BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0371a.1
(409 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP068931 173 4e-44
TC8792 similar to GB|AAM00218.1|19879972|AF362990 beta-D-xylosid... 66 1e-11
AV775420 45 3e-05
TC19239 homologue to UP|Q9ZU04 (Q9ZU04) Beta-glucosidase (Fragm... 40 5e-04
TC17591 similar to UP|Q9FLG1 (Q9FLG1) Beta-xylosidase, partial (... 40 5e-04
TC19191 similar to UP|BAC98299 (BAC98299) LEXYL2 protein (Fragme... 36 0.013
TC9638 33 0.066
TC18444 similar to UP|Q8W011 (Q8W011) Beta-D-xylosidase, partial... 33 0.086
TC8672 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partia... 27 4.7
BP038802 27 6.2
TC20019 high affinity ammonium transporter [Lotus corniculatus v... 27 8.1
TC8022 homologue to UP|Q9AXQ2 (Q9AXQ2) Mitochondrial processing ... 27 8.1
>BP068931
Length = 471
Score = 173 bits (439), Expect = 4e-44
Identities = 77/100 (77%), Positives = 89/100 (89%)
Frame = -1
Query: 302 TIPSPGPETITNVCEAITCVVIIISGRPLVIEPYLALIDALVAGWLPGSEGQGVADVLYG 361
T+P PGP TI+NVC +I CVV++I+GRP+VI+PYL IDALVA WLPG+EGQGVAD+L+G
Sbjct: 471 TLPEPGPSTISNVCGSIQCVVVLITGRPVVIQPYLPKIDALVAAWLPGTEGQGVADLLFG 292
Query: 362 DYGFTGKLPRTWFKSVDQLPMNVGDPHYDPLFPFGFGLST 401
DY FTGKL RTWFK VDQLPMNVGD HYDPLFPFGFGL+T
Sbjct: 291 DYKFTGKLARTWFKRVDQLPMNVGDKHYDPLFPFGFGLTT 172
>TC8792 similar to GB|AAM00218.1|19879972|AF362990 beta-D-xylosidase
{Prunus persica;} , partial (90%)
Length = 1636
Score = 65.9 bits (159), Expect = 1e-11
Identities = 78/306 (25%), Positives = 135/306 (43%), Gaps = 39/306 (12%)
Frame = +3
Query: 134 VKNKLIPMSRIDDAVKRILWVKFMMGIFENPFADYSLVGYLGIQK-----HRKLAREAVR 188
+KN LI + ++ A+ ++ V+ +G+F+ + + G LG + H +LA EA R
Sbjct: 27 IKNGLITENDLNLALANLITVQMRLGMFDGEPSAHPY-GNLGPRDVCTPAHNELALEAAR 203
Query: 189 KSLVLLKNGISAEKPILPLTKKVPKIL-----VAGTHADNLGYQCGGWTIEWQGVSG--- 240
+ +VLL+N +A P+ P + ++ V T N G+T QG++
Sbjct: 204 QGIVLLENKGNA-LPLSPTRHRTVGVIGPNSDVTVTMIGNYAGVACGYTTPLQGIARYVK 380
Query: 241 NNHLEGTTILTAIKNTVDPETTVIYKENPDTEFVESNGFSYAIVVVGEHPYAEME-GDSM 299
H G ++ + ++ +++ T +VVVG E E D +
Sbjct: 381 TIHQAGCRDVSCRGTELFGNAEIVARQSDAT-----------VVVVGLDQSIEAEFRDRV 527
Query: 300 NLTIPSPGPETITNVCEAIT--CVVIIISGRPLVIE-----PYLALIDALVAGWLPGSEG 352
L +P E ++ V A V++I+SG P+ ++ P ++ I L G+ + G
Sbjct: 528 GLLLPGHQQELVSRVARAARGPVVLVIMSGGPVDVQFAKDDPKISAI--LWVGYPGQAGG 701
Query: 353 QGVADVLYGDYGFTGKLPRTWFKS--VDQLPMNVGDPHYDP----------------LFP 394
+ADV++G G+LP TW+ V +LPM D +P +FP
Sbjct: 702 TAIADVIFGRTNPGGRLPNTWYPQSYVAKLPMTNMDMRPNPASGYPGRTYRFYKGPVVFP 881
Query: 395 FGFGLS 400
FG GLS
Sbjct: 882 FGHGLS 899
>AV775420
Length = 457
Score = 44.7 bits (104), Expect = 3e-05
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Frame = +1
Query: 137 KLIPMSRIDDAVKRILWVKFMMGIFE-NPFA-DYSLVGYLGI--QKHRKLAREAVRKSLV 192
K +P+S+ID A+ + ++ +G+F+ NP Y +G + +++ KLA EA R +V
Sbjct: 100 KKVPISQIDRALHNLFSIRIRLGLFDGNPSKLTYGSIGPNQVCSKQNLKLALEAARNGIV 279
Query: 193 LLKNGISAEKPILPLTKKVPKILVAGTHAD 222
LLK S ILPL K P + V G +A+
Sbjct: 280 LLKKTAS----ILPLPKTNPSMAVIGPNAN 357
>TC19239 homologue to UP|Q9ZU04 (Q9ZU04) Beta-glucosidase (Fragment) ,
partial (69%)
Length = 453
Score = 40.4 bits (93), Expect = 5e-04
Identities = 27/102 (26%), Positives = 50/102 (48%), Gaps = 7/102 (6%)
Frame = +1
Query: 297 DSMNLTIPSPGPETITNVCEAIT--CVVIIISGRPLVIEPYLA---LIDALVAGWLPGSE 351
D +N+ +P ++ V A +++I+SG + + A + L G+ +
Sbjct: 16 DRVNIVLPGQQQLLVSEVANASRGPVILVIMSGGGMDVSFAKANDKITSILWVGYPGEAG 195
Query: 352 GQGVADVLYGDYGFTGKLPRTWFKS--VDQLPMNVGDPHYDP 391
G +ADV++G Y +G+LP TW+ V+ +PM + DP
Sbjct: 196 GAAIADVIFGFYNPSGRLPMTWYPESYVENVPMTNMNMRADP 321
>TC17591 similar to UP|Q9FLG1 (Q9FLG1) Beta-xylosidase, partial (24%)
Length = 582
Score = 40.4 bits (93), Expect = 5e-04
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Frame = +3
Query: 70 ITGFLKNTLHFKGFVISDFEGIDRITSPPHANFTYSVEAGVS--AGIDMFMIPKFFTEFI 127
+ G ++ G+++SD + ++ + H T A S AG+D+ ++
Sbjct: 3 LKGVIRGQWKLNGYIVSDCDSVEVLFKDQHYTKTPEEAAAKSILAGLDLDC-----GSYL 167
Query: 128 NDLTI-LVKNKLIPMSRIDDAVKRILWVKFMMGIFE-NPFADYSLVGYLGI-------QK 178
T VK L+ + I++A+ +G F+ NP S + Y G+ +
Sbjct: 168 GKYTEGAVKQGLLDEASINNAISNNFATLMRLGFFDGNP----STLPYGGLGPKDVCTSE 335
Query: 179 HRKLAREAVRKSLVLLKNGISAEKPILPLT-KKVPKILVAGTHAD 222
+++LAREA R+ +VLLKN + LPL+ K + + V G +A+
Sbjct: 336 NQELAREAARQGIVLLKNSPGS----LPLSAKSIKSLAVIGPNAN 458
>TC19191 similar to UP|BAC98299 (BAC98299) LEXYL2 protein (Fragment),
partial (31%)
Length = 770
Score = 35.8 bits (81), Expect = 0.013
Identities = 22/67 (32%), Positives = 33/67 (48%), Gaps = 18/67 (26%)
Frame = +2
Query: 352 GQGVADVLYGDYGFTGKLPRTWFKS--VDQLPMNVGDPHYDP----------------LF 393
G +ADV++G + +G+LP TW+ VD++PM + DP +F
Sbjct: 14 GAAIADVIFGFHNPSGRLPMTWYPQSYVDKVPMTNMNMRPDPTTGYPGRTYRFYKGETVF 193
Query: 394 PFGFGLS 400
FG GLS
Sbjct: 194 SFGDGLS 214
>TC9638
Length = 482
Score = 33.5 bits (75), Expect = 0.066
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +1
Query: 364 GFTGKLPRTWFKSVDQL 380
GFTGKL R WFK VDQL
Sbjct: 67 GFTGKLARAWFKIVDQL 117
>TC18444 similar to UP|Q8W011 (Q8W011) Beta-D-xylosidase, partial (12%)
Length = 387
Score = 33.1 bits (74), Expect = 0.086
Identities = 24/76 (31%), Positives = 35/76 (45%), Gaps = 17/76 (22%)
Frame = +2
Query: 342 LVAGWLPGSEGQGVADVLYGDYGFTGKLPRTWF-KSVDQLPMNVGDPHYDP--------- 391
L AG+ G +A V++GD+ G+LP TW+ K ++PM DP
Sbjct: 17 LWAGYPGELGGIALAQVIFGDHNPGGRLPITWYPKDYIKVPMTDMRMRADPATGYPGRTY 196
Query: 392 -------LFPFGFGLS 400
L+ FG+GLS
Sbjct: 197 RFYKGPKLYEFGYGLS 244
>TC8672 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (26%)
Length = 665
Score = 27.3 bits (59), Expect = 4.7
Identities = 17/49 (34%), Positives = 25/49 (50%)
Frame = +3
Query: 302 TIPSPGPETITNVCEAITCVVIIISGRPLVIEPYLALIDALVAGWLPGS 350
+I SP P +I +V CV + SGR I P L+ + L+ +P S
Sbjct: 87 SISSPSPSSIIHVYHNHACVQVPHSGR---IMPTLSTLTLLLQNQIPNS 224
>BP038802
Length = 533
Score = 26.9 bits (58), Expect = 6.2
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = -1
Query: 294 MEGDSMNLTIPSPGPET 310
+EGDS+NL PSP P +
Sbjct: 467 LEGDSVNLNSPSPSPSS 417
>TC20019 high affinity ammonium transporter [Lotus corniculatus var.
japonicus]
Length = 1521
Score = 26.6 bits (57), Expect = 8.1
Identities = 12/41 (29%), Positives = 21/41 (50%)
Frame = +1
Query: 307 GPETITNVCEAITCVVIIISGRPLVIEPYLALIDALVAGWL 347
G +T+VC + I+ V++P+ A+I VA W+
Sbjct: 949 GHWNVTDVCNGLLGGFAAITSGCSVVDPWAAIICGFVAAWV 1071
>TC8022 homologue to UP|Q9AXQ2 (Q9AXQ2) Mitochondrial processing peptidase
beta subunit, partial (70%)
Length = 1441
Score = 26.6 bits (57), Expect = 8.1
Identities = 10/26 (38%), Positives = 19/26 (72%)
Frame = +2
Query: 317 AITCVVIIISGRPLVIEPYLALIDAL 342
++T + ++S PL++EP+LAL+ L
Sbjct: 215 SLTTCMQLLSSTPLLVEPFLALLRTL 292
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.140 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,192,821
Number of Sequences: 28460
Number of extensions: 98475
Number of successful extensions: 401
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of query: 409
length of database: 4,897,600
effective HSP length: 92
effective length of query: 317
effective length of database: 2,279,280
effective search space: 722531760
effective search space used: 722531760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0371a.1