSCPVAQNFWFG-SPLSLRVHGFS-SMEDFLADFFR----AADDDALALW 1046
E++ H+ CP W P L+ F+ S+ ++L R D ++
Sbjct: 1625 GGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLRQGLMTEGSDWSTMF 1684
Query: 1047 QAGVYALWEMRNRVVFRDGEIPVPVAAMIQRCSMLAAAPVSEMTVVPRPAPLLQ--ATWA 1104
V+ W+ R +F + + I+ ++ + S + + W
Sbjct: 1685 AMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAVEVSIAYSREVELRLSGLRVNKPIRWT 1744
Query: 1105 RPPYGIYKLNFD-AAVATTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGE------A 1157
P G YK+N D A+ G G ++RN G A + SA L E
Sbjct: 1745 PPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFA-VNIGRCSAPLAELWGVYYG 1803
Query: 1158 LVFRWSMQLTIQMEFRRVLFETDCLQLFQLWKKPPDGRSYLSSIVGDCFMLSRFFDYVDL 1217
L W+ QLT + E D + K LS +V C V +
Sbjct: 1804 LYMAWAKQLT------HLELEVDSEVVVGFLKTGIGETHPLSFLVRLCHNFLSKDWTVRI 1857
Query: 1218 SFVRRRGNSVADFLAGTA-SKYTDMVWLEEVPREVITLIHKD 1258
S V R NS+AD LA A S + +E+P ++ L+ +D
Sbjct: 1858 SHVYREANSLADGLANHAFSLSLGLHVFDEIPISLVMLLSED 1899
>At4g10830 putative protein
Length = 1294
Score = 457 bits (1177), Expect = e-128
Identities = 272/838 (32%), Positives = 426/838 (50%), Gaps = 14/838 (1%)
Query: 4 VYGFPDDRNKHRTWGLIRRFRPGDDIPWLCIGDFNDILSPADKLGGDLPDMGRMQVATCA 63
VYG P +H W + PW+ IGDFN+ILS +K+GG D +
Sbjct: 465 VYGHPCQSERHSLWTHFENLSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNM 524
Query: 64 CSDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDH 123
S C L + G RF+W R TV+ LD A +N L+P ++ + SDH
Sbjct: 525 VSTCDLKDIRSIGDRFSWVGERHSH-TVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDH 583
Query: 124 SPILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLT----EVPDRLSD 179
P+ L RK FRF++ L+ K + W +++ +PD++
Sbjct: 584 KPLFLSLEKTETRKMRP----FRFDKRLLEV-PHFKTYVKAGWNKAINGQRKHLPDQVRT 638
Query: 180 VSGLLGRWGKEQFGDLPRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQEEVW 239
+ + + + +I+ QA L + E I+ +R+L EE +
Sbjct: 639 CRQAMAKLKHKSNLNSRIRINQLQAALDKAMSSVNRTE-RRTISHIQRELTVAYRDEERY 697
Query: 240 WKQRSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFGG 299
W+Q+SR W+K GD+NT FFH R N + +KD+ G D +I ++F
Sbjct: 698 WQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTK 757
Query: 300 LFTSSN-PEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFPTL 358
++ S+ P I + V+E L + + E+ A+ + KAPG DG
Sbjct: 758 VYESNGRPVSIIDFAGFKP-IVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTAR 816
Query: 359 FYQKYWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNVLF 418
FY+ W+I+G DV + IN T + +IPKI PE + +RPI+LCNVL+
Sbjct: 817 FYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLY 876
Query: 419 KIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMTLK 478
KII+K + RLK L I+ +Q+AF+PGRL+ DN ++ +E H +K R M +K
Sbjct: 877 KIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVK 936
Query: 479 LDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLEAYV 538
D+SKAYDRVEW+FL+ ++ GF +W+ IM + + + + IP +
Sbjct: 937 TDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIR 996
Query: 539 RVI-LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARANTQ 597
+ L +F+ + + L+ V + GI++ N P ++HL FADDS+ F ++N +
Sbjct: 997 QGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVR 1056
Query: 598 EAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLGLP 657
+ + ++ YE SGQ IN+ KS ++ V N LK +L + + KYLGLP
Sbjct: 1057 NCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLP 1116
Query: 658 TMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILPDSL 717
G+ K +FN++ +RV K+ W LS AG+E+++KSV ++P Y MSCF LP ++
Sbjct: 1117 EQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNI 1176
Query: 718 CADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWRIY 777
++IE ++ F+W + KR + W +WK+L SK +GGLGFRD FN AL+AK WR+
Sbjct: 1177 VSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMI 1236
Query: 778 TQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQV 835
P +L A++ K YF + +L AKR SY W+S+L + ++G R+ +GDG V
Sbjct: 1237 NNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
>At3g45550 putative protein
Length = 851
Score = 446 bits (1147), Expect = e-125
Identities = 266/805 (33%), Positives = 405/805 (50%), Gaps = 17/805 (2%)
Query: 328 LGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQKYWDIIGDDVSAFCLQVLQGVIPPGM 387
L + F E+ EA+ Q+ KAPG DG FY++ WDI+G+DV +
Sbjct: 45 LTQDFRDSEIFEAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTS 104
Query: 388 INQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPG 447
+N T + +IPKI P+ + +RPI+LCNVL+K+I+K + NRLK L I+ +Q+AF+PG
Sbjct: 105 VNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPG 164
Query: 448 RLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWV 507
R+I DN ++ +E H +K R M +K D+SKAYDRVEW FL+ ++ GF W+
Sbjct: 165 RIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWI 224
Query: 508 SLIMSVSPLLGFPLCLTEIPSRVLLLLEAYVRVI-LFRLIFLSYVERCSQLLLRSVWLLM 566
IM+ + + + + P + + L +F+ + S L+
Sbjct: 225 GWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGD 284
Query: 567 LHGIKVANRAPVISHLLFADDSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSV 626
+ G+++ N AP I+HL FADDS+ F +AN + + + ++ YE SGQ IN+ KS ++
Sbjct: 285 IRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITF 344
Query: 627 SRNVPQNGFNELKQLLNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKEST 686
V + LK LLN+ KYLGLP G+ K +FN++ DRV ++ W
Sbjct: 345 GSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKF 404
Query: 687 LSRAGREVLIKSVVQAIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKK 746
LS AG+E+L+KSV A+P Y MSCF LP + ++IE ++ F+W +KRG+ W +WK+
Sbjct: 405 LSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKR 464
Query: 747 LTRSKFDGGLGFRDFKSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYR 806
L SK +GGLGFRD FN AL+AK WRI P +L A+V K YF ++ AK +
Sbjct: 465 LQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQ 524
Query: 807 PSYAWSSILQSSWIFQEGGRWKIGDGSQVDILHDQWLPQGVPVIGSQDLMAEFGVSKVSH 866
SY WSS+L + ++G R+ IGDG + + D + P D + + +
Sbjct: 525 QSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDNVVDSHPPRPLLTD--EQHNGLSLDN 582
Query: 867 LIDHAAKS--WKYALVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIF 924
L H S W A + + +I +I+L D L+W G+Y +SGY +
Sbjct: 583 LFQHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGY-W 641
Query: 925 VRKNFLGACSSTYSQPSLPAPLWKKFWRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDV 984
+ + T ++P L K W P+ K WR++S LP L RGM +
Sbjct: 642 LSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRI 701
Query: 985 DPLCPVCANEEETVFHLFVSCPVAQNFW--FGSPLSLRVHGFSSMEDFLADFFRAADDDA 1042
DP CP C E E++ H +CP A W +PL +++ED +++ +
Sbjct: 702 DPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTT 761
Query: 1043 LALWQAGV-----YALWEMRNRVVF---RDGEIPVPVAAMIQRCSMLAAAPVSEMTVVP- 1093
+ Q + + +W+ RN VVF R+ V A + L A +P
Sbjct: 762 ITDSQKLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQTQGPRRLPK 821
Query: 1094 RPAPLLQATWARPPYGIYKLNFDAA 1118
R TW +P K NFDA+
Sbjct: 822 RTTAAGNTTWVKPQMPYIKCNFDAS 846
>At2g11240 pseudogene
Length = 1044
Score = 435 bits (1118), Expect = e-122
Identities = 266/823 (32%), Positives = 420/823 (50%), Gaps = 38/823 (4%)
Query: 65 SDCALHVVDFTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDHS 124
++C L+ + +G +W R V RLD AL N AW +P+++ ++ SDH
Sbjct: 2 AECDLYDLRHSGNFLSWRGKR-HDHVVHCRLDRALSNGAWAEDYPASRCIYLCFEGSDHR 60
Query: 125 PILLMCADRRKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTE-VPDRLSDVSGL 183
P+L +K+K+ +FR++ L+ N+E ++ E W T+ V +++S
Sbjct: 61 PLLTHFDLSKKKKKG----VFRYDRR-LKNNDEVTALVQEAWNLYDTDIVEEKISRCRLE 115
Query: 184 LGRWGKEQFGDLPRKISDGQALLQE-LQRKDQTKEVLMAINVAERDLDSLLEQEEVWWKQ 242
+ +W + + + I + + L+E + +D +E+L IN +L + EE +WKQ
Sbjct: 116 IVKWSRAKQQSSQKLIEENRQKLEEAMSSQDHNQELLSTINT---NLLLAYKAEEEYWKQ 172
Query: 243 RSRASWLKHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFGGLFT 302
RSR WL GDKN+ +FH R N V++ ++G ++A I V+ +YF LF+
Sbjct: 173 RSRQLWLALGDKNSGYFHAITRGRTVINKFSVIEKEDGVPEYEEAGILNVISEYFQKLFS 232
Query: 303 SSNPEGIEETTNLVAGRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQK 362
++ EG T + E + EE++ A F +H KAPG DGF F+Q
Sbjct: 233 AN--EGARAAT------IKEAIKPFISPEQNPEEIKSACFSIHADKAPGPDGFSASFFQS 284
Query: 363 YWDIIGDDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNVLFKIIT 422
W +G ++ IN+T + LIPKI + +RPI+LC V +KII+
Sbjct: 285 NWMTVGPNIVLEIQSFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIIS 344
Query: 423 KTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMS 482
K ++ RL+ IL +II + QSAFVP R DN L+ +E H++K + + M +K +MS
Sbjct: 345 KLLSRRLQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMS 404
Query: 483 KAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEIPSRVLLLLEAYVRVI- 541
KAYDR+EW F++ V+Q+MGF +W+S I+ C+T + LL A V
Sbjct: 405 KAYDRIEWDFIKLVMQEMGFHQTWISWILQ---------CITTVSYSFLLNGSAQGAVTP 455
Query: 542 ---------LFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFA 592
L +F+ E S L ++ L G++V+ P ++HLLFADD+I F
Sbjct: 456 ERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFC 515
Query: 593 RANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDK 652
R++ + + L IL YE ASGQ+IN KS ++ SR P + E +Q+L + V K
Sbjct: 516 RSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGK 575
Query: 653 YLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFI 712
YLGLP M G+ K +FN + DR+ ++ W LS AG+ ++KSV+ ++P+Y MSCF
Sbjct: 576 YLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFK 635
Query: 713 LPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKN 772
L SLC I+ ++ F+W DK+ + W +W K+ ++K +GGLGF+D +FN AL+AK
Sbjct: 636 LLVSLCKRIQSALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKL 695
Query: 773 WWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDG 832
WRI P +L ++ G Y L S+ W I + + IG G
Sbjct: 696 SWRIVQSPSCVLVRILLGKYCRTSSFLDCSVTAASSHGWRGICTGKDLIKSQLGKVIGSG 755
Query: 833 SQVDILHDQWLPQGVPVIGSQDLMAEFGVSKVSHLIDHAAKSW 875
+ ++ WL + +F V+ LI KSW
Sbjct: 756 LDTLVWNEPWLSLSTSSTPMGPALEQFKSMTVAQLICQTTKSW 798
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 403 bits (1036), Expect = e-112
Identities = 290/929 (31%), Positives = 439/929 (47%), Gaps = 83/929 (8%)
Query: 74 FTGRRFTWTNNRPKPGTVEERLDYALVNDAWESLWPSNKVCHVHRHCSDHSPILLMCADR 133
F G RFTW + V +RLD L W +C D
Sbjct: 3 FKGNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEALLCPAQN------------VDA 50
Query: 134 RKRKQSKREYMFRFEELWLQKNEECKEVIAETWGRSLTEVPDRLSDVSGLLGRWGKEQFG 193
R+R FRFE WL +E KE++ +W L+ P L+ + L +W KE FG
Sbjct: 51 RRRP-------FRFEAAWLS-HEGFKELLTASWDTGLS-TPVALNRLRWQLKKWNKEVFG 101
Query: 194 DL----PRKISDGQALLQELQRKDQTKEVLMAINVAERDLDSLLEQEEVWWKQRSRASWL 249
++ + +SD +A+ Q+L QT ++LM + ++ D LL QEE W Q+SR L
Sbjct: 102 NIHVRKEKVVSDLKAV-QDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLL 160
Query: 250 KHGDKNTRFFHQKANQRRKRNLIEVLKDDNGREVEDDADIARVLGDYFGGLFTSSNPEGI 309
GD+NT FFH RR+RN IE+LKD R V + + ++ DY+ L++ + +
Sbjct: 161 ALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVV 220
Query: 310 EETTNLVA-GRVSETHLTVLGEPFTREEVEEALFQMHPTKAPGLDGFPTLFYQKYWDIIG 368
T R++ L PFTR+EV A+ M KAPG DG+ +FYQ+ W+ +G
Sbjct: 221 RGTLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVG 280
Query: 369 DDVSAFCLQVLQGVIPPGMINQTLLVLIPKIMKPEHATQFRPISLCNVLFKIITKTIANR 428
+ VS F ++ + + P N LLVL+ K+ KPE TQFRP+SLCNVLFKIITK + R
Sbjct: 281 ESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIR 340
Query: 429 LKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKKRISGRNGMMTLKLDMSKAYDRV 488
LK ++ +I Q++F+PGRL DN +VV E H M+++ GR G M LKLD+ KAYDR+
Sbjct: 341 LKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDRI 399
Query: 489 EWSFLQGVLQKMGFPPSWVSLIM------SVSPLLGFPLCLTEIPSRVLLLLEAYVRVIL 542
W FL L+ G W+ IM +S L + P R L + +
Sbjct: 400 RWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDP-----I 454
Query: 543 FRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARANTQEAECV 602
+F+ +ER + +V I ++ P +SH+ FADD I+FA A+
Sbjct: 455 SPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASV------ 508
Query: 603 LNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLGLPTMIGK 662
Q ++L+KS++ S NV ++ + + + KYLG+P + +
Sbjct: 509 -----------AQKVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKR 557
Query: 663 FKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILPDSLCADIE 722
F V +RV +L GWK +LS AGR L K+V+ +IP + MS +LP SL ++
Sbjct: 558 INKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLD 617
Query: 723 RMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWRIYTQPET 782
++ F WG V+KR SWKK+ R K GGLG R K N AL+AK WR+ +
Sbjct: 618 KVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVS 677
Query: 783 LLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQVDILHDQW 842
L A+V + Y + P WSS +S + G R + G ILH+
Sbjct: 678 LWARVLRRKYKVTD--VHDSSWLVPKATWSSTWRSIGV---GLREGVAKGW---ILHEPL 729
Query: 843 LPQGVPVIGSQDLMA---EFGVSKVSHLIDHAAKSWKYALVDFIFHPATVSHILKIHLPL 899
+ ++ ++L A EF V + + ++ D + H + +L
Sbjct: 730 CTRATCLLSPEELNARVEEFWTEGVGWDMVKLGQCLPRSVTDRL-HAVVIKGVL------ 782
Query: 900 NGSVDTLMWPETVDGNYCSKSGYIFVRKNFLGACSSTYSQPSLPAPLWKKFWRTSAQPRC 959
G D + W T DG++ S Y+ + + S+P + + +K+ W A R
Sbjct: 783 -GLRDRISWQGTSDGDFTVGSAYVLLTQ-------EEESKPCMES-FFKRIWGVIAPERV 833
Query: 960 KEVAWRVVSSLLPIRAALHRRGMDVDPLC 988
+ W V ++ RR + +C
Sbjct: 834 RVFLWLVGQQVIMTNVERVRRHIGDIEVC 862
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 367 bits (943), Expect = e-101
Identities = 219/649 (33%), Positives = 332/649 (50%), Gaps = 50/649 (7%)
Query: 449 LIIDNALVVYECFHFM--KKRISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSW 506
+I DN L+ +E H + KK + + KLD++KA+D++EW F++ ++++MGF W
Sbjct: 1 MITDNILIAHELIHSLHTKKLVQP---FVATKLDITKAFDKIEWGFIEAIMKQMGFSEKW 57
Query: 507 VSLIMSVSPLLGFPLCLTEIPSRVLLLLEAYVRVILFR----------LIFLSYVERCSQ 556
+ IM+ C+T +L+ + R+I R ++L E S
Sbjct: 58 CNWIMT---------CITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSA 108
Query: 557 LLLRSVWLLMLHGIKVANRAPVISHLLFADDSIIFARANTQEAECVLNILSTYERASGQV 616
L+ S+ LHG K + P ISHLLFA DS++F +A +E ++N+L YE+ASGQ
Sbjct: 109 LIQASIKAKQLHGFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQA 168
Query: 617 INLDKSQLSVSRNVPQNGFNELKQLLNVNAVESFDKYLGLPTMIGKFKTRIFNFVKDRVW 676
+N KS + + + +L QLL + E F +YLGLP +G+ KT F+F+ +
Sbjct: 169 VNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMD 228
Query: 677 KKLKGWKESTLSRAGREVLIKSVVQAIPSYVMSCFILPDSLCADIERMVSRFYWGGDVDK 736
+K+ W LS AG+EVLIKS+V AIP+Y MSCF+LP L I + F+W K
Sbjct: 229 QKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVK 288
Query: 737 RGLQWASWKKLTRSKFDGGLGFRDFKSFNIALVAKNWWRIYTQPETLLAQVFKGVYFAQG 796
+ W +W KL K GGL RD K FNIAL+AK WRI QP +L+A+VFK YF +
Sbjct: 289 HKIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKE 348
Query: 797 DLLGAKRGYRPSYAWSSILQSSWIFQEGGRWKIGDGSQVDILHDQWLPQGV--PVIGSQD 854
LL AK + SYAW SIL + + G ++ G+G+ + + D WLP P +G+ D
Sbjct: 349 RLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCD 408
Query: 855 LMAEFGVSKVSHLIDHAAKSWKYALVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDG 914
+ + KVS L+ W L+ + H + HI I + G+ D + W T DG
Sbjct: 409 SI--YSQLKVSDLLIEG--RWNEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDG 464
Query: 915 NYCSKSGYIFVRKNFLGACSSTYSQPSLPAP-------LWKKFWRTSAQPRCKEVAWRVV 967
NY KSGY +RK S SLP+P ++ W+ +A P+ K WR
Sbjct: 465 NYSVKSGYHLLRK------LSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSA 518
Query: 968 SSLLPIRAALHRRGMDVDPLCPVCANEEETVFHLFVSCPVAQNFWFGSPL------SLRV 1021
+ LP L RR + D C C E V HL C V++ W + + SL
Sbjct: 519 HNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMS 578
Query: 1022 HGFSSMEDFLADFFRAADDDALALWQAGVYALWEMRNRVVFRDGEIPVP 1070
+ F+ + + ++A D ++L+ + +W+MRN ++F + +P
Sbjct: 579 NSFNQNLESIQKLNQSARKD-VSLFPFIGWRIWKMRNDLIFNNKRWSIP 626
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 332 bits (852), Expect = 6e-91
Identities = 214/686 (31%), Positives = 327/686 (47%), Gaps = 81/686 (11%)
Query: 348 KAPGLDGFPTLFYQKYWDIIGDDVSAFCLQVL-QGVIPPGMINQTLLVLIPKIMKPEHAT 406
KAPG DGF +FYQ WDI+GD VS F L G +P G N ++VLI K++KPE T
Sbjct: 5 KAPGPDGFQPVFYQDCWDIVGDSVSRFVLDFFASGKLPEGT-NDAIVVLIAKVLKPERIT 63
Query: 407 QFRPISLCNVLFKIITKTIANRLKIILPDIICQTQSAFVPGRLIIDNALVVYECFHFMKK 466
QFRPISLCNVLFK ITKT+ RLK ++ +I Q++F+ GRL DN +++ E H M++
Sbjct: 64 QFRPISLCNVLFKTITKTLVMRLKRVISKLIRPAQASFISGRLAADNIVIMQEAVHSMRR 123
Query: 467 RISGRNGMMTLKLDMSKAYDRVEWSFLQGVLQKMGFPPSWVSLIMSVSPLLGFPLCLTEI 526
+ GR G M LKLD+ KAYDR+ W FL+ L+ + P W+ IM C+TE
Sbjct: 124 K-KGRKGWMLLKLDLEKAYDRIRWEFLEDTLRAVRLPEKWIVWIMQ---------CVTE- 172
Query: 527 PSRVLLLLEAYVRVILFRLIFLSYVERCSQLLLRSVWLLMLHGIKVANRAPVISHLLFAD 586
PS LL E + R W I ++ P +SH+ FAD
Sbjct: 173 PSMSLLWNE--------------------HSIARKDW----KPISLSQGGPKLSHICFAD 208
Query: 587 DSIIFARANTQEAECVLNILSTYERASGQVINLDKSQLSVSRNVPQNGFNELKQLLNVNA 646
D I+FA A+ + + +L + ASGQ ++L+KS++ S NV ++ + +++
Sbjct: 209 DLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFFSENVSRDLGKLISDESGISS 268
Query: 647 VESFDKYLGLPTMIGKFKTRIFNFVKDRVWKKLKGWKESTLSRAGREVLIKSVVQAIPSY 706
KYLG+P + + F + +++ +L GWK LS AGR L K+V+ +IP +
Sbjct: 269 TRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVH 328
Query: 707 VMSCFILPDSLCADIERMVSRFYWGGDVDKRGLQWASWKKLTRSKFDGGLGFRDFKSFNI 766
MS LP S ++++ F WG V +R SWK++ + + +GGLG R + N
Sbjct: 329 TMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNK 388
Query: 767 ALVAKNWWRIYTQPETLLAQVFKGVYFAQGDLLGAKRGYRP--SYAWSSI-LQSSWIFQE 823
AL++K WR+ +L A++ + Y Q GA R S W S+ L +
Sbjct: 389 ALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKVRSVCSSTWRSVALGMREVVIP 448
Query: 824 GGRWKIGDGSQVDILHDQWL-------------PQGVPVIGSQDLMAEFGVSKVSHLIDH 870
G W IGDG ++ D+WL P G + ++DL ++ + +
Sbjct: 449 GLSWVIGDGREILFWMDKWLTNIPLAELLVQEPPAGWKGMRARDLRRNGIGWDMATIAPY 508
Query: 871 AAKSWKYALVDFIFHPATVSHILKIHLPLNGSVDTLMWPETVDGNYCSKSGYIFVRKNFL 930
+ + L F+ T G+ D + W E+ DG + + Y F+ ++
Sbjct: 509 ISSYNRLQLQSFVLDDIT------------GARDRISWGESQDGRFKVSTTYSFLTRD-- 554
Query: 931 GACSSTYSQPSLPAPLWKKF----WRTSAQPRCKEVAWRVVSSLLPIRAALHRRGMDVDP 986
P K+F W +A R + W V + HRR +
Sbjct: 555 ----------EAPRQDMKRFFDRVWSVTAPERVRLFLWLVAQQAIMTNQERHRRHLSTTT 604
Query: 987 LCPVCANEEETVFHLFVSCPVAQNFW 1012
+C VC +E++ H+ CP + W
Sbjct: 605 ICQVCKGAKESIIHVLRDCPAMEGIW 630
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,746,959
Number of Sequences: 26719
Number of extensions: 1326576
Number of successful extensions: 4299
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 3722
Number of HSP's gapped (non-prelim): 238
length of query: 1259
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1148
effective length of database: 8,352,787
effective search space: 9588999476
effective search space used: 9588999476
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0129.4