TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0249.1
         (68 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87472 similar to GP|10177334|dbj|BAB10683. lysosomal Pro-X car...    80  2e-16
BQ141657                                                               25  4.4
TC81310 weakly similar to GP|22136934|gb|AAM91811.1 unknown prot...    25  5.8
BG452369 PIR|T04588|T04 hypothetical protein F23E13.80 - Arabido...    25  7.5
TC92855                                                                25  7.5
TC79464 similar to GP|10177175|dbj|BAB10444. contains similarity...    25  7.5
TC89860 similar to PIR|T05209|T05209 hypothetical protein F24J7....    25  7.5
TC81580 weakly similar to GP|7341113|gb|AAF61210.1| unknown {Gly...    24  9.9

>TC87472 similar to GP|10177334|dbj|BAB10683. lysosomal Pro-X carboxypeptidase
            {Arabidopsis thaliana}, partial (75%)
          Length = 1802

 Score = 80.1 bits (196), Expect = 2e-16
 Identities = 38/68 (55%), Positives = 50/68 (72%)
 Frame = +3

Query: 1    DIEKDLKRSASNIIFYNGLRDPWSGGGVLKNISKTLVAIVAKEGAHHRDLRYSTKEDPKW 60
            +I   L++  SNIIF NGL DPWSGG VL+NIS+++V++V +EGA H DLR ST+ DP W
Sbjct: 1359 NIHLALRKFGSNIIFSNGLLDPWSGGSVLQNISESIVSLVTEEGAPHIDLRASTENDPDW 1538

Query: 61   LKDVRIKE 68
            L + R  E
Sbjct: 1539 LVEQRATE 1562


>BQ141657 
          Length = 970

 Score = 25.4 bits (54), Expect = 4.4
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = +3

Query: 6   LKRSASNIIFYNGLRDPWSGGGVLKNISKTLVAIVAKEGAHHR-----DLRYSTKEDPKW 60
           + RS  N  +Y    + W G   +KN  +T      + GA H      + RY+      W
Sbjct: 582 ISRSPRNARYYKSNTEAWGGAKTIKNERQT------RSGARHELHLLSNYRYNIH---VW 734

Query: 61  LKDVRIK 67
           L  +R++
Sbjct: 735 LCTIRVR 755


>TC81310 weakly similar to GP|22136934|gb|AAM91811.1 unknown protein
           {Arabidopsis thaliana}, partial (45%)
          Length = 984

 Score = 25.0 bits (53), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (69%)
 Frame = +1

Query: 7   KRSASNIIFYNGLRDPW 23
           K + S I+F NG +DPW
Sbjct: 451 KIAGSKIVFTNGSQDPW 501


>BG452369 PIR|T04588|T04 hypothetical protein F23E13.80 - Arabidopsis
           thaliana, partial (2%)
          Length = 585

 Score = 24.6 bits (52), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 9   SASNIIFYNGLRDPW 23
           + S IIF NG +DPW
Sbjct: 263 TGSKIIFTNGSQDPW 307


>TC92855 
          Length = 625

 Score = 24.6 bits (52), Expect = 7.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 13  IIFYNGLRDPWSGGGVLKNI 32
           I+ + GLRD W  GG+++ +
Sbjct: 357 ILIHQGLRDGWCCGGLMRKM 298


>TC79464 similar to GP|10177175|dbj|BAB10444. contains similarity to ATP/GTP
            nucleotide-binding protein~gene_id:MCI2.1 {Arabidopsis
            thaliana}, partial (69%)
          Length = 1739

 Score = 24.6 bits (52), Expect = 7.5
 Identities = 12/35 (34%), Positives = 21/35 (59%)
 Frame = -1

Query: 20   RDPWSGGGVLKNISKTLVAIVAKEGAHHRDLRYST 54
            +DP+S  GVL N+S+  +   A +   H  ++YS+
Sbjct: 1301 QDPYSDLGVLGNMSRVEILFCASQ---HTKMKYSS 1206


>TC89860 similar to PIR|T05209|T05209 hypothetical protein F24J7.50 -
           Arabidopsis thaliana, partial (16%)
          Length = 1139

 Score = 24.6 bits (52), Expect = 7.5
 Identities = 10/17 (58%), Positives = 13/17 (75%)
 Frame = +2

Query: 3   EKDLKRSASNIIFYNGL 19
           EKD K+SAS  +FY G+
Sbjct: 476 EKDQKKSASQPLFYKGV 526


>TC81580 weakly similar to GP|7341113|gb|AAF61210.1| unknown {Glycine max},
           partial (84%)
          Length = 827

 Score = 24.3 bits (51), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 27  GVLKNISKTLVAIVAKEGAHH 47
           G+ K ISK + ++   EGA H
Sbjct: 181 GIKKKISKVVASVFTSEGAKH 119


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.315    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,082,069
Number of Sequences: 36976
Number of extensions: 18168
Number of successful extensions: 72
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of query: 68
length of database: 9,014,727
effective HSP length: 44
effective length of query: 24
effective length of database: 7,387,783
effective search space: 177306792
effective search space used: 177306792
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)