TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0590c.4
         (84 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19604 similar to UP|Q04129 (Q04129) Wound induced protein (Fra...    82  2e-17
AW719321                                                               44  5e-06
TC12769 similar to UP|Q8MRP6 (Q8MRP6) GH07623p, partial (3%)           29  0.13
BP039631                                                               25  3.3
AV408648                                                               24  4.3
TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13...    24  5.6
AV775900                                                               23  7.3
TC15811 similar to UP|RL13_ARATH (P41127) 60S ribosomal protein ...    23  7.3
TC13771                                                                23  7.3
TC14344 similar to UP|Q40310 (Q40310) Chalcone reductase, complete     23  9.5

>TC19604 similar to UP|Q04129 (Q04129) Wound induced protein (Fragment),
           partial (63%)
          Length = 500

 Score = 81.6 bits (200), Expect = 2e-17
 Identities = 48/90 (53%), Positives = 61/90 (67%), Gaps = 7/90 (7%)
 Frame = +1

Query: 2   SAATRSLIV----GAVEALKDKLGVYNRRRNYALRSLQQRVVKNNNITPNG---NSSSAA 54
           +AATR+ +V    G VEALKD+LGV   R NYALRSLQQ    N          +S+S+A
Sbjct: 73  TAATRAWVVASSVGVVEALKDQLGVC--RWNYALRSLQQHAKTNIRSYAQAKKLSSASSA 246

Query: 55  AIPSKVKRSNQEFMRKVMDLNCWGPSTTKF 84
           A+ +KVKR+  E M++VMDLNCWGPST +F
Sbjct: 247 AVSNKVKRTKDESMKRVMDLNCWGPSTARF 336


>AW719321 
          Length = 356

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 11/90 (12%)
 Frame = +2

Query: 2   SAATRSLIV----GAVEALKDKLGVYNRRRNYALRSLQQRV---VKNNNITPNGNSSSAA 54
           SAA+++ IV    GAVEALKD+ G+   R NY L+  QQ +   V + + T   + SS+A
Sbjct: 44  SAASKAWIVAASVGAVEALKDQ-GIC--RWNYVLKHAQQHLKNRVGSLSQTRILSCSSSA 214

Query: 55  AIPSKVK----RSNQEFMRKVMDLNCWGPS 80
              +K+K    +  +E +R VM L+CWGP+
Sbjct: 215 LFANKLKGEKAKQAEESLRTVMYLSCWGPN 304


>TC12769 similar to UP|Q8MRP6 (Q8MRP6) GH07623p, partial (3%)
          Length = 469

 Score = 29.3 bits (64), Expect = 0.13
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 25  RRRNYALRSLQQ-RVVKNNNITPNGNSSSAAAIPSKVKRSNQ--EFMRKVMDLNCWG 78
           R+   A+RS+ Q R      +  +G + + A  P    R  Q  E +RKVM +NCWG
Sbjct: 343 RKCKTAVRSIHQNRSRLFAGVVGSGVTGAMAGNPDAEHRLRQTDESLRKVMYMNCWG 173


>BP039631 
          Length = 554

 Score = 24.6 bits (52), Expect = 3.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 48  GNSSSAAAIPSKVKRSNQEFMRKVMDLNCWGPSTTK 83
           GNS  + A       SNQ  +R ++ LNC G    K
Sbjct: 211 GNSVGSLACVIAASDSNQTLVRGIVLLNCAGGMNNK 318


>AV408648 
          Length = 430

 Score = 24.3 bits (51), Expect = 4.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 25  RRRNYALRSLQQRVVKNNNITPNGNSSSAA 54
           RRR    R  Q++  KN   TP+G++++AA
Sbjct: 136 RRRREL*RLRQKKRSKNETRTPSGHAAAAA 47


>TC13744 weakly similar to UP|Q39126 (Q39126) HYP1 protein (T4P13.21
           protein), partial (26%)
          Length = 744

 Score = 23.9 bits (50), Expect = 5.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 33  SLQQRVVKNNNITPNGNSSSAAAIPSKVKRSNQE 66
           SLQ  ++  NNI  NG  ++   I   +KRS  E
Sbjct: 609 SLQA*ILNPNNIQENGTQATPKKIK*NLKRS*ME 508


>AV775900 
          Length = 523

 Score = 23.5 bits (49), Expect = 7.3
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +2

Query: 2   SAATRSLIVGAVEALKDKLGVYNRRRNYALRS 33
           SA + + +VGA EA   + G   RRR   L++
Sbjct: 314 SAGSEAGLVGATEAQTGRPGYRRRRRRRCLKT 409


>TC15811 similar to UP|RL13_ARATH (P41127) 60S ribosomal protein L13 (BBC1
          protein homolog), complete
          Length = 981

 Score = 23.5 bits (49), Expect = 7.3
 Identities = 9/17 (52%), Positives = 14/17 (81%)
 Frame = +2

Query: 33 SLQQRVVKNNNITPNGN 49
          SL+  +VK+NN+ PNG+
Sbjct: 20 SLR*AMVKHNNVIPNGH 70


>TC13771 
          Length = 474

 Score = 23.5 bits (49), Expect = 7.3
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = -1

Query: 23  YNRRRNYALRSLQQRVVKNNNITPNGNSS 51
           + + RNY L SL   ++  +N+T   NSS
Sbjct: 246 FTKIRNYFLSSLSHTILLVSNLTKLRNSS 160


>TC14344 similar to UP|Q40310 (Q40310) Chalcone reductase, complete
          Length = 1180

 Score = 23.1 bits (48), Expect = 9.5
 Identities = 12/32 (37%), Positives = 17/32 (52%)
 Frame = +1

Query: 49  NSSSAAAIPSKVKRSNQEFMRKVMDLNCWGPS 80
           NSS+    P     + Q + RKV+  NC+G S
Sbjct: 400 NSSTGVLGPLSDPLAPQFYTRKVLISNCYGGS 495


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,197,875
Number of Sequences: 28460
Number of extensions: 11912
Number of successful extensions: 69
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of query: 84
length of database: 4,897,600
effective HSP length: 60
effective length of query: 24
effective length of database: 3,190,000
effective search space: 76560000
effective search space used: 76560000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)