BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0083.3
(287 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17610 putative non-LTR retroelement reverse transcriptase 77 1e-14
At2g05200 putative non-LTR retroelement reverse transcriptase 74 1e-13
At2g17910 putative non-LTR retroelement reverse transcriptase 72 3e-13
At2g05550 putative non-LTR retroelement reverse transcriptase 67 8e-12
At1g25430 hypothetical protein 64 1e-10
At4g12180 putative reverse transcriptase 63 2e-10
At2g45230 putative non-LTR retroelement reverse transcriptase 62 3e-10
At4g11710 putative protein 62 5e-10
At1g30390 hypothetical protein 62 5e-10
At2g31080 putative non-LTR retroelement reverse transcriptase 61 6e-10
At1g51750 hypothetical protein 60 1e-09
At3g45550 putative protein 60 1e-09
At3g44650 putative protein 60 2e-09
At2g15540 putative non-LTR retroelement reverse transcriptase 60 2e-09
At1g23990 reverse transcriptase, putative 59 3e-09
At2g28980 putative non-LTR retroelement reverse transcriptase 59 4e-09
At1g47850 hypothetical protein 58 5e-09
At1g24640 hypothetical protein 58 7e-09
At2g23880 putative non-LTR retroelement reverse transcriptase 57 9e-09
At3g31420 hypothetical protein 57 1e-08
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 76.6 bits (187), Expect = 1e-14
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 10/184 (5%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSY 125
V W ++ PK GGL +R ++ N++LL K +W+ L +R+F KY +
Sbjct: 294 VAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDA 353
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCT-SFWYSDWTGLGKLCALVPFVHISDTA 184
+ T SSY WK ++ ++ GL + +G W +W L V +
Sbjct: 354 KATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQ 413
Query: 185 LTISDVWVEGSWNLSMLYTELPDPYKPTITSMQGPSHETVDDCWVW-NSNPAGYSCSDAY 243
L +SD+ +EG WN +L + P I +++ PS +D W ++ YS Y
Sbjct: 414 LKVSDLLIEGRWNEDLLCKLIHQNDIPHIRAIR-PSITGANDAITWIYTHDGNYSVKSGY 472
Query: 244 QWLR 247
LR
Sbjct: 473 HLLR 476
Score = 27.3 bits (59), Expect = 9.7
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 11 SVMGPVLTPVLSEALCLRWAIGMARDLGFRHVWFDTDCLVLFDYWRRSDEG--RSHLGTV 68
S + P TP+ +EA L+ A+ + LG+ + F D LF R+ S + T
Sbjct: 685 SSIPPTSTPLEAEAEALKLAMIHLQRLGYEDIIFHGDVAALFQPITRTTHSCEYSPIATF 744
Query: 69 VRDCVN 74
+RD N
Sbjct: 745 LRDIEN 750
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 73.6 bits (179), Expect = 1e-13
Identities = 51/168 (30%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSY 125
V W ++ PKN GGLG R N SLL KL W+ L SRI + KY SS
Sbjct: 734 VAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMEC 793
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGLGKLCALVPFVHISDTA 184
+L S+ W+ ++ +L++GL + I +G S W W + K P V I
Sbjct: 794 KLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISK-----PLVPIGPAL 848
Query: 185 LTISDVWVEG-------SWNLSMLYTELPDPYKPTITSMQGPSHETVD 225
D+ V W+ + + LP+ Y+ I + PS VD
Sbjct: 849 REHQDLRVSALINQNTLQWDWNKIAVILPN-YENLIKQLPAPSSRGVD 895
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 72.0 bits (175), Expect = 3e-13
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 16/231 (6%)
Query: 50 VLFDYWRRSDEGRSHLGTVVRDCVNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK--- 106
V+ D+W S + + + ++W+++ LPK+QGG G + + N +LL K AW+
Sbjct: 799 VMMDFWWNSMQQKRKI-----HWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQ 853
Query: 107 ----LGSRIFITKYLKGSSIFSYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCTSF-W 161
L SR+F ++Y S S SY W+ ++ +L GL I +G +F W
Sbjct: 854 EKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVW 913
Query: 162 YSDWTGLGKLCALVPFVHISDTALTISDVW--VEGSWNLSMLYTELPDPYKPTITSMQGP 219
W G + + L +S + +WNL+ML P I +
Sbjct: 914 TDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPL 973
Query: 220 SHETVDDCWVWNSNPAGYSCSDAYQWLRDWTVFRVLSVLGSMSSIISLFEE 270
+ CW+ + N YS Y++L R+ S+ SLF++
Sbjct: 974 FFKEDSFCWLHSHNGL-YSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDK 1023
>At2g05550 putative non-LTR retroelement reverse transcriptase
Length = 977
Score = 67.4 bits (163), Expect = 8e-12
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 9/108 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSR------IFITKYLKGSSIFSY- 125
V+W + PK +GGLG+RS +E+N K+ WK+ S +I K+L + F +
Sbjct: 817 VSWDDVCKPKKEGGLGLRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFWFV 876
Query: 126 -ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGLGKL 171
E T S++W+ L+K ++ ++ G CTSFWY DW+ +G++
Sbjct: 877 KENTTLGSWMWRKLIKFREKAKNFCKVEVNKGNCTSFWYDDWSNMGQM 924
>At1g25430 hypothetical protein
Length = 1213
Score = 63.5 bits (153), Expect = 1e-10
Identities = 52/210 (24%), Positives = 91/210 (42%), Gaps = 24/210 (11%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSRIFITK-----------YLKGSS 121
V+W + LPK++GGLG+R E N +L +L W R+F+ K +L S
Sbjct: 853 VSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIW----RLFVAKDSLWADWQHLHHLSRGS 908
Query: 122 IFSYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKLCALVPFVHI 180
++ E S S+ WK L+ + L + +G +WY +WT LG L ++ +
Sbjct: 909 FWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGPLFRIIGDIGP 968
Query: 181 SDTAL----TISDVWVEGSWNLSMLYTELPDPYKPTITSMQGPSHETVD-DCWVWNSNPA 235
S + ++ + E W L + + + ++ PS D D + W+ N
Sbjct: 969 SSLRVPLLAKVASAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPSTAQEDVDRYEWSVN-- 1026
Query: 236 GYSCSDAYQWLRDWTVFRVLSVLGSMSSII 265
G+ C + + W R + + S +S I
Sbjct: 1027 GFLC-QGFSAAKTWEAIRPKATVKSWASSI 1055
>At4g12180 putative reverse transcriptase
Length = 662
Score = 62.8 bits (151), Expect = 2e-10
Identities = 34/107 (31%), Positives = 58/107 (53%), Gaps = 8/107 (7%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKL---GSRIFI----TKYLKGSSIFSY 125
+ W+ + PK +GGLG++S +E+N KL W++ G +++ T LK ++ +S+
Sbjct: 378 IAWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSF 437
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCT-SFWYSDWTGLGKL 171
S++WK L+K + I +G T SFWY DW+ G+L
Sbjct: 438 RSASQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYDDWSSKGRL 484
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 62.4 bits (150), Expect = 3e-10
Identities = 50/211 (23%), Positives = 92/211 (42%), Gaps = 31/211 (14%)
Query: 54 YWRRSDEGRSHLGTVVRDCVNWK---QIVLPKNQGGLGVRSTRESNVSLLGKLAWK---- 106
+W+ EGR ++WK + PK GGLG + N++LLGK W+
Sbjct: 826 WWKNKKEGRG---------LHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITE 876
Query: 107 ---LGSRIFITKYLKGSSIFSYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCT-SFWY 162
L +++F ++Y S + L S+ WK + +A +++ G+ I +G T + W
Sbjct: 877 KDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWT 936
Query: 163 SDWTGL--GKLCALVPFVHI-----SDTALTISDVWVEG--SWNLSMLYTELPDPYKPTI 213
W G K V H+ +++ + D+ + WN +++ PD + I
Sbjct: 937 DPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENI 996
Query: 214 TSMQGPSHETVDDCWVWNSNPAG-YSCSDAY 243
+++ P + D + W + +G YS Y
Sbjct: 997 LALR-PGGKETRDRFTWEYSRSGHYSVKSGY 1026
>At4g11710 putative protein
Length = 473
Score = 61.6 bits (148), Expect = 5e-10
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSRI--FITKYLKGSSIFSY----- 125
+ W + PK +GGLG+RS +E+N KL W++ S K+++ S +
Sbjct: 109 ITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAV 168
Query: 126 -ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKL 171
E T S++W+ ++K + R I++G TSFWY DW+ LG+L
Sbjct: 169 RENTSLGSWMWRKILKFRDIARTLCKVEINNGARTSFWYDDWSDLGRL 216
>At1g30390 hypothetical protein
Length = 504
Score = 61.6 bits (148), Expect = 5e-10
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSRI--FITKYLKGS---SIFSY-- 125
+ W + PK +GGLG+RS +E+N KL W++ S K+++ S +F +
Sbjct: 190 IAWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAV 249
Query: 126 -ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKL 171
E T S++W+ ++K + R I++G TSFWY DW+ LG+L
Sbjct: 250 RENTSLGSWMWRKILKFRDIARTLCKVEINNGAQTSFWYDDWSDLGRL 297
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 61.2 bits (147), Expect = 6e-10
Identities = 46/157 (29%), Positives = 74/157 (46%), Gaps = 13/157 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSY 125
++W++I PK +GG+G+RS R+ N +L+ K+ W+ L +R+ KY G +
Sbjct: 702 LSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTS 761
Query: 126 ELTGSS--SYVWKGL-VKAFSVLRDGLSFAIHDGCT-SFWYSDWTGLGKLCAL-VPFVHI 180
L S W+ + V V+ G+ + DGCT FW W L L +
Sbjct: 762 WLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVELGTDMIPE 821
Query: 181 SDTALTISDVWVEGS-WNLSMLYTELPDPYKPTITSM 216
+ +D W+ GS WNL +L LP+ K + S+
Sbjct: 822 GERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSV 858
>At1g51750 hypothetical protein
Length = 629
Score = 60.5 bits (145), Expect = 1e-09
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSR---IFI----TKYLKGSSIFSY 125
V+W I PK +GGLG+RS E+NV + KL W++ S +++ LK S +S
Sbjct: 265 VSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSL 324
Query: 126 ELTGS-SSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKL 171
S S++WK ++K + +++G TSFW+ +W+G+G L
Sbjct: 325 TPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHL 372
>At3g45550 putative protein
Length = 851
Score = 60.1 bits (144), Expect = 1e-09
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSY 125
V WK++ K +GGLG R + N +LL K AW+ L +R+ +Y K +SI
Sbjct: 460 VAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDA 519
Query: 126 ELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCT 158
+ SY W L+ ++LR G + I DG T
Sbjct: 520 KTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKT 552
>At3g44650 putative protein
Length = 762
Score = 59.7 bits (143), Expect = 2e-09
Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 15/133 (11%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKL---GSRIFITKYLKGSSI------F 123
++W Q+ PK++GGLG+RS +E+N KL W++ G +++ K+++ + +
Sbjct: 413 ISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWV-KWVEHNLLKREIFWI 471
Query: 124 SYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGLGKLCALVPFVHISD 182
E S++WK ++K V + + +G TSFW+ DW+ LG+L + D
Sbjct: 472 VKENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDWSLLGRLIDVAGIRGTID 531
Query: 183 ----TALTISDVW 191
++++D W
Sbjct: 532 MGISRTMSVADAW 544
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 59.7 bits (143), Expect = 2e-09
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 17/210 (8%)
Query: 50 VLFDYWRRSDEGRSHLGTVVRDCVNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK--- 106
V+ ++W ++ E + + + W ++ P + GGLG R+ E N+ LL K W+
Sbjct: 701 VVANFWWKTREESNGIHWIA-----WDKLCTPFSDGGLGFRTLEEFNLVLLAKQLWRLIR 755
Query: 107 ----LGSRIFITKYLKGSSIFSYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFW 161
L SR+ +Y + S S+ W+ ++ A +L GL I G T W
Sbjct: 756 FPNSLLSRVLRGRYFRYSDPIQIGKANRPSFGWRSIMAAKPLLLSGLRRTIGSGMLTRVW 815
Query: 162 YSDWTGLGKLCALVPFVHISDTALTISDVW--VEGSWNLSMLYTELPDPYKPTITSMQGP 219
W ++I DT L ++D+ V W L L EL DP + P
Sbjct: 816 EDPWIPSFPPRPAKSILNIRDTHLYVNDLIDPVTKQWKLGRL-QELVDPSDIPLILGIRP 874
Query: 220 SHETVDDCWVWNSNPAG-YSCSDAYQWLRD 248
S D + W+ +G Y+ Y RD
Sbjct: 875 SRTYKSDDFSWSFTKSGNYTVKSGYWAARD 904
>At1g23990 reverse transcriptase, putative
Length = 657
Score = 58.9 bits (141), Expect = 3e-09
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSRI------FITKY-LKGSSIFSY 125
V W + PK +GGLG+RS +E N KL W++ S +I +Y LK + +S
Sbjct: 309 VCWGDVCKPKQEGGLGLRSLKEMNEVSCLKLIWRIVSHTNSLWVRWIEQYLLKHDTFWSV 368
Query: 126 E-LTGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGLGKLCALV---PFVHI 180
+ T S++W+ L+K + + + +G +FWY +W+ LG L LV + +
Sbjct: 369 QTTTNMGSWMWRKLLKYRDIAKQFCKVEVKNGKRVAFWYENWSNLGVLNDLVGDRGRIDL 428
Query: 181 SDTA-LTISDVW 191
T+ +T+SD W
Sbjct: 429 GITSHMTLSDAW 440
>At2g28980 putative non-LTR retroelement reverse transcriptase
Length = 1529
Score = 58.5 bits (140), Expect = 4e-09
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSR--------IFITKYLKGSSIFS 124
+ W I PK +GGLG++S E+N KL W+L S I+ KG+ +
Sbjct: 1157 IAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSA 1216
Query: 125 YELTGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGLGKLCALVPFVHISDT 183
E + S++WK L+K + + + +G TSFWY W+ LG+L + + D
Sbjct: 1217 NERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLGRLLDITGTRRVIDL 1276
Query: 184 ALTI 187
+ +
Sbjct: 1277 GIPL 1280
>At1g47850 hypothetical protein
Length = 799
Score = 58.2 bits (139), Expect = 5e-09
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGSR------IFITKYL--KGSSIFS 124
+ W + K +GGLG++S E+N KL W+L SR ++ Y+ KGS +
Sbjct: 433 ITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSA 492
Query: 125 YELTGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGLGKL 171
+ + S++WK L+K V + I G TSFWY +W+ LG+L
Sbjct: 493 NDRSSLGSWMWKKLLKYRDVAKSMCKVEIKSGSSTSFWYDNWSQLGQL 540
>At1g24640 hypothetical protein
Length = 1270
Score = 57.8 bits (138), Expect = 7e-09
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 28/191 (14%)
Query: 74 NWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSYE 126
+W+++ LPK+ GGLG R + N +LL K AW+ L SR+ ++Y +
Sbjct: 803 SWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDAA 862
Query: 127 LTGSSSYVWKGLVKAFSVLRDGLSFAIHDGCTSF-WYSDWTGLGKLCALVPFVHISDTAL 185
L+ S+ W+ ++ +L GL + DG + F W W A I D L
Sbjct: 863 LSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNLIYDVTL 922
Query: 186 TISDVW--VEGSWNLSMLY-TELPD------PYKPTITSMQGPSHETVDDCWVWNSNPAG 236
+ + G W+ +L+ LP+ KP I+ D +VW N +G
Sbjct: 923 KVKALLNPRTGFWDEEVLHDLFLPEDILRIKAIKPVISQA---------DFFVWKLNKSG 973
Query: 237 -YSCSDAYQWL 246
+S AY WL
Sbjct: 974 DFSVKSAY-WL 983
>At2g23880 putative non-LTR retroelement reverse transcriptase
Length = 1216
Score = 57.4 bits (137), Expect = 9e-09
Identities = 40/134 (29%), Positives = 66/134 (48%), Gaps = 17/134 (12%)
Query: 73 VNWKQIVLPKNQGGLGVRSTRESNVSLLGKLAWKLGS----------RIFITKYLKGSSI 122
V+W +I PK +GGLG++S RE+N KL W+L S R+ + K SI
Sbjct: 581 VSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSI 640
Query: 123 FSYELTGSSSYVWKGLVKAFSVLRDGLSFAIHDGC-TSFWYSDWTGLGKLCALVPFVHIS 181
++ G S++W+ L+K V + +++G TSFW+ +W+ G L L
Sbjct: 641 GTHSTLG--SWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLINLTGARGAI 698
Query: 182 DTA----LTISDVW 191
D +T+++ W
Sbjct: 699 DMGISRHMTLAEAW 712
>At3g31420 hypothetical protein
Length = 1491
Score = 56.6 bits (135), Expect = 1e-08
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 75 WKQIVLPKNQGGLGVRSTRESNVSLLGKLAWK-------LGSRIFITKYLKGSSIFSYEL 127
WK++ +PK +GGLG + N++LLGK W L +R+ +Y +++ +
Sbjct: 999 WKRMSIPKKEGGLGFKELENFNLALLGKQTWHLLQHPNCLMARVLRGRYFPETNVMNAVQ 1058
Query: 128 TGSSSYVWKGLVKAFSVLRDGLSFAIHDG-CTSFWYSDWTGL 168
+S+VWK ++ ++L+ GL + DG + W W L
Sbjct: 1059 GRRASFVWKSILHGRNLLKKGLRCCVGDGSLINAWLDPWLPL 1100
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.136 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,048,851
Number of Sequences: 26719
Number of extensions: 308889
Number of successful extensions: 758
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 92
length of query: 287
length of database: 11,318,596
effective HSP length: 98
effective length of query: 189
effective length of database: 8,700,134
effective search space: 1644325326
effective search space used: 1644325326
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0083.3