TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0282.7
         (463 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87308 similar to GP|8131905|gb|AAF73132.1| homogentisate 1 2-d...   854  0.0
AL374138 similar to GP|8131905|gb|A homogentisate 1 2-dioxygenas...    75  4e-14
AW774877 weakly similar to PIR|F86416|F864 probable RNA-binding ...    31  1.2
TC78210 similar to GP|6056413|gb|AAF02877.1| Unknown protein {Ar...    29  4.4
TC77915 similar to PIR|D96815|D96815 probable gamma-glutamyl hyd...    28  5.7
TC89671 weakly similar to GP|9759560|dbj|BAB11162.1 C3HC4-type R...    28  5.7
BI267030 similar to GP|10281000|dbj pseudo-response regulator 9 ...    28  7.5
TC79146 similar to GP|9757884|dbj|BAB08471.1 RuvB DNA helicase-l...    28  7.5
TC93538 similar to SP|Q12644|NUIM_NEUCR NADH-ubiquinone oxidored...    28  9.8
BG648345 similar to PIR|T04746|T047 hypothetical protein T16H5.1...    28  9.8
BG586257 homologue to GP|8809623|dbj| gene_id:MQL5.26~unknown pr...    28  9.8
BE325760 similar to PIR|B86423|B8 hypothetical protein AAG12856....    28  9.8

>TC87308 similar to GP|8131905|gb|AAF73132.1| homogentisate 1 2-dioxygenase
           {Lycopersicon esculentum}, partial (89%)
          Length = 1715

 Score =  854 bits (2206), Expect = 0.0
 Identities = 395/444 (88%), Positives = 421/444 (93%)
 Frame = +3

Query: 1   MEHSTAGDDFNYLSGFGNHFSSEALAGALPEAQNSPLICPYGLYAEQISGTSFTSPRNLN 60
           M++S +GDDFNY SGFGNHFSSEA+ GALP  QNSPLICP+GLYAEQISGTSFT+PR+LN
Sbjct: 138 MDNSISGDDFNYQSGFGNHFSSEAITGALPVEQNSPLICPFGLYAEQISGTSFTTPRSLN 317

Query: 61  LFSWFYRVKPSVTHEPFKPRVPCNGRILSEFNHSNSSTNPTQLRWKPMDSPDSPTDFIDG 120
           LFSW YR+KPSVTHEPFK RVP N +ILSEFN SNSSTNPTQLRWKP D PDSPTDFIDG
Sbjct: 318 LFSWLYRIKPSVTHEPFKARVPSNKKILSEFNDSNSSTNPTQLRWKPTDIPDSPTDFIDG 497

Query: 121 LSTVCGSGSSFMRHGYAIHMYTANKSMNNCAFCNADGDFLIVPQQGRLFITTECGRLKVS 180
           L TVCGSGSSFMRHGYAIHMYTANKSM+NCAFCNADGDFLIVPQQGRLFITTECGRL VS
Sbjct: 498 LFTVCGSGSSFMRHGYAIHMYTANKSMDNCAFCNADGDFLIVPQQGRLFITTECGRLNVS 677

Query: 181 PGEIAMLPQGFRFTVDLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWF 240
           PG++A++PQGFRF V+LPDGPSRGYVAE+FGTHFQLPDLGPIGANGLA+PRDFL PTAWF
Sbjct: 678 PGDVAIIPQGFRFNVNLPDGPSRGYVAEVFGTHFQLPDLGPIGANGLASPRDFLAPTAWF 857

Query: 241 EDKSYPGYTIVQKFGGELFSAVQDFSPFNVVAWRGNYVPYKYDLSKFCPYNTVLFDHSDP 300
           EDKSYPGYTIVQKFGGELF+A+QDFSPFNVVAW GNYVPYKYDLSKFCPYNTVL+DHSDP
Sbjct: 858 EDKSYPGYTIVQKFGGELFTAIQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLYDHSDP 1037

Query: 301 SINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEAKVD 360
           SINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHG YEAKVD
Sbjct: 1038SINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGNYEAKVD 1217

Query: 361 GFLPGGASLHSCMTPHGPDTKSYEATIARGNDVGPNKITDTMAFMFESCLIPRISRWALE 420
           GFLPGGASLH+CMTPHGPDTKSYE+TIARGN+VGP+KI DTMAFMFES LIPRIS+ ALE
Sbjct: 1218GFLPGGASLHNCMTPHGPDTKSYESTIARGNNVGPHKIIDTMAFMFESSLIPRISQSALE 1397

Query: 421 SPFLDHDYYQCWIGLRSHFNVTEI 444
           SPFLDHDYYQCWIGLRSHF V E+
Sbjct: 1398SPFLDHDYYQCWIGLRSHFTVPEL 1469


>AL374138 similar to GP|8131905|gb|A homogentisate 1 2-dioxygenase
           {Lycopersicon esculentum}, partial (7%)
          Length = 569

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 32/35 (91%), Positives = 35/35 (99%)
 Frame = +3

Query: 361 GFLPGGASLHSCMTPHGPDTKSYEATIARGNDVGP 395
           GFLPGGASLH+CMTPHGPDTKSYE+TIARGN+VGP
Sbjct: 3   GFLPGGASLHNCMTPHGPDTKSYESTIARGNNVGP 107


>AW774877 weakly similar to PIR|F86416|F864 probable RNA-binding protein MEI2
            36123-32976 [imported] - Arabidopsis thaliana, partial
           (4%)
          Length = 407

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 32/113 (28%), Positives = 46/113 (40%)
 Frame = +1

Query: 18  NHFSSEALAGALPEAQNSPLICPYGLYAEQISGTSFTSPRNLNLFSWFYRVKPSVTHEPF 77
           NH S  A A   P    SP I P G    ++S   FT+  N          + S++    
Sbjct: 70  NHLSGLA-AILSPHTSTSPKIAPIGKDPGRVSNQMFTNSANSGSTQGV-AFQHSISFP-- 237

Query: 78  KPRVPCNGRILSEFNHSNSSTNPTQLRWKPMDSPDSPTDFIDGLSTVCGSGSS 130
           +  V  + R +S F  SNSS++       P     SPT + +  +T   S SS
Sbjct: 238 EKNVNVSPRPISAFGESNSSSSSVGTLSGPQFLWGSPTPYSENSNTSAWSSSS 396


>TC78210 similar to GP|6056413|gb|AAF02877.1| Unknown protein {Arabidopsis
           thaliana}, partial (23%)
          Length = 1254

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 141 YTANKSMNNCAFCNADGDFLIVPQQGRLFITTECGR-LKVSPGEIAMLPQGFRFTVDLPD 199
           + A + M N    N DG  L   ++ R+ +     R   +    I  LP+  R  VDLPD
Sbjct: 312 HEAMRKMKNEFMVNWDG--LRTKEKERILVLAATNRPFDLDEAVIRRLPR--RLMVDLPD 479

Query: 200 GPSRGYVAEI 209
            P+RG +  +
Sbjct: 480 APNRGKILRV 509


>TC77915 similar to PIR|D96815|D96815 probable gamma-glutamyl hydrolase
           [imported] - Arabidopsis thaliana, partial (84%)
          Length = 1361

 Score = 28.5 bits (62), Expect = 5.7
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -1

Query: 44  YAEQISGTSFTSPRNLNLFSWFYRVKPSVTHEPFKPRVPCNGRILSEFNHSNSSTNPTQL 103
           Y  + S  SF S   LN+     + KPS+ H P K     N   L   +H +   + T L
Sbjct: 455 YTGK*SPASFFSKAILNILLTVSKYKPSLAHPPVKRTPFTNSSFLRRISHGSVYISGTTL 276


>TC89671 weakly similar to GP|9759560|dbj|BAB11162.1 C3HC4-type RING zinc
           finger protein-like {Arabidopsis thaliana}, partial
           (46%)
          Length = 1421

 Score = 28.5 bits (62), Expect = 5.7
 Identities = 16/43 (37%), Positives = 22/43 (50%)
 Frame = +3

Query: 65  FYRVKPSVTHEPFKPRVPCNGRILSEFNHSNSSTNPTQLRWKP 107
           F R   +VT  P  P + C    L +  HSNSS++P  + W P
Sbjct: 474 FLRCPSNVTELPLAP-ISC----LRDKEHSNSSSSPVIVSWAP 587


>BI267030 similar to GP|10281000|dbj pseudo-response regulator 9 {Arabidopsis
           thaliana}, partial (11%)
          Length = 227

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 92  NHSNSSTNPTQLRWKPMDSPDSPTDFIDGLSTVCGSGSSFMRHGYAIHMYTANKSMN 148
           +H+N    PT LR   ++  DS    I  L   CG   + +R G        NKS++
Sbjct: 43  DHNNKFVPPTMLRVLLVEPDDSTRHIISALLRNCGYKVAAVRDGLKAWETLKNKSLD 213


>TC79146 similar to GP|9757884|dbj|BAB08471.1 RuvB DNA helicase-like protein
           {Arabidopsis thaliana}, partial (47%)
          Length = 792

 Score = 28.1 bits (61), Expect = 7.5
 Identities = 13/32 (40%), Positives = 18/32 (55%)
 Frame = -3

Query: 207 AEIFGTHFQLPDLGPIGANGLAAPRDFLVPTA 238
           A +F    +   L  I ANG++ PRDF +P A
Sbjct: 460 ASVFDISREKSSLPAIMANGVSRPRDFAIPIA 365


>TC93538 similar to SP|Q12644|NUIM_NEUCR NADH-ubiquinone oxidoreductase 23
           kDa subunit  mitochondrial precursor (EC 1.6.5.3) (EC
           1.6.99.3), partial (68%)
          Length = 634

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 15/41 (36%), Positives = 19/41 (45%), Gaps = 8/41 (19%)
 Frame = +3

Query: 306 LTAPTDKPGVALLDFV--------IFPPRWLVAEHTFRPPY 338
           +TA    P   +LD+         IF   W+V E  FRPPY
Sbjct: 15  VTAKPKAPKPTVLDYTANLFLLTEIFRGMWIVLEQFFRPPY 137


>BG648345 similar to PIR|T04746|T047 hypothetical protein T16H5.10 -
           Arabidopsis thaliana, partial (4%)
          Length = 788

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = -2

Query: 289 PYNTVLFDHSDPSINTVLTAPTDKPGVALLDF 320
           P+ T+ F+ S    N+ LT+PT  PG+    F
Sbjct: 163 PFATIFFNISTTLTNSTLTSPTKIPGLTATAF 68


>BG586257 homologue to GP|8809623|dbj| gene_id:MQL5.26~unknown protein
           {Arabidopsis thaliana}, partial (12%)
          Length = 700

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 18/70 (25%), Positives = 34/70 (47%)
 Frame = +2

Query: 351 IHGGYEAKVDGFLPGGASLHSCMTPHGPDTKSYEATIARGNDVGPNKITDTMAFMFESCL 410
           I   +++   GFL      H C+  +   T+S +   A+G      K+++ ++   E+C+
Sbjct: 485 IKSSFKSSPSGFL------HLCIYQN*TPTQSCKQNPAKG------KVSNMISLNLEACI 628

Query: 411 IPRISRWALE 420
           I  I +W LE
Sbjct: 629 I*FIMQWGLE 658


>BE325760 similar to PIR|B86423|B8 hypothetical protein AAG12856.1 [imported]
           - Arabidopsis thaliana, partial (11%)
          Length = 669

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 124 VCGSGSSFMRHGYAIHMYTANKSMNN 149
           +C   S ++RHGY +H +T   SM +
Sbjct: 404 LCCQISKYIRHGYCLHAFTGLASMTS 327


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.321    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,837,177
Number of Sequences: 36976
Number of extensions: 272711
Number of successful extensions: 1175
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of query: 463
length of database: 9,014,727
effective HSP length: 99
effective length of query: 364
effective length of database: 5,354,103
effective search space: 1948893492
effective search space used: 1948893492
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)