TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0365.17
         (568 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19341 similar to UP|Q9CAD1 (Q9CAD1) GMP synthase, partial (28%)      30  1.4

>TC19341 similar to UP|Q9CAD1 (Q9CAD1) GMP synthase, partial (28%)
          Length = 484

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +1

Query: 391 NSYPNASDSALPKEHHIILWRTLLS-PRVLTVGFASSDYTLCGYNPQL-VSRQFGLSQVL 448
           +S  +A+ SAL     +++WR+LLS PR            LC    +L +S+ FG + V+
Sbjct: 232 SSSASAAMSALDTRRSMVVWRSLLSTPR------------LCSPPTRLAISKLFG*AMVM 375

Query: 449 PNTLFDKSLVLYPGTIKRAS 468
              LF    +L PG  K  S
Sbjct: 376 KPLLFLLVSMLLPGVSKAPS 435


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,980,524
Number of Sequences: 28460
Number of extensions: 165143
Number of successful extensions: 836
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of query: 568
length of database: 4,897,600
effective HSP length: 95
effective length of query: 473
effective length of database: 2,193,900
effective search space: 1037714700
effective search space used: 1037714700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)