BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0230.6
(1145 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP... 218 1e-56
AI974280 weakly similar to GP|20279447|g putative TNP2-like tran... 183 4e-46
BG452205 weakly similar to GP|1345502|emb TNP2 {Antirrhinum maju... 172 5e-43
BF650639 weakly similar to GP|22748425|g putative transposon pro... 160 3e-39
AW257182 weakly similar to GP|20279447|g putative TNP2-like tran... 134 3e-31
BF631908 weakly similar to GP|21450441|gb| putative transposon p... 100 4e-21
BG586318 similar to GP|6069576|dbj| transposon-like ORF {Brassic... 74 3e-13
TC89338 51 3e-06
BF636730 49 8e-06
TC82803 similar to PIR|D85049|D85049 probable transposon protein... 48 2e-05
TC91682 41 0.003
BQ149799 39 0.011
AJ548089 37 0.043
TC85495 similar to GP|21593125|gb|AAM65074.1 Bax inhibitor-1 lik... 31 2.4
TC81194 weakly similar to GP|14647157|gb|AAK71870.1 chromomethyl... 30 5.3
CA921077 30 5.3
TC76354 similar to GP|4589396|dbj|BAA76744.1 asparaginyl endopep... 25 7.1
>TC87958 weakly similar to GP|20279447|gb|AAM18727.1 putative TNP2-like
transposon protein {Oryza sativa (japonica
cultivar-group)}, partial (10%)
Length = 2433
Score = 218 bits (555), Expect = 1e-56
Identities = 130/327 (39%), Positives = 184/327 (55%), Gaps = 8/327 (2%)
Frame = +1
Query: 544 LPYWKYNELRHNLDVMHIEKNVCDNIIGTLLNQEGKSKDNYKARADLVDMGIRSILHPQP 603
LPYW N L HNLDVMHIEKN+ DNIIGTLL+ GK+KD+ + R DL +MGIR LHP+
Sbjct: 4 LPYWASNTLHHNLDVMHIEKNIFDNIIGTLLDIPGKTKDHVRGRYDLEEMGIRKNLHPR- 180
Query: 604 SPNTNTMLLPRACYQMTTKEKDDFLSVLKNVKAPDECSSNISRCVQVQQRKIFGLKSYDC 663
+ + +C+ MT++EK F VLK K PD +SNISRCV+V ++KI G KS+D
Sbjct: 181 DVGGGRVAIANSCFSMTSEEKSMFCGVLKGAKLPDGSASNISRCVKVSEKKICGYKSHDA 360
Query: 664 HVLMQELLPIALRGSLPDKVTSVLIDLCNFFKQICSKVLNVKFIEQLESQIAITLCQLET 723
H ++ LL I +R ++P V LI L FF+ +C K + Q+ C T
Sbjct: 361 HFMLHYLLQIPIRSTMPKAVAQPLIRLSRFFRSLCQK----GYPNP*SGQLTGRNC-*ST 525
Query: 724 IFPPSFFTIMVHLVVHLA----HEAKVGGPVQ--YRWMYPIERY*LCIFKLIYFNVRIIY 777
+F +F ++V L++ ++ Q +RWMYP+ERY
Sbjct: 526 LFN*RWFFLLVFLMLWFT*LFIFRMRLDWVAQFNFRWMYPVERY---------------- 657
Query: 778 I*NYFFPRFLLTLKSFVRNKAYPEGSIAESFLANECLTFCSQYL-SGVETRFSRPTRNDD 836
L LK +VRN++ PEGSIAE ++A E +T CS+Y+ GV+TR +R +N D
Sbjct: 658 ---------LCKLKGYVRNRSRPEGSIAEGYVAEEGITICSRYMHKGVDTRSNRKNQNYD 810
Query: 837 EFD-STLDDGSFLHPMGRPLGRKRQQK 862
+ D +D+ + +GRPLG K+ K
Sbjct: 811 DSDLLEVDEIDYFSSIGRPLGGKKNGK 891
>AI974280 weakly similar to GP|20279447|g putative TNP2-like transposon
protein {Oryza sativa (japonica cultivar-group)},
partial (8%)
Length = 457
Score = 183 bits (464), Expect = 4e-46
Identities = 82/138 (59%), Positives = 101/138 (72%)
Frame = +1
Query: 383 MLSLLIPGPKGPGNNIDTYLQPLVKELQELWENGLETFDAYKKESFQLHAALMWTINDFP 442
MLSLLIPGP P NID YL+PL+ EL+ELWE G E +DA K+ F+ HAAL+WTI+D P
Sbjct: 13 MLSLLIPGPSSPKRNIDVYLEPLIDELKELWERGFEVYDASSKQLFEAHAALLWTISDLP 192
Query: 443 AYANLSGWSTKGKYACPCCGFETSSQWLRNGRKFCYMSHRRWLTPNHKWRLNGKDFDGTQ 502
AY LSGWST GK ACP C ++T S +L++ RK CYMSHRR+L P H+WR + K FDG +
Sbjct: 193 AYTMLSGWSTSGKLACPVCSYDTCSMYLKHSRKTCYMSHRRFLDPKHRWRKDKKGFDGKK 372
Query: 503 EFRDPPIRLDGTAQLRQL 520
E R P L G+A LR+L
Sbjct: 373 EIRVAPFPLSGSAILRKL 426
>BG452205 weakly similar to GP|1345502|emb TNP2 {Antirrhinum majus}, partial
(16%)
Length = 619
Score = 172 bits (437), Expect = 5e-43
Identities = 88/179 (49%), Positives = 110/179 (61%), Gaps = 1/179 (0%)
Frame = +1
Query: 193 LPKSFYETKKMISELGLGYEKIHACPNDCILYWDKYTNDEVCPKCGASRW-KTVTEEVQP 251
+P S+ +T+ MI +LGL Y KI ACPNDC+LYW + ND C CGASRW ++ TE Q
Sbjct: 121 VPDSYNKTR*MIRDLGLDYSKIDACPNDCMLYWKDHKNDISCHVCGASRWIESTTESGQI 300
Query: 252 NGTKTSEKQKNTPLPKSVPLPGIPAKILRWFPLKPRLQRLFMSSKIAEAMRWHRDGRLDD 311
K K + KILR FPL PRLQRLFM S+ A ++RWH D D
Sbjct: 301 EENKKEHK--------------VSTKILRHFPLIPRLQRLFMCSETATSLRWHHDDCSKD 438
Query: 312 GFLRHPADSLAWKKFDSKYQTFALDPHNVRLGLASDGFNPFKTMSITHST*PVILVHFN 370
G LRHPAD AWK F+ + FA D N+RLGLASDGFNPF+ M++ + PV L+ +N
Sbjct: 439 GKLRHPADGQAWKDFNGHHPEFARDSRNIRLGLASDGFNPFRAMNLKYXAWPVXLIPYN 615
>BF650639 weakly similar to GP|22748425|g putative transposon protein {Oryza
sativa (japonica cultivar-group)}, partial (6%)
Length = 568
Score = 160 bits (405), Expect = 3e-39
Identities = 81/170 (47%), Positives = 100/170 (58%), Gaps = 1/170 (0%)
Frame = +2
Query: 213 KIHACPNDCILYWDKYTNDEVCPKCGASRW-KTVTEEVQPNGTKTSEKQKNTPLPKSVPL 271
KI AC NDC+LYW + ND C CGASR ++ TE Q K K
Sbjct: 71 KIDACXNDCMLYWKDHKNDISCHVCGASRXIESTTEXGQIEENKKEHK------------ 214
Query: 272 PGIPAKILRWFPLKPRLQRLFMSSKIAEAMRWHRDGRLDDGFLRHPADSLAWKKFDSKYQ 331
+ KILR FPL P LQR FM S+ A ++RWH D DG LRHPAD AWK F+ +
Sbjct: 215 --VSTKILRHFPLIPXLQRXFMCSETATSLRWHHDDXSKDGKLRHPADGQAWKDFNGHHP 388
Query: 332 TFALDPHNVRLGLASDGFNPFKTMSITHST*PVILVHFNLPPWMCMKQSF 381
FA D N+ LGLASDGFNPF+ M++ +S P IL+ +N PPW+CMK +
Sbjct: 389 EFARDSRNIXLGLASDGFNPFRAMNLKYSAWPXILIPYNFPPWLCMKAXY 538
>AW257182 weakly similar to GP|20279447|g putative TNP2-like transposon
protein {Oryza sativa (japonica cultivar-group)},
partial (6%)
Length = 387
Score = 134 bits (336), Expect = 3e-31
Identities = 57/95 (60%), Positives = 74/95 (77%)
Frame = +1
Query: 406 VKELQELWENGLETFDAYKKESFQLHAALMWTINDFPAYANLSGWSTKGKYACPCCGFET 465
++EL+ LWE+G+ET+DA K + F++ AAL+WTI+DFPAYA LSGWSTKGK ACPCC T
Sbjct: 7 IEELKVLWESGVETYDASKNQMFRMRAALLWTISDFPAYAMLSGWSTKGKLACPCCNNNT 186
Query: 466 SSQWLRNGRKFCYMSHRRWLTPNHKWRLNGKDFDG 500
SS +L++ RK CYM HR +L +H WR N K F+G
Sbjct: 187 SSTYLKHSRKMCYMDHRTFLPMDHAWRENRKSFNG 291
>BF631908 weakly similar to GP|21450441|gb| putative transposon protein
5'-partial {Oryza sativa (japonica cultivar-group)},
partial (17%)
Length = 681
Score = 100 bits (248), Expect = 4e-21
Identities = 50/97 (51%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Frame = +3
Query: 741 AHEAKVGGPVQYRWMYPIERY*LCIFKLIYFNVRIIYI*NYFFPRFLLTLKSFVRNKAYP 800
AHEA++ GPV YRWMYPIER F+LTLK++VRN+ YP
Sbjct: 429 AHEARIAGPVHYRWMYPIER-------------------------FILTLKNYVRNRNYP 533
Query: 801 EGSIAESFLANECLTFCSQYLS-GVETRFSRPTRNDD 836
EGSIAE ++ANECLT CS+Y+S GV+T+F++P RN D
Sbjct: 534 EGSIAEGYVANECLTHCSRYMSDGVQTKFNKPPRNLD 644
>BG586318 similar to GP|6069576|dbj| transposon-like ORF {Brassica rapa},
partial (11%)
Length = 267
Score = 73.9 bits (180), Expect = 3e-13
Identities = 39/87 (44%), Positives = 52/87 (58%)
Frame = +3
Query: 547 WKYNELRHNLDVMHIEKNVCDNIIGTLLNQEGKSKDNYKARADLVDMGIRSILHPQPSPN 606
W+ + LRHNLDVMHIEKN DN++ T+LN +GK+KDN K+R DLVD+ RS LH +
Sbjct: 3 WEDHLLRHNLDVMHIEKNFFDNLMNTILNVQGKTKDNLKSRLDLVDICARSELHVDENGR 182
Query: 607 TNTMLLPRACYQMTTKEKDDFLSVLKN 633
P Y++ KD + N
Sbjct: 183 A-----PFPIYRLDAGGKDALFDWISN 248
>TC89338
Length = 1088
Score = 50.8 bits (120), Expect = 3e-06
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +3
Query: 17 EYIRGVNEFLEFAFQNSQVSEKIW-CPCTTCANCK-SLSRTSVYEHLTNPRRGFLRGYKQ 74
EY G+ EFL+FA +N +E ++ CPC +C N LS+ + HL + G + Y +
Sbjct: 498 EYDNGMTEFLQFAEKNLPNTEGLFPCPCISCGNWDPKLSKEEIRGHLVSV--GICQNYTE 671
Query: 75 WIFHGEKPVASSS 87
WI+HGE + S S
Sbjct: 672 WIWHGETMMTSVS 710
Score = 50.4 bits (119), Expect = 4e-06
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +3
Query: 4 SREWIRDPSRRSEEYIRGVNEFLEFAFQNSQVSEKIW-CPCTTCAN-CKSLSRTSVYEHL 61
++ W++ R S EY GV EFL+FA +N +E ++ CPC +C N LS+ + HL
Sbjct: 219 AKRWMK-AYRLSAEYDNGVTEFLQFAEKNLPNTEGLFPCPCVSCGNRDPKLSKEEIKGHL 395
Query: 62 TNPRRGFLRGYKQWIFHGEKPVASSS 87
+ G + Y Q I+HGE + S S
Sbjct: 396 VSV--GICQNYTQ*IWHGETMMTSVS 467
>BF636730
Length = 637
Score = 49.3 bits (116), Expect = 8e-06
Identities = 31/86 (36%), Positives = 43/86 (49%), Gaps = 7/86 (8%)
Frame = +1
Query: 3 ESREWIR-----DPSRRSEEYIRGVNEFLEFAFQNSQVSE--KIWCPCTTCANCKSLSRT 55
E R+W+ D SR ++E++ GV EF+EFA + K+ CPC C K S
Sbjct: 295 EHRKWMDNRMRPDNSRVTDEFLAGVCEFVEFACAQDDFKKVGKLRCPCKICKCRKP*SVD 474
Query: 56 SVYEHLTNPRRGFLRGYKQWIFHGEK 81
V +HL +GF Y W HGE+
Sbjct: 475 DVMKHLC--MKGFKEDYYYWSSHGEQ 546
>TC82803 similar to PIR|D85049|D85049 probable transposon protein [imported]
- Arabidopsis thaliana, partial (5%)
Length = 755
Score = 48.1 bits (113), Expect = 2e-05
Identities = 22/40 (55%), Positives = 26/40 (65%)
Frame = +3
Query: 721 LETIFPPSFFTIMVHLVVHLAHEAKVGGPVQYRWMYPIER 760
+ T F M HL +HLA+EA+VG PVQYR MYP ER
Sbjct: 261 IRTNISSKLFDSMEHLSIHLAYEARVGNPVQYR*MYPFER 380
Score = 38.9 bits (89), Expect = 0.011
Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Frame = +1
Query: 710 LESQIAITLCQLETIFPPSFFTIM-VHLVVHLAHEAKVGGPVQYRWMYPIERY*LCI--- 765
L IAI +C LE IFPPSF T + L + L + + Y I+ CI
Sbjct: 229 LLENIAIIMC*LEQIFPPSFLTQWNIFLFI*LMKQ-------ELAIPYNIDE---CIHSK 378
Query: 766 ---FKLIY--------------FNVRIIYI*NYFFPRFLLTLKSFVRNKAYPEGSIAESF 808
F LIY N+ ++Y RF+ T K V N+AY EGSI + +
Sbjct: 379 G*LFNLIYSPV*FS*LFLHFSKLNLDLVY-------RFIRTSKQNVTNQAYVEGSIWKDY 537
Query: 809 LANECLTFCSQY 820
+ T S Y
Sbjct: 538 ILEVVSTLASYY 573
>TC91682
Length = 1093
Score = 40.8 bits (94), Expect = 0.003
Identities = 17/36 (47%), Positives = 27/36 (74%)
Frame = +2
Query: 137 RLVKDNEQILYPNCKKYSKLSFMVHLYHLKCLHGWS 172
RLV+D++ LY C K+++LS ++ LY+LK +GWS
Sbjct: 2 RLVRDSKIPLYDGCAKFTRLSTVLKLYNLKARNGWS 109
>BQ149799
Length = 437
Score = 38.9 bits (89), Expect = 0.011
Identities = 20/45 (44%), Positives = 28/45 (61%), Gaps = 1/45 (2%)
Frame = +1
Query: 5 REWIRDPSRRSEEYIRGVNEFLEFAFQNSQVSEKIW-CPCTTCAN 48
R W++ R S EY GV EFL+FA +N +E ++ CPC +C N
Sbjct: 265 RRWMK-AYRLSVEYDNGVTEFLQFAEKNLPNTEGLFPCPCVSCGN 396
>AJ548089
Length = 560
Score = 37.0 bits (84), Expect = 0.043
Identities = 21/64 (32%), Positives = 36/64 (55%), Gaps = 2/64 (3%)
Frame = +1
Query: 26 LEFAFQNSQVSEKIW-CPCTTCANCK-SLSRTSVYEHLTNPRRGFLRGYKQWIFHGEKPV 83
++FA +N +E ++ CPC +C N LS+ + HL + G + Y +WI++GE +
Sbjct: 193 IKFAEKNLPNTEGLFPCPCISCGNWDPKLSKEEIRGHLVSV--GICQNYTEWIWYGETMM 366
Query: 84 ASSS 87
S S
Sbjct: 367 TSVS 378
>TC85495 similar to GP|21593125|gb|AAM65074.1 Bax inhibitor-1 like
{Arabidopsis thaliana}, partial (95%)
Length = 1552
Score = 31.2 bits (69), Expect = 2.4
Identities = 18/68 (26%), Positives = 32/68 (46%)
Frame = -3
Query: 222 ILYWDKYTNDEVCPKCGASRWKTVTEEVQPNGTKTSEKQKNTPLPKSVPLPGIPAKILRW 281
I+ + +++ P C + W +++QPN SE + +SVP PA +L+
Sbjct: 785 IILFSSFSSSPPQPSCYSK*WLESGQKLQPNQ*TRSEHASHNRDRQSVPSQLFPACLLQC 606
Query: 282 FPLKPRLQ 289
P P+ Q
Sbjct: 605 NPQTPKAQ 582
>TC81194 weakly similar to GP|14647157|gb|AAK71870.1 chromomethylase 3
{Arabidopsis thaliana}, partial (11%)
Length = 926
Score = 30.0 bits (66), Expect = 5.3
Identities = 26/101 (25%), Positives = 44/101 (42%), Gaps = 5/101 (4%)
Frame = +1
Query: 55 TSVYEHLTNPRRGFLRGYKQWIFHGEKPVASSSTIEEPEHTEMEHDMDGLIHDVLASHTA 114
TSV LT+ + G K + G+ VASS +EP+ ++DG ++V +S
Sbjct: 316 TSVSADLTSGKAQKKSGKKTDLDKGKSVVASSGVKKEPKTESDPMNVDGGDNEVSSSKFL 495
Query: 115 EDPLFDDG-----ERNPQVEENANKFYRLVKDNEQILYPNC 150
DP+ + + Q +E R D E+++ C
Sbjct: 496 GDPIPIEAAKLRWPKRYQEKEKKKSRSRSNSDEEEVILARC 618
>CA921077
Length = 438
Score = 30.0 bits (66), Expect = 5.3
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 27 EFAFQNSQVSEK-IWCPCTTCANCKSLSRTSVYEH 60
+ AF V E+ I CPC C N +R VY+H
Sbjct: 437 DIAFTKGMVEEEEILCPCAVCCNDSWETRDVVYDH 333
>TC76354 similar to GP|4589396|dbj|BAA76744.1 asparaginyl endopeptidase
(VmPE-1) {Vigna mungo}, partial (91%)
Length = 1660
Score = 24.6 bits (52), Expect(2) = 7.1
Identities = 11/30 (36%), Positives = 16/30 (52%), Gaps = 1/30 (3%)
Frame = -2
Query: 25 FLEFAFQN-SQVSEKIWCPCTTCANCKSLS 53
++EF F+ S + WC + C C SLS
Sbjct: 915 YIEFPFEVLSLTNSYCWCKVSVCKLCMSLS 826
Score = 23.1 bits (48), Expect(2) = 7.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 4 SREWIRDPSRRSEEYIRGVNEFL 26
S++W+R SR + G NEFL
Sbjct: 1086 SQKWMRSASRWLTVFEGGTNEFL 1018
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.336 0.147 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,200,567
Number of Sequences: 36976
Number of extensions: 741739
Number of successful extensions: 6462
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 3541
Number of HSP's successfully gapped in prelim test: 363
Number of HSP's that attempted gapping in prelim test: 2775
Number of HSP's gapped (non-prelim): 4176
length of query: 1145
length of database: 9,014,727
effective HSP length: 107
effective length of query: 1038
effective length of database: 5,058,295
effective search space: 5250510210
effective search space used: 5250510210
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0230.6