BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.9
(569 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP039423 86 1e-17
BP048413 57 6e-09
BP068105 54 5e-08
BP035245 54 9e-08
BP035392 46 1e-05
BP050427 42 2e-04
BP082564 37 0.011
BP040733 36 0.019
TC20020 34 0.073
BP051187 32 0.28
TC8570 similar to UP|Q9FLM5 (Q9FLM5) N-hydroxycinnamoyl/benzoylt... 30 0.81
BP051017 30 1.1
BP054936 30 1.1
TC20096 30 1.4
AV772031 30 1.4
TC11963 29 2.3
AV426406 28 3.1
BP078616 28 3.1
TC13796 homologue to UP|Q9M7I2 (Q9M7I2) WD-repeat cell cycle reg... 28 5.2
AV408193 28 5.2
>BP039423
Length = 566
Score = 86.3 bits (212), Expect = 1e-17
Identities = 48/133 (36%), Positives = 74/133 (55%)
Frame = +1
Query: 39 PFSLDMVLVDSKGDKIHATVRKTLIYRFQSLLTEGRVYQISFFGVGESGRDFRTTGHAFK 98
P+++++VL+D +G KI A ++K + +F+ EG VY+I++F VG++G FR HAFK
Sbjct: 34 PYAINLVLIDEEGVKIEAYIKKGYMSKFRGEFAEGNVYKITYFAVGDNGGSFRACEHAFK 213
Query: 99 INFQIHTFVCVVTNTPINHSPYSFMAISEIMFNDPDASFLIDVIGILTGASGEHEFEKDG 158
I F T + I + +EI ++ FLID IG+L E ++EK G
Sbjct: 214 IFFTSRTRAVPDFSDVIPTVGLTLKNSAEIKGTLGESDFLIDYIGLLAELPSERQYEKSG 393
Query: 159 VSQKKITLELDQD 171
+KI LEL D
Sbjct: 394 NITRKIELELIDD 432
>BP048413
Length = 542
Score = 57.4 bits (137), Expect = 6e-09
Identities = 34/127 (26%), Positives = 63/127 (48%), Gaps = 2/127 (1%)
Frame = -3
Query: 231 QIKDLTEKSYCVVLGTMKYIPDGMDWYYPAC-KCSKKVYPADGMYFCEACNRHVASPLYK 289
Q+ ++ ++ Y V + + + G W Y AC KC +K + + C C + + +
Sbjct: 540 QLNEVQKECYVVTVAXIDKVCVGNGWSYEACFKCXRKADCSSLPFTCPKCGKKNTETVPR 361
Query: 290 FRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKAGP-DSPNVPSDILDLIDRT 348
FR+++ V + N++ FVL+D+E +VK L G D+ VP I ++ +
Sbjct: 360 FRVEVMVSYNNNSSKFVLWDRECIXLVKXTAIDLKKXLLDEGEFDAMAVPEPIDCILGKL 181
Query: 349 FLFKIEV 355
F FK++V
Sbjct: 180 FAFKVKV 160
>BP068105
Length = 476
Score = 54.3 bits (129), Expect = 5e-08
Identities = 34/108 (31%), Positives = 52/108 (47%), Gaps = 8/108 (7%)
Frame = +2
Query: 173 IHNVYGATKILFNPAIDEATKIRER--------NDPASQVLSQLQDSGMIYVEEDLLRQT 224
I NV AT +L+NP EA RE + P +++ + +I +EE+L R
Sbjct: 152 IQNVMNATILLWNPDTAEAVCFREGLALHGMDGDMPLAEIDDDDDEVRVITLEEELGRLY 331
Query: 225 DGKTIEQIKDLTEKSYCVVLGTMKYIPDGMDWYYPACKCSKKVYPADG 272
K I ++ D TE +V+ + + +G W+Y AC C K V DG
Sbjct: 332 PRKNISELNDTTEDGIFIVMAKICGLVEGDKWWYSACSCHKAVTVEDG 475
>BP035245
Length = 414
Score = 53.5 bits (127), Expect = 9e-08
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = +1
Query: 140 DVIGILTGASGEHEFEKDGVSQKKITLELDQDG 172
+V GILTGASG+ EFEKDG QK IT ELDQDG
Sbjct: 7 NVXGILTGASGQQEFEKDGTKQKMITXELDQDG 105
>BP035392
Length = 464
Score = 46.2 bits (108), Expect = 1e-05
Identities = 21/85 (24%), Positives = 42/85 (48%)
Frame = +2
Query: 214 IYVEEDLLRQTDGKTIEQIKDLTEKSYCVVLGTMKYIPDGMDWYYPACKCSKKVYPADGM 273
+ + +D+L KTI Q+ + E++ +V G + W YP+C C ++ G+
Sbjct: 206 VNMRQDMLNLHPKKTISQLSESDEEAIYIVHGGIVAALKNEAWTYPSCICHGELIVRTGV 385
Query: 274 YFCEACNRHVASPLYKFRIQLRVMN 298
Y C C R + + ++R+ + V +
Sbjct: 386 YECVTCQRFFYTMIRRYRVNVEVFD 460
>BP050427
Length = 508
Score = 42.4 bits (98), Expect = 2e-04
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = -1
Query: 186 PAIDEATKIRE----RNDPASQVLSQLQDSGMIYV---EEDLLRQTDGKTIEQIKDLTEK 238
P I EA IR+ A L++ +D +++ EE+ L K ++++ + E
Sbjct: 346 PPIVEAVTIRDGLALHGIEADMPLAESEDDDDVHILTQEEEFLTLYPRKDLKELNETEED 167
Query: 239 SYCVVLGTMKYIPDGMDWYYPACKCSKKVYPADGMY 274
V+ + + +G W+Y AC C K V DG +
Sbjct: 166 GVFTVVARVTSLAEGEKWWYSACSCHKAVTTEDGTF 59
>BP082564
Length = 355
Score = 36.6 bits (83), Expect = 0.011
Identities = 27/51 (52%), Positives = 34/51 (65%), Gaps = 3/51 (5%)
Frame = -2
Query: 521 VAPNDSDDNASAGGEV--SPQSKRPSPSAVDVKIGSVGS-KKILKSVKKEK 568
V+PN + + S E+ SP SKRPSP V+V IG V + KK+LK VKKEK
Sbjct: 354 VSPNPTPEKFSLN-EI*YSPPSKRPSPVDVEV-IGFVSAGKKLLKIVKKEK 208
>BP040733
Length = 457
Score = 35.8 bits (81), Expect = 0.019
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 214 IYVEEDLLRQTDGKTIEQIKD---LTEKSYCVVLGTMKYIPDGMDWYYPACKCSKKVYPA 270
+ + +D+L KTI Q+ + ++++ +V G + W YP+C C ++
Sbjct: 235 VNMRQDMLNLHPKKTISQLSESDEFSQEAIYIVHGGIVAALKNEAWTYPSCICHGELIVR 414
Query: 271 DGMYFCEACNR 281
G+Y C C R
Sbjct: 415 TGVYECVTCQR 447
>TC20020
Length = 561
Score = 33.9 bits (76), Expect = 0.073
Identities = 17/46 (36%), Positives = 27/46 (57%)
Frame = +1
Query: 34 YGSKLPFSLDMVLVDSKGDKIHATVRKTLIYRFQSLLTEGRVYQIS 79
YG+ L + + G KI A+ RK +I +F+ L EG+VY+I+
Sbjct: 73 YGAHLLSIFASPYLQTMGQKIEASARKAMISKFRLELCEGKVYKIA 210
>BP051187
Length = 521
Score = 32.0 bits (71), Expect = 0.28
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 8 ISTINPSKETWNIVAKVQRLWLSPSLYGSKLPFSLDMVLVDSK 50
+ST K+ W I +V R+W ++ P ++ +VL+D+K
Sbjct: 484 VSTF*HGKDIWRIQVRVLRMWEMCPIFEPGKPLAVQLVLIDAK 356
>TC8570 similar to UP|Q9FLM5 (Q9FLM5)
N-hydroxycinnamoyl/benzoyltransferase-like protein,
partial (91%)
Length = 1551
Score = 30.4 bits (67), Expect = 0.81
Identities = 11/29 (37%), Positives = 19/29 (64%)
Frame = +1
Query: 353 IEVSNSSNSIYEPSYRVKKFCYDPEIINQ 381
IE +++N++YE + FC+DPE + Q
Sbjct: 706 IEDKSNTNTLYEDEMLYRSFCFDPEKLKQ 792
>BP051017
Length = 522
Score = 30.0 bits (66), Expect = 1.1
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -1
Query: 344 LIDRTFLFKIEVSNSSNSIYEPSYRVKKFCYDPEIINQFISN----SPHLMYDESNPFYF 399
++ +LFK+E Y+ S++VKK C + +I +F + +P D +
Sbjct: 519 IVGNEYLFKVEKEFDHGVKYDGSFKVKKICDNIAVIEKFKDHNAVPTPKKKLDPAQLHLM 340
Query: 400 LATPTSVL 407
+ P +VL
Sbjct: 339 IYRPLNVL 316
>BP054936
Length = 537
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 112 NTPINHSPYSFMAISEIMFNDPDASFLIDVIGILTGASGEHEFEKDGVSQKKITLELDQD 171
+T + +P++ +EI + +L+DVIG L G S E ++ K + I +EL D
Sbjct: 150 HTTLTPAPFTQPLAAEIALTMGQSDYLVDVIG-LVGVSEEKQYLKSFKVTRVIHIELTDD 326
>TC20096
Length = 503
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/46 (34%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
Frame = -3
Query: 5 IYVISTINPSKETWNIVAKVQRLW-LSPSLYGSKLPFSLDMVLVDS 49
+Y + +I +ETW I +V RLW + P + SK +++ ++L+DS
Sbjct: 162 MYPVCSICSGQETWKIKGRVLRLWEMFPVGHISKX-YAMHLMLIDS 28
>AV772031
Length = 599
Score = 29.6 bits (65), Expect = 1.4
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = -3
Query: 47 VDSKGDKIHATVRKTLIYRFQSLLTEGRVYQISFF 81
+ +K KI A +RK++I ++++ + G+VY+I +F
Sbjct: 411 IKAKPLKIEAIIRKSMIRKYRAEIA*GKVYKIIYF 307
>TC11963
Length = 491
Score = 28.9 bits (63), Expect = 2.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 390 MYDESNPFYFLATPTSVLKQESINPEISKDLNVEFAVAGELPNTDSPP 437
+++ SNP+ F SVL S S ++ E A E+P++ P
Sbjct: 207 VFNTSNPYRFCTNHGSVLSSNSCFDSFSSEMKSELPSAAEVPSSCPTP 64
>AV426406
Length = 407
Score = 28.5 bits (62), Expect = 3.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 497 KMDCLKTARDEKLKTLHAEIIEAVVAPNDSDDNASAGGEV 536
+M L DE +KTL+ ++A V D DN A GE+
Sbjct: 173 EMATLDAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEI 292
>BP078616
Length = 466
Score = 28.5 bits (62), Expect = 3.1
Identities = 17/41 (41%), Positives = 21/41 (50%)
Frame = -2
Query: 394 SNPFYFLATPTSVLKQESINPEISKDLNVEFAVAGELPNTD 434
S P + TPTSVLK ES +P I EF++ L D
Sbjct: 210 SAPLLIMGTPTSVLKGESSSPIIE-----EFSLRNSLDQLD 103
>TC13796 homologue to UP|Q9M7I2 (Q9M7I2) WD-repeat cell cycle regulatory
protein, partial (13%)
Length = 529
Score = 27.7 bits (60), Expect = 5.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 244 LGTMKYIPDGMDWYYPACKCSKKVYPA 270
+ T+ YIP M Y P C C +++ A
Sbjct: 324 ISTISYIPR*MQKYSPRCSCCSEIFSA 244
>AV408193
Length = 338
Score = 27.7 bits (60), Expect = 5.2
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +3
Query: 361 SIYEPSYRVKKFCYDPEIINQFISNSPHLMYDESNPFYFLATPTSVLKQES 411
S+Y+ + R++ D ++N SNSPH+ + + +P + A + L++ +
Sbjct: 135 SVYDFAQRLRNLSADVNLVNW--SNSPHVGHYKHHPIQYRAAVSQFLEKSA 281
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,879,059
Number of Sequences: 28460
Number of extensions: 113791
Number of successful extensions: 558
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of query: 569
length of database: 4,897,600
effective HSP length: 95
effective length of query: 474
effective length of database: 2,193,900
effective search space: 1039908600
effective search space used: 1039908600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0346.9