TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0022.14
         (334 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC78845 similar to GP|17473709|gb|AAL38308.1 unknown protein {Ar...    30  1.00
BQ150248 similar to GP|14210668|gb| t7 {Tupaia herpesvirus}, par...    30  1.3
BE999156                                                               30  1.7
TC88860 similar to GP|21593012|gb|AAM64961.1 putative C-4 sterol...    29  2.2
TC81840 weakly similar to GP|15795159|dbj|BAB03147. mouse and hu...    28  3.8
TC78351 homologue to GP|12697498|emb|CAC28225. phosphoenolpyruva...    28  4.9
BQ149943                                                               28  4.9
TC86034 similar to GP|6815067|dbj|BAA90354.1 ESTs AU082210(C5365...    27  8.4
TC82981 weakly similar to GP|5360071|gb|AAD42853.1| serine/threo...    27  8.4
TC76497 homologue to SP|P06411|PSBB_TOBAC Photosystem II P680 ch...    27  8.4

>TC78845 similar to GP|17473709|gb|AAL38308.1 unknown protein {Arabidopsis
           thaliana}, partial (26%)
          Length = 702

 Score = 30.4 bits (67), Expect = 1.00
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
 Frame = -2

Query: 218 HSFRQVSQTVDTVLHNPPRHLESSSPRRVNHREPV---------RHGHLTMGVVRQSTHR 268
           H+FR+ ++++    HNPP++   ++P     ++ +          HG   + V R+S   
Sbjct: 605 HAFRKNNKSISNTKHNPPKNSTKNNPSSTKQKKVIPFEESLKLQNHG---LTVPRESRGD 435

Query: 269 RREGQLQRII 278
           RR   LQ ++
Sbjct: 434 RRRRFLQNLL 405


>BQ150248 similar to GP|14210668|gb| t7 {Tupaia herpesvirus}, partial (2%)
          Length = 984

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = -3

Query: 192 EIKRKNSYDSTPT-LILSRGAQSVSPQHSFRQVSQTVDTV----LHNPPRHLESSSPRRV 246
           + +R  +  +TPT ++LS G  S SP     + ++   +     L   PRH   SSP R 
Sbjct: 814 DCRRVCALRATPTSILLSSGDSSASPSSRCARAARAAPSASRAALRAYPRHAPRSSPARR 635

Query: 247 NHREPVRHGHL 257
            H +  R  ++
Sbjct: 634 RHSQMTRAAYI 602


>BE999156 
          Length = 531

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 15/43 (34%), Positives = 26/43 (59%)
 Frame = +2

Query: 44  KVFASRDEILEWARNLGKQHGFIIVITRSDNGGLKRKTFMILG 86
           ++++ RD++L+   N      FI +ITR D+G  +RK   +LG
Sbjct: 395 EIYSVRDDLLK*V*NEKPLLVFIFIITRLDHGENRRKMTFVLG 523


>TC88860 similar to GP|21593012|gb|AAM64961.1 putative C-4 sterol methyl
           oxidase {Arabidopsis thaliana}, partial (56%)
          Length = 749

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 25/75 (33%), Positives = 30/75 (39%), Gaps = 11/75 (14%)
 Frame = +1

Query: 116 LRARGTKSSTNMFTKQPISLVITLDSPPPMGSTV---HAITSTSFFDFFYYP-------- 164
           LR R   S TN+FT      V+   SP P GST    + IT +S   F +          
Sbjct: 154 LRRRRR*SLTNLFTTPRSPSVVISPSPKPYGSTTPLPNPITFSSVITFSFSSSSSPSFLF 333

Query: 165 LDAFSSKQLMTPDQS 179
           L  FS     TP  S
Sbjct: 334 LSFFSKSNAYTPSMS 378


>TC81840 weakly similar to GP|15795159|dbj|BAB03147. mouse and human tumor
           susceptibility gene-like protein {Arabidopsis thaliana},
           partial (27%)
          Length = 785

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 14/39 (35%), Positives = 18/39 (45%)
 Frame = -2

Query: 216 PQHSFRQVSQTVDTVLHNPPRHLESSSPRRVNHREPVRH 254
           PQHS      ++D+   NPP+H  SS P       P  H
Sbjct: 193 PQHSPHSPISSLDSPSTNPPKHPYSSKPSATVAPNPPSH 77


>TC78351 homologue to GP|12697498|emb|CAC28225. phosphoenolpyruvate
           carboxylase {Sesbania rostrata}, partial (37%)
          Length = 1158

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
 Frame = -2

Query: 203 PTLILSRGAQSVSPQHSFRQVSQTVDTVLH----NP----PRHLESSSPRRVNHREPVRH 254
           P L+       V   H+F +  Q V  +L     +P    P   + + PR  +H +PV H
Sbjct: 335 PNLL*DFQVLQVFEDHAFLRTQQKVHILLELFP*DPHRVNPEEYQGNGPRAKHHTQPVYH 156

Query: 255 GH-LTMGVVRQSTHR 268
            H L    + ++ HR
Sbjct: 155 PHSLLQEPIAEAEHR 111


>BQ149943 
          Length = 683

 Score = 28.1 bits (61), Expect = 4.9
 Identities = 14/61 (22%), Positives = 29/61 (46%)
 Frame = -1

Query: 246 VNHREPVRHGHLTMGVVRQSTHRRREGQLQRIILTSINHTRQLSQYACCMNEMPVDKMHS 305
           VNH   + HGH T+ V   + H     ++ +     +   ++++ Y+   N + +D+ H 
Sbjct: 272 VNHASTLLHGHYTIDVAATTPH--AVSRMHKKKTKKVLKNKKINYYSFKKNNIGMDRGHI 99

Query: 306 G 306
           G
Sbjct: 98  G 96


>TC86034 similar to GP|6815067|dbj|BAA90354.1 ESTs AU082210(C53655)
           AU056546(S20671)  AU056545(S20671) correspond to a
           region of the predicted, partial (42%)
          Length = 2412

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
 Frame = -3

Query: 107 TKKCYCPF----RLRARGTKSSTNMFTKQPISLVITLDSPPPMGSTVHAITSTS 156
           T  C C F    R  + G+ S++   +  P+     L SPPP+ STV   + T+
Sbjct: 517 TSACNCSFVNGSRSFSTGSSSNSRSSSSSPL-----LFSPPPLASTVTVCSDTA 371


>TC82981 weakly similar to GP|5360071|gb|AAD42853.1| serine/threonine kinase
           PKN7 {Myxococcus xanthus}, partial (2%)
          Length = 971

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 20/148 (13%)
 Frame = +2

Query: 185 VTLVTKKEIKRKNSYDSTPTLILSRGA-----QSVSPQHSFRQVSQTVDTVLHNPPRH-- 237
           VTL T KE KR+   +S  T + +  +     + V P H   + + T D + H  P+   
Sbjct: 401 VTLDTMKEPKREPRRESNTTSLTTISS*LISTEGVRPVHGICKTT-TCDLITHGRPKQSL 577

Query: 238 -------LESSSPRR---VNHREPVRHGHLTMGVVR---QSTHRRREGQLQRIILTSINH 284
                  +   SP      + R+    G  + G +    +    R+ G     ++ S+NH
Sbjct: 578 LFCLLGGISCGSPSLRIPTSRRQ*RCSGFSSRGGIHSDAKGASSRKSGTPAAELVGSMNH 757

Query: 285 TRQLSQYACCMNEMPVDKMHSGGMGING 312
              +     C+N        S G+G  G
Sbjct: 758 LSDMVYSGTCLNWCRGLNQSSSGIGYRG 841


>TC76497 homologue to SP|P06411|PSBB_TOBAC Photosystem II P680 chlorophyll A
            apoprotein (CP-47 protein). [Common tobacco] {Nicotiana
            tabacum}, complete
          Length = 4045

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 28/102 (27%), Positives = 46/102 (44%)
 Frame = -3

Query: 134  SLVITLDSPPPMGSTVHAITSTSFFDFFYYPLDAFSSKQLMTPDQSHSFGGVTLVTKKEI 193
            SL +T  S PP  STV    ST +FD     L   +S   +    + + G V+    K++
Sbjct: 1382 SL*LTPLSSPPKNSTVTPTCSTLYFD---SALRKGTSALTIPSPSTKTTGNVS----KKV 1224

Query: 194  KRKNSYDSTPTLILSRGAQSVSPQHSFRQVSQTVDTVLHNPP 235
              + +  S P+L L  G  +   Q +      +++  L+NPP
Sbjct: 1223 GIRRTKSSRPSLSLKIGCPN---QPTAIPSPLSIEPALNNPP 1107


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,362,789
Number of Sequences: 36976
Number of extensions: 152062
Number of successful extensions: 927
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of query: 334
length of database: 9,014,727
effective HSP length: 97
effective length of query: 237
effective length of database: 5,428,055
effective search space: 1286449035
effective search space used: 1286449035
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)