BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0022.14
(334 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54810 unknown protein 32 0.37
At2g18940 putative salt-inducible protein 31 0.83
At3g63210 unknown protein 30 1.8
At5g49290 disease resistance protein-like 30 2.4
At3g60850 unknown protein 29 3.1
At5g03410 histidyl-tRNA synthetase - like protein 28 5.4
At4g39010 putative endo-1,4-beta-glucanase 28 7.0
At2g24520 putative plasma membrane proton ATPase 28 7.0
matR -mitochondrial genome- maturase 28 9.2
At5g54630 unknown protein 28 9.2
At2g40060 unknown protein 28 9.2
At2g13270 pseudogene 28 9.2
>At3g54810 unknown protein
Length = 322
Score = 32.3 bits (72), Expect = 0.37
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Query: 140 DSPPPMGSTVHAITSTSFFDFFYYPLDAFSSKQLMTP-------DQSHSFGGVTLVTKKE 192
DS P + +T H + F ++ SS +L P ++ SF TLV KKE
Sbjct: 40 DSFPTIWTTHHDTWPAASDPLFSSNTNSDSSPELYVPFEDIVKVERPPSFVEETLVEKKE 99
Query: 193 IKRKNSYDSTPTLILSRGAQSVSPQHSFRQVSQTVDTV-LHNPPRHLESSSPRRVNHREP 251
+ DS+ + R + VS S SQT +T L P +H PR R P
Sbjct: 100 DSFSTNTDSSSSHSQFRSSSPVSVLESSSSSSQTTNTTSLVLPGKH---GRPRTKRPRPP 156
Query: 252 VR 253
V+
Sbjct: 157 VQ 158
>At2g18940 putative salt-inducible protein
Length = 822
Score = 31.2 bits (69), Expect = 0.83
Identities = 24/83 (28%), Positives = 40/83 (47%), Gaps = 5/83 (6%)
Query: 136 VITLDSPPPMGSTVHAITSTSFFDFFYYPLDAFSSKQLMTPD-QSHSFGGVTLVTKKEIK 194
++ L SPPP H+ ++ + F D+ SSK ++ + ++ G + L+ KKE+
Sbjct: 55 LVHLSSPPPR----HSNSAAARFPSLEVSTDSSSSKPILGIEIENERNGSLKLLCKKEVV 110
Query: 195 RKNSYDSTPTLILSRGAQSVSPQ 217
NS P LSR SV +
Sbjct: 111 LVNSIVEQPLTGLSRFFDSVKSE 133
>At3g63210 unknown protein
Length = 263
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/87 (29%), Positives = 39/87 (43%), Gaps = 13/87 (14%)
Query: 129 TKQPISLVITLDSPPPMGSTVHAITSTSFFDFFYYPLDAFSSKQLMTPDQSHSFGGVTLV 188
TK+ SL++ PPP +T H S F + F+SK +MTP S +LV
Sbjct: 12 TKKQTSLLMADQPPPPKPNTCHCSPSLFSSPKFRF----FTSKMMMTPFDS----DFSLV 63
Query: 189 TKKEIKRKNSYDSTPTLILSRGAQSVS 215
+ I N P++ S+ + VS
Sbjct: 64 SPTSILEAN-----PSIFSSKNPKPVS 85
>At5g49290 disease resistance protein-like
Length = 888
Score = 29.6 bits (65), Expect = 2.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 59 LGKQHGFIIVITRSDNGGLKRKTFMILGCERCDKYVPYKEVLKHQSTGTKKCYC 112
LG HGF I + L+ K F++ CE C+ Y VL + TK C
Sbjct: 4 LGHLHGFSSCIEKERKALLELKKFVMSRCEECE----YDSVLPTWTNDTKSDCC 53
>At3g60850 unknown protein
Length = 648
Score = 29.3 bits (64), Expect = 3.1
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 42 TDKVFASRDEILEWARNLGKQHGFIIVITRSDNGGLKRKTFMI----LGCERCDKYVPYK 97
T+ + E+ + + L +H ++ I + ++ K FM C R + V K
Sbjct: 269 TESLDVPAKEVPDRLQQLAAKHKVVLCIRQKY---IRYKPFMAEVKDYACHRAGEPVSIK 325
Query: 98 E--VLKHQSTGTKKCYCPFRLRA 118
+ +LK + +K+C C FR+RA
Sbjct: 326 KSRILKREPYQSKRCGCGFRIRA 348
>At5g03410 histidyl-tRNA synthetase - like protein
Length = 333
Score = 28.5 bits (62), Expect = 5.4
Identities = 17/45 (37%), Positives = 20/45 (43%)
Query: 219 SFRQVSQTVDTVLHNPPRHLESSSPRRVNHREPVRHGHLTMGVVR 263
+ + QTVD VL + P RVN R PV G L V R
Sbjct: 270 ALKDKGQTVDLVLESKPLKWVFKRAARVNARRPVLVGKLVRSVSR 314
>At4g39010 putative endo-1,4-beta-glucanase
Length = 497
Score = 28.1 bits (61), Expect = 7.0
Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 6/57 (10%)
Query: 199 YDSTPTLILSRGAQSVSPQHSFRQVSQTVDTVLHNPPRHLE------SSSPRRVNHR 249
Y S +L L+ G +V P + R + VD +L N P L P+R++HR
Sbjct: 360 YLSRSSLSLNCGTLTVPPDYLRRLAKKQVDYILGNNPMGLSYMVGYGERYPKRIHHR 416
>At2g24520 putative plasma membrane proton ATPase
Length = 931
Score = 28.1 bits (61), Expect = 7.0
Identities = 13/61 (21%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 13 EEKPLTGKLVRVEDVQD-EPLAVDYTQSFTTDKVFASRDEILEWARNLGKQHGFIIVITR 71
++ +T ++ +E++ + L D T + T +K+ ++ + +A+ +GK+H F++
Sbjct: 288 QQGAITKRMTAIEEMAGMDVLCCDKTGTLTLNKLTVDKNLVEVFAKGVGKEHVFLLAARA 347
Query: 72 S 72
S
Sbjct: 348 S 348
>matR -mitochondrial genome- maturase
Length = 672
Score = 27.7 bits (60), Expect = 9.2
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 194 KRKNSYDSTPTLILSRGAQSVSPQHSFRQVSQTVDTVLHNPPRHLESSSPRRVNHREPVR 253
K +N DS P L++G Q+++T+ T P+ S V H +R
Sbjct: 416 KFRNLGDSIPIKQLTKGMSKTGSLQDGVQLAETLGTAGVRSPQ--VSVLWGTVKH---IR 470
Query: 254 HGHLTMGVVRQSTHRRREGQLQRIILTSINHTRQLSQY 291
G + + S +Q+++ S H R+LS Y
Sbjct: 471 QGSRGISFLHSSGRSNASSDVQQVVSRSGTHARKLSLY 508
>At5g54630 unknown protein
Length = 472
Score = 27.7 bits (60), Expect = 9.2
Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 29/107 (27%)
Query: 230 VLHNPPRHLES---SSPRRVNHRE---PVRHGHLTMGVVRQSTHRRREGQLQRIILTSIN 283
V+H RH E SSPR + E P+ H +IL+ N
Sbjct: 89 VIHGSKRHFEKPPISSPRSIGSNEFLNPITH---------------------EVILS--N 125
Query: 284 HTRQLSQYACCMNEMPVDKMHSGGMGINGSALTPATVGPFRPACLLH 330
T +L PV SGG G G+ + VG RP +H
Sbjct: 126 STCELKITGVGDMASPVGAADSGGGGGGGNGRSTTYVGMLRPGTPMH 172
>At2g40060 unknown protein
Length = 258
Score = 27.7 bits (60), Expect = 9.2
Identities = 16/58 (27%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Query: 185 VTLVTKKEIKRKNSYDSTPTLILSRGAQSVSPQHSFRQVSQTVDTVLHNPPRHLESSS 242
V + K+ K++ PT+ + +G + P R + Q + + HNPP HL+ +S
Sbjct: 176 VPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTR-MRQILVKLKHNPPSHLKLTS 232
>At2g13270 pseudogene
Length = 378
Score = 27.7 bits (60), Expect = 9.2
Identities = 20/82 (24%), Positives = 33/82 (39%), Gaps = 5/82 (6%)
Query: 165 LDAFSSKQLMTPDQSHSFGGVTLVTKKEIKRKNSY---DSTPTLILSRGAQSVSPQHSFR 221
+D ++ +S V++ T + R+ S +S P G ++S S
Sbjct: 200 IDRIAALNCQHAKESRVVAQVSIDTTTRVDRQTSLVEEESCPIATFQAGITAISS--STT 257
Query: 222 QVSQTVDTVLHNPPRHLESSSP 243
S +LH PP+ L SSP
Sbjct: 258 VTSHNAPLILHPPPKRLRYSSP 279
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,550,767
Number of Sequences: 26719
Number of extensions: 311382
Number of successful extensions: 769
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 12
length of query: 334
length of database: 11,318,596
effective HSP length: 100
effective length of query: 234
effective length of database: 8,646,696
effective search space: 2023326864
effective search space used: 2023326864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0022.14