TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0162a.12
         (34 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC78239 similar to SP|P34893|CH10_ARATH 10 kDa chaperonin (Prote...    62  4e-11
TC80201 similar to SP|Q96539|CH10_BRANA 10 kDa chaperonin (Prote...    48  7e-07
TC86755 similar to GP|7331143|gb|AAF60293.1| chaperonin 21 precu...    35  0.005
TC84867 similar to GP|21554204|gb|AAM63283.1 putative 10kd chape...    35  0.009
TC86549 similar to GP|7331143|gb|AAF60293.1| chaperonin 21 precu...    32  0.055

>TC78239 similar to SP|P34893|CH10_ARATH 10 kDa chaperonin (Protein CPN10)
           (Protein groES). [Mouse-ear cress] {Arabidopsis
           thaliana}, partial (96%)
          Length = 546

 Score = 62.4 bits (150), Expect = 4e-11
 Identities = 30/33 (90%), Positives = 30/33 (90%)
 Frame = +2

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           GD VLLP YGGSQIKLDDKEF LFRDEDILGIL
Sbjct: 206 GDHVLLPEYGGSQIKLDDKEFHLFRDEDILGIL 304


>TC80201 similar to SP|Q96539|CH10_BRANA 10 kDa chaperonin (Protein CPN10)
           (Protein GROES). [Rape] {Brassica napus}, partial (97%)
          Length = 755

 Score = 48.1 bits (113), Expect = 7e-07
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = +1

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           GD VLLP YGG ++KLD KE+ L+ D+DILG L
Sbjct: 223 GDTVLLPEYGGVEVKLDHKEYYLYGDDDILGTL 321


>TC86755 similar to GP|7331143|gb|AAF60293.1| chaperonin 21 precursor
           {Lycopersicon esculentum}, partial (90%)
          Length = 985

 Score = 35.4 bits (80), Expect = 0.005
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           G QV+   Y G++++ D  + L+ +DEDI+GIL
Sbjct: 408 GAQVVYSKYAGTEVEFDGSKHLILKDEDIVGIL 506


>TC84867 similar to GP|21554204|gb|AAM63283.1 putative 10kd chaperonin
           {Arabidopsis thaliana}, partial (80%)
          Length = 587

 Score = 34.7 bits (78), Expect = 0.009
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +1

Query: 1   GDQVLLPAYGGSQIKLDDKEF 21
           GD V+L  YGGSQIKLDD+ F
Sbjct: 292 GDHVVLAEYGGSQIKLDDRVF 354


>TC86549 similar to GP|7331143|gb|AAF60293.1| chaperonin 21 precursor
           {Lycopersicon esculentum}, partial (92%)
          Length = 1134

 Score = 32.0 bits (71), Expect = 0.055
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           G QV+   Y G+++  + ++ L+ +D+DI+GIL
Sbjct: 436 GAQVVYSKYAGTEVDFNGEKHLILKDDDIVGIL 534


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.154    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 791,981
Number of Sequences: 36976
Number of extensions: 4214
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 34
length of database: 9,014,727
effective HSP length: 10
effective length of query: 24
effective length of database: 8,644,967
effective search space: 207479208
effective search space used: 207479208
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)