TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0348.15
         (242 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB828260                                                               60  3e-10
BP038017                                                               55  8e-09
BP066148                                                               42  1e-06
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re...    36  0.005
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp...    36  0.007
AV408383                                                               27  2.4
TC9245                                                                 25  9.2
BP059885                                                               25  9.2

>CB828260 
          Length = 557

 Score = 60.5 bits (145), Expect = 3e-10
 Identities = 27/49 (55%), Positives = 37/49 (75%)
 Frame = +3

Query: 1   LTEEEKVQVDSMNNNWVPPRHMLATLKENNPGNLSTITQVYNRIKKVKE 49
           L  EEK QV+ M+ +WV PR ML TLKENNP NL+TI+Q+Y   K++++
Sbjct: 402 LNSEEKEQVEKMSKSWVLPRKMLLTLKENNPLNLTTISQIYGACKRLRK 548


>BP038017 
          Length = 570

 Score = 55.5 bits (132), Expect = 8e-09
 Identities = 36/153 (23%), Positives = 63/153 (40%)
 Frame = +2

Query: 33  NLSTITQVYNRIKKVKELDCGPLTEMQYLLKKLAEANYVHFKRHEEDSGVIMELFWSHPN 92
           N +  T V +  K+    D   L  + Y  K   +    ++    +D   ++ +FW+   
Sbjct: 113 NTTPFTYVKSSQKRTLGRDAQNL--LNYFKKMQGKNPGFYYAIQLDDENRMINVFWADAR 286

Query: 93  AIKLFNTFPHVVIMDCTYKTNKFQIPLLEMVGLTSTGLTYSIAFCYMTRERTPDYVWALE 152
           +   +N F   VI D  Y+ N++Q+P     G+   G         +  E    + W   
Sbjct: 287 SRSAYNYFGDAVIFDTMYRPNQYQVPFAPFTGVNHHGQNVLFGCALLLDESESSFTWLFR 466

Query: 153 CMKSLLADPARLPGVIVTDRELALLSAVRNIFP 185
              S + D  R P  I TD++ A+ +AV  +FP
Sbjct: 467 TWLSAMND--RPPVSITTDQDRAIQAAVAQVFP 559


>BP066148 
          Length = 477

 Score = 42.4 bits (98), Expect(2) = 1e-06
 Identities = 19/28 (67%), Positives = 23/28 (81%)
 Frame = +1

Query: 19  PRHMLATLKENNPGNLSTITQVYNRIKK 46
           PR ML TLKENNP NL+TI+Q+Y +I K
Sbjct: 88  PRKMLLTLKENNPSNLTTISQIYIQIYK 171



 Score = 25.4 bits (54), Expect(2) = 1e-06
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 5  EKVQVDSMNNNWVPP 19
          EK QV+ M  +WVPP
Sbjct: 45 EKEQVEKMTRSWVPP 89


>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
           protein-like, partial (4%)
          Length = 660

 Score = 36.2 bits (82), Expect = 0.005
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
 Frame = +2

Query: 10  DSMNNNWVPPRHMLATLKENNPGNLS---TITQVYNRIKKVKE--LDCGPLTEMQYLLKK 64
           D MN   V   H++A +     G+ S   T T + N I K K   +  G        L+ 
Sbjct: 2   DGMNLYGVRACHIMALMLGPKGGHESLGFTKTDLSNHIAKPKRERIQNGDAAAALSYLEG 181

Query: 65  LAEANYVHFKRHEEDSGVIME-LFWSHPNAIKLFNTFPHVVIMDCTYKTNKFQIPLL 120
            A+ + + F +  +     +E LFW    +   +N F  V+  D TYK NK+  PL+
Sbjct: 182 KADNDPMFFYKFTKTGDESLENLFWCDGVSRMDYNVFGDVIAFDSTYKKNKYNKPLV 352


>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transposase-like
           {Oryza sativa (japonica cultivar-group);}, partial (8%)
          Length = 488

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 23/95 (24%), Positives = 35/95 (36%)
 Frame = +1

Query: 58  MQYLLKKLAEANYVHFKRHEEDSGVIMELFWSHPNAIKLFNTFPHVVIMDCTYKTNKFQI 117
           +QY  +KL E +  +     +D   I  +FW     +  +  F  +V +D TY T+    
Sbjct: 58  LQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDMVSLDSTYCTHSSNR 237

Query: 118 PLLEMVGLTSTGLTYSIAFCYMTRERTPDYVWALE 152
           PL    G              +  E T  Y W  E
Sbjct: 238 PLAVFSGFNHHRKAVIFGAALLYDETTESY*WLFE 342


>AV408383 
          Length = 417

 Score = 27.3 bits (59), Expect = 2.4
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -1

Query: 96  LFN--TFPHVVIMDCTYKTNKFQIPLLE 121
           LFN  T  H+VI  C Y+T + ++PL++
Sbjct: 417 LFNISTLTHIVIPVCWYRTTR*RVPLID 334


>TC9245 
          Length = 583

 Score = 25.4 bits (54), Expect = 9.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 16  WVPPRHMLATLKENNPGNLSTITQVYNRIKKV 47
           WVPP   L    ++   +  ++TQ+Y  +K +
Sbjct: 140 WVPPNRYLRISLDSFASSTPSMTQIYTNMKPI 45


>BP059885 
          Length = 399

 Score = 25.4 bits (54), Expect = 9.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 9   VDSMNNNWVPPRHMLATLKENNPGN 33
           + +M NN  PP H L    +NN G+
Sbjct: 314 ISTMGNNRRPPHHPLQAHHQNNTGH 388


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,803,496
Number of Sequences: 28460
Number of extensions: 64614
Number of successful extensions: 251
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of query: 242
length of database: 4,897,600
effective HSP length: 88
effective length of query: 154
effective length of database: 2,393,120
effective search space: 368540480
effective search space used: 368540480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)