TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0346.11
         (564 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12572 similar to PIR|T46032|T46032 WD-40 repeat regulatory pro...    42  3e-04
TC15640 similar to GB|AAP37794.1|30725544|BT008435 At3g63460 {Ar...    39  0.002
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti...    38  0.005
BP034655                                                               37  0.009
BP085186                                                               37  0.009
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ...    35  0.025
TC13152 similar to UP|Q84XX6 (Q84XX6) Leunig (Fragment), partial...    35  0.032
TC11210 similar to GB|AAP47478.1|32331901|AY164904 RTNLB7 {Oryza...    34  0.072
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)           34  0.072
TC10816 homologue to UP|CAE45585 (CAE45585) Coatomer alpha subun...    33  0.094
TC9693 similar to UP|COPP_MOUSE (O55029) Coatomer beta' subunit ...    33  0.12
AV407983                                                               33  0.16
TC15924 weakly similar to GB|BAC21577.1|24060129|AP005438 G-prot...    33  0.16
TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear phospho...    33  0.16
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)           33  0.16
TC18764 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding prote...    32  0.21
AV416122                                                               32  0.27
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)         32  0.36
AV410716                                                               32  0.36
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (...    31  0.47

>TC12572 similar to PIR|T46032|T46032 WD-40 repeat regulatory protein tup1
           homolog - Arabidopsis                thaliana
           {Arabidopsis thaliana;}, partial (51%)
          Length = 770

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 43/182 (23%), Positives = 77/182 (41%), Gaps = 9/182 (4%)
 Frame = +3

Query: 316 KNTKVVGIHCNPI-------EPDILLTCGNDHYARVWDIRRMETGSSIYDLKHNRVVSSA 368
           K  KV+  H +P+       +  ++++   D   R+WD        ++ D   N  VS  
Sbjct: 12  KCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDASTGHCMKTLID-DENPPVSFV 188

Query: 369 YFSPVSGNKILTTSLDNRLRVWDSIFGKMDSPSREIVHSHDFNRYLTPFKAEWDPK--DP 426
            FSP +   IL  +LDN LR+W                ++   R+L  +    + K    
Sbjct: 189 KFSP-NAKFILVGTLDNNLRLW----------------NYSTGRFLKTYTGHVNSKYCIS 317

Query: 427 SESLAVVGRYISENYNGAALHPIDFIDVSTGKLVAEVMDPNITTISPVNKLHPNDDILAS 486
           S      G+Y+     G+  H I   ++ T K+V ++   + T +S     HP ++++AS
Sbjct: 318 STFSTTNGKYV---VGGSEDHGIYLWELQTRKIVQKLEGHSDTVVSV--SCHPTENMIAS 482

Query: 487 GS 488
           G+
Sbjct: 483 GA 488


>TC15640 similar to GB|AAP37794.1|30725544|BT008435 At3g63460 {Arabidopsis
           thaliana;}, partial (26%)
          Length = 1022

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 20/226 (8%)
 Frame = +2

Query: 191 IILSGDKKGQLGVWDFVRV----HEKVVYGNI--HSCLLNNMKFNPTNDCMVYSASSDGT 244
           ++  G   G + +W+ + +    +E  + G++  H   +  ++FN     ++ S + DG 
Sbjct: 389 LVAGGLVDGNIDIWNPLSLIRSENESALVGHLVRHKGPVRGLEFNTIAPNLLASGAEDGE 568

Query: 245 ISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFGFLHLVDMRSN 304
           I   DL           NP     P+ +  L G    S+  +  ++ N    H++   S 
Sbjct: 569 ICIWDLA----------NPSE---PTHFPPLKGSGSASQGEISFLSWNSKVQHILASTSY 709

Query: 305 NKTGNAILIHKKNTKVVGI------HCNPIE--PDIL--LTCGNDHYA----RVWDIRRM 350
           N T   +   KK   V+         C+ ++  PDI   L   +D       R+WD+R +
Sbjct: 710 NGT-TVVWDLKKQKPVISFADSVRRRCSVLQWNPDIATQLVVASDEDGSPSLRLWDMRNI 886

Query: 351 ETGSSIYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWDSIFGK 396
            T    + + H R V +  + P   + +LT   D+R   WD+I G+
Sbjct: 887 ITPIKEF-VGHTRGVIAMSWCPNDSSYLLTCGKDSRTICWDTISGE 1021



 Score = 37.4 bits (85), Expect = 0.007
 Identities = 42/180 (23%), Positives = 76/180 (41%), Gaps = 8/180 (4%)
 Frame = +2

Query: 175 HSRRITCLEFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVY------GNIHSCLLNNMKF 228
           H   +  LEF+    N++ SG + G++ +WD     E   +      G+     ++ + +
Sbjct: 491 HKGPVRGLEFNTIAPNLLASGAEDGEICIWDLANPSEPTHFPPLKGSGSASQGEISFLSW 670

Query: 229 NPTNDCMVYSASSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVL 288
           N     ++ S S +GT    DL+      +++      +  S   + +  DI ++  LV+
Sbjct: 671 NSKVQHILASTSYNGTTVVWDLKK--QKPVISFADSVRRRCSV--LQWNPDIATQ--LVV 832

Query: 289 VADNFG--FLHLVDMRSNNKTGNAILIHKKNTKVVGIHCNPIEPDILLTCGNDHYARVWD 346
            +D  G   L L DMR+        + H +   V+ +   P +   LLTCG D     WD
Sbjct: 833 ASDEDGSPSLRLWDMRNIITPIKEFVGHTRG--VIAMSWCPNDSSYLLTCGKDSRTICWD 1006


>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
          Length = 555

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 19/55 (34%), Positives = 25/55 (44%), Gaps = 13/55 (23%)
 Frame = +2

Query: 81  VCKVCKKPGH------------ESGFKGATYIDCPMKP-CFLCKTPGHTTLTCPH 122
           +CK CK+PGH              G  G    +C  K  C+ CK PGH   +CP+
Sbjct: 341 LCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASSCPN 505


>BP034655 
          Length = 517

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +1

Query: 18  DTDSEQSSSEEEEEALEDDEEEALEHEQEEEN 49
           D D E+   EEEEE  E++EEE  E E++EE+
Sbjct: 136 DDDEEEEEEEEEEEEEEEEEEEEEEEEEDEED 231



 Score = 34.7 bits (78), Expect = 0.042
 Identities = 15/32 (46%), Positives = 21/32 (64%)
 Frame = +1

Query: 18  DTDSEQSSSEEEEEALEDDEEEALEHEQEEEN 49
           D + E+   EEEEE  E++EEE  E E EE++
Sbjct: 139 DDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDD 234



 Score = 34.3 bits (77), Expect = 0.055
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 19  TDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAEIGKNE 58
           +D ++   EEEEE  E++EEE  E E+EE+    E  ++E
Sbjct: 133 SDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDE 252



 Score = 33.9 bits (76), Expect = 0.072
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 16  ERDTDSEQSSSEEEEEALEDDEEEALEHEQEEEN 49
           E + + E+   EEEEE  E++EEE  E ++E+E+
Sbjct: 148 EEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDED 249



 Score = 33.1 bits (74), Expect = 0.12
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 16  ERDTDSEQSSSEEEEEALEDDEEEALEHEQEEE 48
           E + + E+   EEEEE  E++EEE  E + EE+
Sbjct: 145 EEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEED 243



 Score = 32.7 bits (73), Expect = 0.16
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 16  ERDTDSEQSSSEEEEEALEDDEEEALEHEQEEEN 49
           + + + E+   EEEEE  E++EEE  + E +EE+
Sbjct: 142 DEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEED 243



 Score = 32.7 bits (73), Expect = 0.16
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 16  ERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVA 52
           E + + E+   EEEEE  E+DEE+  E E E+   VA
Sbjct: 160 EEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDYIPVA 270



 Score = 31.2 bits (69), Expect = 0.47
 Identities = 15/31 (48%), Positives = 18/31 (57%)
 Frame = +1

Query: 18  DTDSEQSSSEEEEEALEDDEEEALEHEQEEE 48
           D        EEEEE  E++EEE  E E+EEE
Sbjct: 121 DFGLSDDDEEEEEEEEEEEEEEEEEEEEEEE 213



 Score = 29.3 bits (64), Expect = 1.8
 Identities = 13/30 (43%), Positives = 21/30 (69%)
 Frame = +1

Query: 19  TDSEQSSSEEEEEALEDDEEEALEHEQEEE 48
           T ++   S+++EE  E++EEE  E E+EEE
Sbjct: 112 TAADFGLSDDDEEEEEEEEEEEEEEEEEEE 201


>BP085186 
          Length = 388

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = -1

Query: 9   PFPKVVIERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAEIGKNEKLEVGLDANR 68
           P+ ++V  +    + +  E  EE  E++EEE  E E+EEE    E  KNE+  V      
Sbjct: 322 PYARIVNGKLISPDNADGEGNEEEEEEEEEEEEEEEEEEEEAEPEEEKNEEENVNTQEG- 146

Query: 69  KGKTP 73
           +G+ P
Sbjct: 145 EGENP 131


>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
           (31%)
          Length = 727

 Score = 35.4 bits (80), Expect = 0.025
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +1

Query: 23  QSSSEEEEEALEDDEEEALEHEQEEENGVAEIGKNEKLEVGLDANRKGKTPI 74
           Q   E EEE  E+ EEE  E E+EEE    E  + E+ EV  +A  +   PI
Sbjct: 190 QEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEEEVEAEAEEEDDEPI 345



 Score = 35.4 bits (80), Expect = 0.025
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 15  IERDTDSEQSSSEEEEEALEDDEEEALEHEQEEE 48
           +E + + E    EEEEE  E+ EEE  E E+EEE
Sbjct: 205 VEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEEE 306



 Score = 35.0 bits (79), Expect = 0.032
 Identities = 15/35 (42%), Positives = 23/35 (64%)
 Frame = +1

Query: 15  IERDTDSEQSSSEEEEEALEDDEEEALEHEQEEEN 49
           +E + + E+   E EEE  E++EEE +E E EEE+
Sbjct: 229 VEEEEEEEEEEEEGEEEEEEEEEEEEVEAEAEEED 333



 Score = 34.7 bits (78), Expect = 0.042
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 15  IERDTDSEQSSSEEEEEALEDDEEEALEHEQEEE 48
           +E + + E+   EEEEE  E++EEE  E E E E
Sbjct: 217 VEEEVEEEEEEEEEEEEGEEEEEEEEEEEEVEAE 318



 Score = 32.3 bits (72), Expect = 0.21
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 16  ERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAEIGKNE 58
           E + + E+   EEEEE  E++E E  E E+EEE  V    + E
Sbjct: 202 EVEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEEEVEAEAEEE 330



 Score = 32.0 bits (71), Expect = 0.27
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 10  FPKVVIERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAEIGKNEKLE 61
           + +V  E + + E+   EEEEE  E +EEE  E E+EE    AE   +E ++
Sbjct: 196 YEEVEEEVEEEVEEEEEEEEEEE-EGEEEEEEEEEEEEVEAEAEEEDDEPIQ 348


>TC13152 similar to UP|Q84XX6 (Q84XX6) Leunig (Fragment), partial (60%)
          Length = 453

 Score = 35.0 bits (79), Expect = 0.032
 Identities = 22/84 (26%), Positives = 37/84 (43%)
 Frame = +2

Query: 170 AVIRYHSRRITCLEFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVYGNIHSCLLNNMKFN 229
           A +  HS  IT + F P+   +  S   K  + VWD       +     HS  + ++ F+
Sbjct: 68  ATLEEHSALITDVRFSPSMPRLATSSFDK-TVKVWDVDNPGYSLRTFTGHSASVMSLDFH 244

Query: 230 PTNDCMVYSASSDGTISFTDLETG 253
           P  + ++ S  SDG I +  +  G
Sbjct: 245 PNKEDLICSCDSDGEIRYWSINNG 316


>TC11210 similar to GB|AAP47478.1|32331901|AY164904 RTNLB7 {Oryza sativa
          (japonica cultivar-group);} , partial (7%)
          Length = 602

 Score = 33.9 bits (76), Expect = 0.072
 Identities = 24/61 (39%), Positives = 30/61 (48%), Gaps = 10/61 (16%)
 Frame = +2

Query: 28 EEEEALEDDEEEA----LEHEQEEENGVAE------IGKNEKLEVGLDANRKGKTPITLP 77
          EEE   ED+EEE      E E +EE+GV E       GK E L      + +GKT   +P
Sbjct: 5  EEESESEDEEEEVGGENCEEEGKEEHGVGEEKQSRNRGKTEDLSEEKQRSNRGKTEGRVP 184

Query: 78 L 78
          L
Sbjct: 185L 187


>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
          Length = 1008

 Score = 33.9 bits (76), Expect = 0.072
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -2

Query: 16  ERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAEIGKNEKLEVGLDANRKGKTPIT 75
           + D D +    +EE++  ED+EEE +E E  E+       ++E+ E  L   +K K   T
Sbjct: 401 QEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDE-----EEDEEDEEALQPPKKRKK*TT 237

Query: 76  L 76
           L
Sbjct: 236 L 234



 Score = 32.3 bits (72), Expect = 0.21
 Identities = 17/46 (36%), Positives = 25/46 (53%)
 Frame = -2

Query: 16  ERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAEIGKNEKLE 61
           E D D E    +++++  EDD+EE    E EEE GV E    ++ E
Sbjct: 425 EEDEDGEDQEDDDDDD--EDDDEEDDGGEDEEEEGVEEEDNEDEEE 294


>TC10816 homologue to UP|CAE45585 (CAE45585) Coatomer alpha subunit-like
           protein, partial (20%)
          Length = 979

 Score = 33.5 bits (75), Expect = 0.094
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
 Frame = +1

Query: 333 LLTCGNDHYARVWDIRRMETGSSIYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWD- 391
           +++  +D   R+W+ +     S +    HN  V  A F P   + +++ SLD  +RVWD 
Sbjct: 562 IVSASDDQTIRIWNWQSRTCISVLTG--HNHYVMCALFHPRE-DLVVSASLDQTVRVWDI 732

Query: 392 -SIFGKMDSPSREIVHSHDFNRYLTPFKAEWDPKDPSESLAVVGRYISENY----NGAAL 446
            S+  K  SP+ +I+     N             D    +  V +Y+ E +    N A+ 
Sbjct: 733 GSLKRKNASPADDILRLSQMN------------TDLFGGVDAVVKYVLEGHDRGVNWASF 876

Query: 447 HP 448
           HP
Sbjct: 877 HP 882


>TC9693 similar to UP|COPP_MOUSE (O55029) Coatomer beta' subunit
           (Beta'-coat protein) (Beta'-COP) (p102), partial (20%)
          Length = 743

 Score = 33.1 bits (74), Expect = 0.12
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +1

Query: 171 VIRYHSRRITCLEFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVYGNIHSCLLNNMKFNP 230
           V   H+  I C+  HPT   ++ S D    + +WD+ +          HS  +  + FNP
Sbjct: 487 VFEAHTDYIRCVAVHPTLPYVLSSSDDM-LIKLWDWEKGWICTQICEAHSHYVMQVTFNP 663

Query: 231 TNDCMVYSASSDGTISFTDL 250
            +     SAS D TI   +L
Sbjct: 664 KDTNTFASASLDRTIRIRNL 723



 Score = 28.9 bits (63), Expect = 2.3
 Identities = 17/69 (24%), Positives = 32/69 (45%), Gaps = 2/69 (2%)
 Frame = +1

Query: 323 IHCNPIEPDI--LLTCGNDHYARVWDIRRMETGSSIYDLKHNRVVSSAYFSPVSGNKILT 380
           I C  + P +  +L+  +D   ++WD  +    + I +  H+  V    F+P   N   +
Sbjct: 511 IRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQICEA-HSHYVMQVTFNPKDTNTFAS 687

Query: 381 TSLDNRLRV 389
            SLD  +R+
Sbjct: 688 ASLDRTIRI 714


>AV407983 
          Length = 417

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = -2

Query: 13  VVIERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAEIGKNEKLEVG 63
           VV+       +S+SE  +EA ED+ EE  E E+EEE G    G+    E G
Sbjct: 374 VVVVGGVGRARSASEGFDEADEDEVEEGAEDEREEEVGAERGGRRGGEEEG 222


>TC15924 weakly similar to GB|BAC21577.1|24060129|AP005438 G-protein beta
           family-like protein {Oryza sativa (japonica
           cultivar-group);}, partial (11%)
          Length = 1262

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = +1

Query: 332 ILLTCGNDHYARVWDIRRMETGSSIYDLKHNRVVSSAYFSPVSGNKILTTSLDNRLRVWD 391
           +L +  +D   +VWDIR   + S ++D+K ++   + +      + +L+ S D  ++VW 
Sbjct: 115 LLFSGYSDGSIKVWDIRG-HSASLVWDIKEHKKSVTCFSVHEPSDSLLSGSTDKTIKVWK 291

Query: 392 SIFGKMD 398
            I  K++
Sbjct: 292 MIQRKLE 312


>TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear
          phosphoprotein-like protein, partial (5%)
          Length = 789

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 16 ERDTDSEQSSSEEEEEALEDDEEEALEHEQEEENG 50
          E + DSE+SS ++E+E+ E      L  E E +NG
Sbjct: 56 EEEEDSEESSDDDEDESAEGGSRGTLVDEDENDNG 160


>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
          Length = 735

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 16  ERDTDSEQSSSEEEEE--ALEDDEEEALEHEQEEENGVAEI 54
           E D + E    EEEEE   +ED++    E E EEE GV  +
Sbjct: 423 EEDEEEENGEEEEEEEEVVVEDEQGNEDEDEDEEEEGVVVV 545



 Score = 29.3 bits (64), Expect = 1.8
 Identities = 26/101 (25%), Positives = 39/101 (37%), Gaps = 10/101 (9%)
 Frame = +3

Query: 15  IERDTDSEQSSSEEE----------EEALEDDEEEALEHEQEEENGVAEIGKNEKLEVGL 64
           +E + + E+   E+           E A E+DEEE    E+EEE  V    +    +   
Sbjct: 336 VEEEEEDEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEVVVEDEQGNEDEDE 515

Query: 65  DANRKGKTPITLPLRKVCKVCKKPGHESGFKGATYIDCPMK 105
           D   +G   + +  RKV       G  +  K A  I  P K
Sbjct: 516 DEEEEGVVVVEVKGRKVDSKGLHSGSGTPSKVAYVIPLPDK 638


>TC18764 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
           partial (35%)
          Length = 848

 Score = 32.3 bits (72), Expect = 0.21
 Identities = 14/26 (53%), Positives = 19/26 (72%)
 Frame = +1

Query: 25  SSEEEEEALEDDEEEALEHEQEEENG 50
           S +E+E   ED++EE LE E EEE+G
Sbjct: 169 SKDEDEGEGEDEDEEGLEEEDEEEHG 246



 Score = 29.3 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (58%)
 Frame = +1

Query: 8   VPFPKVVIERDTDSEQSSSEEEEEALEDDEEE 39
           V + K +I +D D  +   E+EE   E+DEEE
Sbjct: 145 VKYSKGLISKDEDEGEGEDEDEEGLEEEDEEE 240


>AV416122 
          Length = 414

 Score = 32.0 bits (71), Expect = 0.27
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 11  PKVVIERDTDSE---QSSSEEEEEALEDDEEEALEHEQEEE--NGVAEIGKNEK 59
           PK     D + +   Q   EEEE+  ED EEE  E + E++  NG AE+ +  K
Sbjct: 246 PKEAANDDNEPDNDVQFEGEEEEDDEEDKEEEDEEEDDEDDDSNGEAEVDRKGK 407


>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
          Length = 1183

 Score = 31.6 bits (70), Expect = 0.36
 Identities = 19/62 (30%), Positives = 31/62 (49%)
 Frame = -2

Query: 17  RDTDSEQSSSEEEEEALEDDEEEALEHEQEEENGVAEIGKNEKLEVGLDANRKGKTPITL 76
           ++   E+   +E +E  E +EEE  E E+E E    E+G  E+L +     +  +T I  
Sbjct: 729 KELGGEEQGRDEFDEDGEGEEEEEEEEEEEGEKVEVEVGVGEELLI-----KGSRTSINS 565

Query: 77  PL 78
           PL
Sbjct: 564 PL 559


>AV410716 
          Length = 424

 Score = 31.6 bits (70), Expect = 0.36
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 26  SEEEEEALEDDEEEALEHEQEEENG 50
           + EEEE +E++EEE  E E+ E+NG
Sbjct: 149 AREEEEEVEEEEEEEEEEEEAEKNG 223



 Score = 28.9 bits (63), Expect = 2.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 27  EEEEEALEDDEEEALEHEQEEENG 50
           EEEEE  E++EEE  E E E+  G
Sbjct: 155 EEEEEVEEEEEEEEEEEEAEKNGG 226


>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
           protein) (Fragment), partial (15%)
          Length = 543

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
 Frame = +3

Query: 11  PKVVIERDTDSEQSSSEEEEEALE------DDEEEALEHEQEEENGVAEIGKNEKLEVGL 64
           P   ++ D + E+   EEE++  E      DD+++  E E ++++   E G  E    G 
Sbjct: 225 PPKPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEVEGK 404

Query: 65  DANRKGKTPITLPLRKVC 82
           D  +      T     +C
Sbjct: 405 DGAKGAAAQTTKAAAAMC 458


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,801,844
Number of Sequences: 28460
Number of extensions: 171059
Number of successful extensions: 1116
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of query: 564
length of database: 4,897,600
effective HSP length: 95
effective length of query: 469
effective length of database: 2,193,900
effective search space: 1028939100
effective search space used: 1028939100
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)