TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0348.15
         (242 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~...    67  5e-12
TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far...    67  8e-12
TC83834 similar to PIR|G96565|G96565 F6D8.26 [imported] - Arabid...    38  0.003
TC89654 weakly similar to PIR|T05644|T05644 hypothetical protein...    38  0.004
CA917189 similar to PIR|T05645|T05 hypothetical protein F20D10.3...    36  0.012
TC78582 similar to GP|10177259|dbj|BAB10727. tyrosine aminotrans...    31  0.49
TC85809 similar to PIR|T09943|T09943 probable 12-oxophytodienoat...    29  1.9
AL375901 similar to GP|9759134|dbj mutator-like transposase-like...    29  1.9
TC85812 similar to GP|18650650|gb|AAL75894.1 At1g76680/F28O16_5 ...    28  3.2
AL381803                                                               28  4.2
TC86058 similar to GP|15912261|gb|AAL08264.1 AT4g27720/T29A15_21...    27  5.5
TC81343 homologue to GP|3336924|emb|CAB06807.1 signal peptidase ...    27  5.5
TC76450 similar to GP|17065130|gb|AAL32719.1 putative protein {A...    27  7.1
BI309506 similar to GP|12597784|gb pinhead-like protein {Arabido...    27  9.3

>AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~similar to
           Arabidopsis thaliana F20D10.300, partial (11%)
          Length = 662

 Score = 67.4 bits (163), Expect = 5e-12
 Identities = 40/143 (27%), Positives = 67/143 (45%), Gaps = 5/143 (3%)
 Frame = +1

Query: 103 VVIMDCTYKTNKFQIPLLEMVGLTSTGLTYSIAFCYMTRERTPDYVWAL----ECMKSLL 158
           V+  D TYK NK+  PL    G      T       +  E    Y W L    ECM++  
Sbjct: 4   VLAFDTTYKKNKYNYPLCIFSGCNHHSQTIIFGVALLEDETIESYKWVLNRFLECMEN-- 177

Query: 159 ADPARLPGVIVTDRELALLSAVRNIFPGATHLLCLFHINKNVEAKCKLWVDTTDFKALEM 218
               + P  +VTD + ++  A++ +FP A+H LC +H++KN +   K        K   +
Sbjct: 178 ----KFPKAVVTDGDGSMREAIKQVFPDASHRLCAWHLHKNAQENIK--------KTPFL 321

Query: 219 QKWNEVVYAE-TTTQFEEEWRDM 240
           + + + +Y+  T  QFE+ W ++
Sbjct: 322 EGFRKAMYSNFTPEQFEDFWSEL 390


>TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far-red
           impaired response protein {Oryza sativa}, partial (7%)
          Length = 1244

 Score = 66.6 bits (161), Expect = 8e-12
 Identities = 38/127 (29%), Positives = 58/127 (44%), Gaps = 4/127 (3%)
 Frame = +2

Query: 78  EDSGVIMELFWSHPNAIKLFNTFPHVVIMDCTYKTNKFQIPLLEMVGLTSTGLTYSIAFC 137
           +D   I  LFW+       +  F  V+ +D TY T+K+ +PL+  VG+   G T  +   
Sbjct: 791 DDKRNIQNLFWADARCRAAYEYFGEVITLDTTYLTSKYDLPLVPFVGVNHHGQTILLGCA 970

Query: 138 YMTRERTPDYVWA----LECMKSLLADPARLPGVIVTDRELALLSAVRNIFPGATHLLCL 193
            ++        W     LECM          P  I+T+ + A+ +A+   FP A H  CL
Sbjct: 971 ILSNLDAKTLTWLFTRWLECMH------GHAPNGIITEEDKAMKNAIEVAFPKARHRWCL 1132

Query: 194 FHINKNV 200
           +HI K V
Sbjct: 1133WHIMKKV 1153


>TC83834 similar to PIR|G96565|G96565 F6D8.26 [imported] - Arabidopsis
           thaliana, partial (24%)
          Length = 1032

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 19/71 (26%), Positives = 30/71 (41%)
 Frame = +3

Query: 79  DSGVIMELFWSHPNAIKLFNTFPHVVIMDCTYKTNKFQIPLLEMVGLTSTGLTYSIAFCY 138
           D G +    W    +      F  V+  D TY  NK++IPL+ +VG+   G +  +    
Sbjct: 768 DEGHLRNALWVDAKSRAACGYFSDVIYFDNTYLVNKYEIPLVALVGINHHGQSVLLGCGL 947

Query: 139 MTRERTPDYVW 149
           +  E    Y W
Sbjct: 948 LAGEIIESYKW 980


>TC89654 weakly similar to PIR|T05644|T05644 hypothetical protein F20D10.290
           - Arabidopsis thaliana, partial (65%)
          Length = 1358

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 62  LKKLAEANYVHFKRHEED-SGVIMELFWSHPNAIKLFNTFPHVVIMDCTYKTNKFQIPLL 120
           LK++   N+  F   + D       +FW+       ++ F   VI D TYKTN++++P  
Sbjct: 143 LKRMRAENHAFFYAVQSDVDNAGGNIFWADETCRTNYSYFGDTVIFDTTYKTNQYRVPFA 322

Query: 121 EMVGLTSTG 129
              G    G
Sbjct: 323 SFTGFNHHG 349


>CA917189 similar to PIR|T05645|T05 hypothetical protein F20D10.300 -
           Arabidopsis thaliana, partial (12%)
          Length = 312

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 157 LLADPARLPGVIVTDRELALLSAVRNIFPGATHLLCLFHINKNVEAKCK-LWVDTTDFKA 215
           L A   R P  I TD +  + SA+  +FP   H  C +HI K  + K   +++   +F+A
Sbjct: 1   LTAMSGRPPLSITTDHDSVIQSAIMQVFPDTRHRFCKWHIFKQCQEKLSHIFLQFPNFEA 180

Query: 216 LEMQKWNEVVYAETTTQFEEEW 237
            E  K   V   ++  +FE  W
Sbjct: 181 -EFHKC--VNLTDSIDEFESCW 237


>TC78582 similar to GP|10177259|dbj|BAB10727. tyrosine aminotransferase
            {Arabidopsis thaliana}, partial (87%)
          Length = 1788

 Score = 30.8 bits (68), Expect = 0.49
 Identities = 18/70 (25%), Positives = 33/70 (46%), Gaps = 1/70 (1%)
 Frame = +2

Query: 7    VQVDSMNNNWVPPRHMLATLKENNPGNLSTITQVYNRIKKVKELDCGPLTEMQYLLKK-L 65
            + + S++  W+ P   L     N+P       +V  RIKK  +L  GP T +Q  + + +
Sbjct: 1055 ITLGSLSKRWIVPGWRLGWFVTNDPSGTFRKPKVVERIKKYFDLLGGPATFIQAAVPRII 1234

Query: 66   AEANYVHFKR 75
             +   V F++
Sbjct: 1235 TQTEEVFFRK 1264


>TC85809 similar to PIR|T09943|T09943 probable 12-oxophytodienoate reductase
           (EC 1.3.1.42) - Madagascar periwinkle, partial (94%)
          Length = 1438

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 22/85 (25%), Positives = 37/85 (42%), Gaps = 5/85 (5%)
 Frame = +2

Query: 78  EDSGVIMELFWSHPNAIKLFNTFPHVVIMDCTYK-----TNKFQIPLLEMVGLTSTGLTY 132
           E+S  ++ELFW H     L  TF ++++   T++     T  F  P L +      G+  
Sbjct: 110 ENSI*LIELFWHHSQDKDLMATFHNLMLSSITHREPPALTEVFS*PKLPVSLTPLKGIQI 289

Query: 133 SIAFCYMTRERTPDYVWALECMKSL 157
              F   +  R  + +W L  +K L
Sbjct: 290 RQVFGLKSMSRHGNPLWMLFMLKVL 364


>AL375901 similar to GP|9759134|dbj mutator-like transposase-like protein
           {Arabidopsis thaliana}, partial (27%)
          Length = 493

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 184 FPGATHLLCLFHINKNVEAKCKLWVDTTDFKALEMQKWNEVVYAETTTQFEEEWRDMCD 242
           FP A+H  CL ++++N         DT     L    WN  VYA T  +FE +  +M +
Sbjct: 9   FPSASHGFCLRYVSENFR-------DTFKNTKLVNIFWN-AVYALTAAEFESKITEMIE 161


>TC85812 similar to GP|18650650|gb|AAL75894.1 At1g76680/F28O16_5
           {Arabidopsis thaliana}, partial (60%)
          Length = 878

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
 Frame = +3

Query: 83  IMELFWSHPNAIKLFNTFPHVVIMDCTYK-----TNKFQIPLLEMVGLTSTGLTYSIAFC 137
           ++ELFW H     L  TF ++++   T++     T  F  P L +      G+     F 
Sbjct: 15  LIELFWHHSQDKDLMATFHNLMLSSITHREPPALTEVFS*PKLPVSLTPLKGIQIRQVFG 194

Query: 138 YMTRERTPDYVWALECMKSL 157
             +  R  + +W L  +K L
Sbjct: 195 LKSMSRHGNPLWMLFMLKVL 254


>AL381803 
          Length = 426

 Score = 27.7 bits (60), Expect = 4.2
 Identities = 12/34 (35%), Positives = 17/34 (49%)
 Frame = +3

Query: 16 WVPPRHMLATLKENNPGNLSTITQVYNRIKKVKE 49
          W+P   ML  L   NP  +  + + Y RIK + E
Sbjct: 12 WLPRLRMLLALGS*NPPKVEELVKTYQRIKNLLE 113


>TC86058 similar to GP|15912261|gb|AAL08264.1 AT4g27720/T29A15_210
           {Arabidopsis thaliana}, partial (96%)
          Length = 1979

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 155 KSLLADPARLPGVIVTDRELALLSAVRNIFPGATH 189
           KSLLA        I +D ++ALL A++++F G+ +
Sbjct: 848 KSLLAQFRGAAVAIASDEKIALLGAIQSLFEGSMY 952


>TC81343 homologue to GP|3336924|emb|CAB06807.1 signal peptidase I
           {Streptomyces lividans}, partial (4%)
          Length = 760

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 14/38 (36%), Positives = 21/38 (54%)
 Frame = -3

Query: 104 VIMDCTYKTNKFQIPLLEMVGLTSTGLTYSIAFCYMTR 141
           +++ C+  TN   + LL +  LTS  LT +  FC  TR
Sbjct: 737 IMIICSTYTNSI*VTLLSIPTLTSMKLTITSLFCSHTR 624


>TC76450 similar to GP|17065130|gb|AAL32719.1 putative protein {Arabidopsis
           thaliana}, partial (83%)
          Length = 2171

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 12/42 (28%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
 Frame = -1

Query: 83  IMELFWSHPNAIKLFNTFPHVVIMD-CTYKTNKFQIPLLEMV 123
           I+ L W+  ++ +  N+ PH+  ++  T + N+F +P + MV
Sbjct: 677 IVTLIWTGSSSTEKLNSSPHIGFLEPGTMELNRFSLPHVMMV 552


>BI309506 similar to GP|12597784|gb pinhead-like protein {Arabidopsis
           thaliana}, partial (20%)
          Length = 737

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 16/67 (23%), Positives = 34/67 (49%)
 Frame = +1

Query: 34  LSTITQVYNRIKKVKELDCGPLTEMQYLLKKLAEANYVHFKRHEEDSGVIMELFWSHPNA 93
           L+ +T + +++K+++ +    L  +  +++K     Y   KR  E S  ++     +PN 
Sbjct: 127 LNNVTVLESKLKRIQSIASNNLQLLICIMEK-KHKGYADLKRIAETSVGVVSQCCLYPNL 303

Query: 94  IKLFNTF 100
           IKL + F
Sbjct: 304 IKLSSQF 324


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.321    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,695,392
Number of Sequences: 36976
Number of extensions: 121349
Number of successful extensions: 596
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of query: 242
length of database: 9,014,727
effective HSP length: 93
effective length of query: 149
effective length of database: 5,575,959
effective search space: 830817891
effective search space used: 830817891
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)