BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0590c.6
(364 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP675423 transcription factor MYB101 [Lotus japonicus] 235 8e-63
TC11120 UP|Q84PP4 (Q84PP4) Transcription factor MYB102, complete 131 2e-61
NP675421 transcription factor MYB103 [Lotus japonicus] 216 6e-57
AV408163 175 9e-45
TC20215 similar to AAS10104 (AAS10104) MYB transcription factor,... 165 1e-41
AV766688 164 2e-41
CN824947 162 6e-41
TC10416 weakly similar to UP|O04108 (O04108) MYB factor, partial... 162 1e-40
AV421932 152 7e-38
AV417320 152 9e-38
AV413379 150 3e-37
TC19713 homologue to UP|P93474 (P93474) Myb26, partial (55%) 149 9e-37
CB828471 131 2e-31
TC9457 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucros... 119 1e-27
TC8520 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucros... 115 2e-26
TC18881 similar to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucrose... 110 5e-25
TC17948 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucrose... 107 4e-24
AV776018 81 3e-16
BI420780 78 2e-15
TC12503 homologue to UP|Q9ATD9 (Q9ATD9) BNLGHi233, partial (24%) 67 5e-12
>NP675423 transcription factor MYB101 [Lotus japonicus]
Length = 1047
Score = 235 bits (600), Expect = 8e-63
Identities = 153/350 (43%), Positives = 192/350 (54%), Gaps = 16/350 (4%)
Frame = +1
Query: 1 MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANY 60
M ++ ++ G+KKGPWTPEED LVDYIQKHGHG WR LPK AGL RCGKSCRLRW NY
Sbjct: 1 MGRTPCCDEIGLKKGPWTPEEDAILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 180
Query: 61 LRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKLLKMG 120
LRPDIKRGKF+ EEE+ II LH+VLGNKWS IA +L GRTDNEIKN+WNTH+KKKLL+MG
Sbjct: 181 LRPDIKRGKFTEEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMG 360
Query: 121 LDPVTHTPRLDVLQLASILNSSL--YNNSAQFNN--PGLFGMERVVNPSQLQLLNLVTTL 176
LDPVTH PRLD L L S L L N F N + + +QL L L+ +
Sbjct: 361 LDPVTHRPRLDHLNLLSNLQQFLAATNMVTSFTNTLDSNAALRLQSDATQLAKLQLLQNI 540
Query: 177 LSCQNTNQDVWNTNNYQQNQLGGSTQWQHQTQCSQPMQLDNS-IHAFQPNQVNEENHCTT 235
L TN +N NQLG S+ T + + L+ S + + + +H
Sbjct: 541 LQVLGTNP---ASNLELLNQLGPSSSIS-DTFLHEALGLNQSKLQELYKSSIGFPSHQNL 708
Query: 236 SNPLHILEPPQLMKTNLEHQISPIASPFNHQNPMQNLLQYNGGFTSNRKRPEPSSATQSF 295
SN L LE P ++ Q+ M N S + E AT S
Sbjct: 709 SN-LQTLEVPHHLQ----------------QHYMNGGSTINSCMQSRKVVDEQLDATNSS 837
Query: 296 SSLLCNSEGMPNFNLSSLLSSTPSSSSPSTLN-----------SSSSTTF 334
S++ NS L +L+S++P S+ + SS+STTF
Sbjct: 838 STIPLNS-------LPNLVSASPQCSTVKEMENKVNPNECSNPSSTSTTF 966
>TC11120 UP|Q84PP4 (Q84PP4) Transcription factor MYB102, complete
Length = 1281
Score = 131 bits (330), Expect(2) = 2e-61
Identities = 58/74 (78%), Positives = 64/74 (86%)
Frame = +1
Query: 1 MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANY 60
M +S ++NG+KKGPWTPEEDQKLV++IQKHGHG WR LPK AGL RCGKSCRLRW NY
Sbjct: 67 MGRSPCCDENGLKKGPWTPEEDQKLVEHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 246
Query: 61 LRPDIKRGKFSLEE 74
LRPDIKRGKFS EE
Sbjct: 247 LRPDIKRGKFSPEE 288
Score = 121 bits (303), Expect(2) = 2e-61
Identities = 78/218 (35%), Positives = 114/218 (51%), Gaps = 8/218 (3%)
Frame = +2
Query: 68 GKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKLLKMGLDPVTHT 127
G F ++E+ I+ LHS+LGNKWSTIA +L GRTDNEIKN+WNTH+KKKL++MG DP+TH
Sbjct: 269 GNFLQKKEQTILHLHSILGNKWSTIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQ 448
Query: 128 PRLDVLQLASILNSSLYNNSAQFNNPGLFGMERVVNPSQLQLLNLVTTLLSCQNTNQDVW 187
PR D++ L + +N F E+ V ++LQ LN + Q++N +
Sbjct: 449 PRTDLVSTLPYLLALANMTQLMDHNHQSFD-EQAVQLAKLQYLNYL-----LQSSNNPLC 610
Query: 188 NTNNYQQNQLGGSTQWQHQTQCSQP--------MQLDNSIHAFQPNQVNEENHCTTSNPL 239
TN+Y QN L + S Q+D F ++ N+ +S PL
Sbjct: 611 MTNSYDQNALTNMEAFSLLNSISNVKENLGVDFSQMDTQTSLFS----HDGNNMASSQPL 778
Query: 240 HILEPPQLMKTNLEHQISPIASPFNHQNPMQNLLQYNG 277
H P ++ L+ Q+S F+ Q+ + N Q G
Sbjct: 779 H--HPSNMLPHFLDPQVS-----FSSQSCLNNNEQGQG 871
>NP675421 transcription factor MYB103 [Lotus japonicus]
Length = 924
Score = 216 bits (549), Expect = 6e-57
Identities = 113/195 (57%), Positives = 142/195 (71%), Gaps = 7/195 (3%)
Frame = +1
Query: 1 MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANY 60
M ++ S +++G+KKGPW+ EED+ LVDYIQKHGHG WR LP+ AGL RCGKSCRLRW NY
Sbjct: 1 MMRTPSIDESGMKKGPWSQEEDKVLVDYIQKHGHGSWRALPQLAGLNRCGKSCRLRWTNY 180
Query: 61 LRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKK--KLLK 118
LRPDIKRGKFS EEE+ II LH+ LGNKW+TIA++L GRTDNEIKN WNTH+KK KLL+
Sbjct: 181 LRPDIKRGKFSDEEEQLIINLHASLGNKWATIASHLPGRTDNEIKNLWNTHLKKKLKLLQ 360
Query: 119 MGLDPVTHTPRLDVLQLASILNSSL--YNNSAQFNNP--GLFGMERVVNPSQLQLLNLVT 174
MGLDPVTH PR D + + S L L N + F NP + + + + L L+L+
Sbjct: 361 MGLDPVTHCPRSDHMNILSNLQQILAAANIVSSFTNPCDMIHALMLHSDATNLAKLHLLQ 540
Query: 175 TLLSCQNTN-QDVWN 188
+L QN N Q+++N
Sbjct: 541 NML--QNNNFQNIYN 579
>AV408163
Length = 425
Score = 175 bits (444), Expect = 9e-45
Identities = 79/116 (68%), Positives = 92/116 (79%)
Frame = +2
Query: 1 MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANY 60
M +S EK + KG WT EED +L+ YI+ HG G WR+LPK AGL RCGKSCRLRW NY
Sbjct: 77 MGRSPCCEKAHINKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 256
Query: 61 LRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKL 116
LRPD+KRG F+ EE+E II+LHS+LGNKWS IA L GRTDNEIKNYWNTHI++KL
Sbjct: 257 LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 424
>TC20215 similar to AAS10104 (AAS10104) MYB transcription factor, partial
(35%)
Length = 464
Score = 165 bits (418), Expect = 1e-41
Identities = 70/116 (60%), Positives = 94/116 (80%)
Frame = +2
Query: 1 MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANY 60
M ++ EK G+K+G W+ EED+ L D+I+++G G W++LPKNAGL RCGKSCRLRW NY
Sbjct: 29 MGRAPCCEKVGLKRGRWSEEEDKILTDFIKQNGEGSWKSLPKNAGLLRCGKSCRLRWINY 208
Query: 61 LRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKL 116
LR D+KRG + EEEE I++LH+ LGN+WS IA +L GRTDNEIKNYWN+H+++K+
Sbjct: 209 LREDVKRGNITSEEEEIIVKLHAALGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKI 376
>AV766688
Length = 608
Score = 164 bits (415), Expect = 2e-41
Identities = 72/116 (62%), Positives = 94/116 (80%)
Frame = +2
Query: 1 MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANY 60
MA++ S +K+G++KG WT EED+KL+ Y+ ++G WR LPK AGL RCGKSCRLRW NY
Sbjct: 77 MARTPSCDKSGLRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNY 256
Query: 61 LRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKL 116
LRPDIKRG F+ EEEE II++H LGN+WS IAA L GRTDNE+KN+W+T +K+++
Sbjct: 257 LRPDIKRGHFTQEEEEIIIRMHKNLGNRWSIIAAELPGRTDNEVKNHWHTSLKRRV 424
>CN824947
Length = 738
Score = 162 bits (411), Expect = 6e-41
Identities = 72/117 (61%), Positives = 90/117 (76%)
Frame = +1
Query: 1 MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANY 60
M ++ EK G+K+G WT EED+ L YIQ G G WR+LPKNAGL RCGKSCRLRW NY
Sbjct: 151 MGRAPCCEKVGLKRGRWTAEEDELLTKYIQASGEGSWRSLPKNAGLLRCGKSCRLRWINY 330
Query: 61 LRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKLL 117
LR D+KRG S EEE I++LH+ GN+WS IA+++ GRTDNEIKNYWN+H+ +KL+
Sbjct: 331 LRGDLKRGNISDEEESLIVKLHASFGNRWSLIASHMPGRTDNEIKNYWNSHLSRKLV 501
>TC10416 weakly similar to UP|O04108 (O04108) MYB factor, partial (41%)
Length = 1046
Score = 162 bits (409), Expect = 1e-40
Identities = 71/114 (62%), Positives = 93/114 (81%)
Frame = +2
Query: 1 MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANY 60
MA++ S +K+G++KG WT EED+KL+ Y+ ++G WR LPK AGL RCGKSCRLRW NY
Sbjct: 92 MARTPSCDKSGMRKGTWTAEEDKKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNY 271
Query: 61 LRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKK 114
LRP+IKRG F+ EEEE II++H LGN+WSTIAA L GRTD+E+KN+W+T +K+
Sbjct: 272 LRPNIKRGNFTQEEEEIIIRMHKKLGNRWSTIAAELPGRTDSEVKNHWHTTLKR 433
>AV421932
Length = 402
Score = 152 bits (385), Expect = 7e-38
Identities = 65/97 (67%), Positives = 82/97 (84%)
Frame = +3
Query: 12 VKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGKFS 71
VK+G W+PEED+KL+ YI HG+G W +P+ AGL+RCGKSCRLRW NYLRPDI+RG+F+
Sbjct: 111 VKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFT 290
Query: 72 LEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYW 108
EEE+ II LH V+GN+W+ IA++L GRTDNEIKNYW
Sbjct: 291 PEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYW 401
>AV417320
Length = 369
Score = 152 bits (384), Expect = 9e-38
Identities = 68/96 (70%), Positives = 78/96 (80%)
Frame = +3
Query: 1 MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANY 60
M ++ EK G+KKGPWT EEDQ L+ YIQKHGHG WR LPK+AGL RCGKSCRLRW NY
Sbjct: 78 MVRAPCCEKIGLKKGPWTSEEDQILISYIQKHGHGNWRALPKHAGLLRCGKSCRLRWINY 257
Query: 61 LRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANL 96
LRPDIKRG F+ EEEE II++H +LGN+WS IAA L
Sbjct: 258 LRPDIKRGNFTAEEEELIIKMHELLGNRWSAIAAKL 365
>AV413379
Length = 416
Score = 150 bits (379), Expect = 3e-37
Identities = 69/105 (65%), Positives = 81/105 (76%)
Frame = +3
Query: 1 MAKSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANY 60
M +S EK KG WT EED +L+ YI+ HG G WR+LPK+AGL RCGKSCRLRW NY
Sbjct: 102 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKSAGLLRCGKSCRLRWINY 281
Query: 61 LRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIK 105
LRPD+KRG F+ +E+E II+LHS+LGNKWS IA L GRTDNEIK
Sbjct: 282 LRPDLKRGNFTPQEDELIIKLHSLLGNKWSLIAGRLAGRTDNEIK 416
>TC19713 homologue to UP|P93474 (P93474) Myb26, partial (55%)
Length = 532
Score = 149 bits (375), Expect = 9e-37
Identities = 67/112 (59%), Positives = 83/112 (73%)
Frame = +3
Query: 5 NSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPD 64
NS V+KGPWT EED L++YI HG G W TL K+AGLKR GKSCRLRW NYLRPD
Sbjct: 84 NSSHDPEVRKGPWTIEEDLILINYIANHGEGVWNTLAKSAGLKRTGKSCRLRWLNYLRPD 263
Query: 65 IKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKL 116
++RG + EE+ I++LH+ GN+WS IA +L GRTDNEIKN+W T I+K +
Sbjct: 264 VRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHI 419
>CB828471
Length = 525
Score = 131 bits (329), Expect = 2e-31
Identities = 59/76 (77%), Positives = 65/76 (84%)
Frame = +1
Query: 41 PKNAGLKRCGKSCRLRWANYLRPDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRT 100
PK AGL RCGKSCRLRWANYLRPDIKRG FS EEE+ II LH +LGN+WS IAA L GRT
Sbjct: 1 PKQAGLLRCGKSCRLRWANYLRPDIKRGNFSREEEDEIINLHELLGNRWSAIAARLPGRT 180
Query: 101 DNEIKNYWNTHIKKKL 116
DNEIKN W+TH+KK+L
Sbjct: 181 DNEIKNVWHTHLKKRL 228
>TC9457 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and
sucrose-responsive element binding factor, partial (43%)
Length = 860
Score = 119 bits (297), Expect = 1e-27
Identities = 60/142 (42%), Positives = 84/142 (58%), Gaps = 2/142 (1%)
Frame = +3
Query: 14 KGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGKFSLE 73
KGPW+PEED+ L ++KHG W + K+ R GKSCRLRW N L P ++ F+ E
Sbjct: 78 KGPWSPEEDEALQRLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTAE 254
Query: 74 EEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKLLKMGLDPVTHTP--RLD 131
E++ II+ H+ GNKW+TIA L GRTDN IKN+WN+ +K+K +D P R
Sbjct: 255 EDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASFMMDDHNAPPLKRSV 434
Query: 132 VLQLASILNSSLYNNSAQFNNP 153
A+ +++ LY N +P
Sbjct: 435 SAGAATPVSTGLYMNPPSPGSP 500
>TC8520 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and
sucrose-responsive element binding factor, partial (36%)
Length = 1778
Score = 115 bits (287), Expect = 2e-26
Identities = 51/102 (50%), Positives = 70/102 (68%)
Frame = +1
Query: 14 KGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGKFSLE 73
KGPW+PEED+ L +++HG W + K+ R GKSCRLRW N L P ++ F+ E
Sbjct: 184 KGPWSPEEDEALQKLVERHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPE 360
Query: 74 EEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKK 115
E++ II+ H+ GNKW+TIA L GRTDN IKN+WN+ +K+K
Sbjct: 361 EDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 486
>TC18881 similar to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucrose-responsive
element binding factor, partial (28%)
Length = 346
Score = 110 bits (274), Expect = 5e-25
Identities = 49/97 (50%), Positives = 65/97 (66%)
Frame = +1
Query: 14 KGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGKFSLE 73
KGPW+PEED+ L +Q HG W + K+ R GKSCRLRW N L P+++ F+ E
Sbjct: 55 KGPWSPEEDEALTRLVQVHGPKNWTAISKSIP-GRSGKSCRLRWCNQLSPEVEHRPFTPE 231
Query: 74 EEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNT 110
E+ II+ H+ GNKW+TIA L GRTDN +KN+WN+
Sbjct: 232 EDSTIIRAHARCGNKWATIARILNGRTDNAVKNHWNS 342
>TC17948 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucrose-responsive
element binding factor, partial (50%)
Length = 487
Score = 107 bits (266), Expect = 4e-24
Identities = 48/114 (42%), Positives = 73/114 (63%)
Frame = +2
Query: 3 KSNSGEKNGVKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLR 62
+SN+ + KGPW+ EED+ L +++HG W + + R GKSCRLRW N L
Sbjct: 137 RSNNPNRPERIKGPWSAEEDRILTRLVERHGARNWSLISRYIK-GRSGKSCRLRWCNQLS 313
Query: 63 PDIKRGKFSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKL 116
P ++ FS++E+E II H+ GN+W+ IA L GRTDN +KN+WN+ +K+++
Sbjct: 314 PTVEHRPFSVQEDETIIAAHARFGNRWAAIARLLPGRTDNAVKNHWNSTLKRRV 475
>AV776018
Length = 476
Score = 80.9 bits (198), Expect = 3e-16
Identities = 37/63 (58%), Positives = 46/63 (72%)
Frame = +1
Query: 70 FSLEEEEAIIQLHSVLGNKWSTIAANLQGRTDNEIKNYWNTHIKKKLLKMGLDPVTHTPR 129
F EE+ II+LH+VLGN+WS A GRTDNEIKN WN+ +KKKL + G+DPVTH P
Sbjct: 13 FHKEEDNLIIELHAVLGNRWSQDATQWPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPL 192
Query: 130 LDV 132
+V
Sbjct: 193 SEV 201
>BI420780
Length = 475
Score = 78.2 bits (191), Expect = 2e-15
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = +1
Query: 17 WTPEEDQKLVDYIQKHGHGKWRTLPK--NAGLKRCGKSCRLRWANYLRPDIKRGKFSLEE 74
W+ EED L Y+Q++G +W + + N L R KSC RW NYL+P IK+G + EE
Sbjct: 211 WSSEEDALLHAYVQQYGPREWNLVSQRMNTPLNRDTKSCLERWKNYLKPGIKKGSLTKEE 390
Query: 75 EEAIIQLHSVLGNKWSTIAANLQGRT 100
+ +I L + GNKW IAA + GRT
Sbjct: 391 QRLVILLQANYGNKWKKIAAEVPGRT 468
>TC12503 homologue to UP|Q9ATD9 (Q9ATD9) BNLGHi233, partial (24%)
Length = 957
Score = 67.0 bits (162), Expect = 5e-12
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +2
Query: 88 KWSTIAANLQGRTDNEIKNYWNTHIKKKLLKMGLDPVTHTPRLDVLQLAS 137
+WS IA + GRTDNEIKN+WNTH+ KKL+ G+DP TH P L + S
Sbjct: 152 RWSLIAGRIPGRTDNEIKNFWNTHLSKKLISQGIDPRTHKPLNPELSIPS 301
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.128 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,598,347
Number of Sequences: 28460
Number of extensions: 132149
Number of successful extensions: 1390
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of query: 364
length of database: 4,897,600
effective HSP length: 91
effective length of query: 273
effective length of database: 2,307,740
effective search space: 630013020
effective search space used: 630013020
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0590c.6