BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0336.1
(1182 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP041457 177 2e-45
BI418295 173 1e-43
AV779281 130 9e-31
AV777202 114 1e-25
AV769206 110 1e-24
AV764934 107 1e-23
BP030371 105 3e-23
BP033820 98 7e-21
BP066094 86 2e-19
AU088980 89 4e-18
BP030995 86 3e-17
BP063694 81 9e-16
BP073434 77 1e-14
AV766088 76 4e-14
BP066067 75 6e-14
TC12255 62 4e-10
BP070393 62 7e-10
BP033602 60 2e-09
TC18909 40 1e-08
AV767042 49 5e-06
>BP041457
Length = 495
Score = 177 bits (450), Expect(2) = 2e-45
Identities = 83/133 (62%), Positives = 104/133 (77%)
Frame = +2
Query: 25 SLSTYTISEKLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPPRFVTERDRVAGTLNPAY 84
+L +Y I EKLS + FLLWKQQVEPIIKAH+LH + +P IPPR+ ++ + G +NPAY
Sbjct: 95 ALFSYLIFEKLSAKKFLLWKQQVEPIIKAHHLHCYIVEPAIPPRYSSDEEHANGVVNPAY 274
Query: 85 SVWESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRS 144
+WE+ DQ+LLSWLQS LS+ V + MIGC +SFQLW KIHSFFHNQTRAKSTQ+RTELRS
Sbjct: 275 PIWETHDQFLLSWLQSLLSSSVHTCMIGCVNSFQLWVKIHSFFHNQTRAKSTQIRTELRS 454
Query: 145 ETLGNRTISEFLL 157
LG R + ++L
Sbjct: 455 AKLGGRLLHGYIL 493
Score = 23.5 bits (49), Expect(2) = 2e-45
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 1 MEEVTPPPPPPP 12
M E PPPPP P
Sbjct: 55 MAEALPPPPPSP 90
>BI418295
Length = 523
Score = 173 bits (439), Expect = 1e-43
Identities = 82/170 (48%), Positives = 120/170 (70%)
Frame = +2
Query: 43 WKQQVEPIIKAHNLHVLVQDPEIPPRFVTERDRVAGTLNPAYSVWESKDQYLLSWLQSSL 102
W+QQVE I++H LH + DPEIP RF+TE DRVA T NPAY+ W +D + +WL ++L
Sbjct: 14 WRQQVEGAIQSHQLHDFLVDPEIPQRFLTEEDRVAATENPAYTTWIKQDSMVFTWLLTTL 193
Query: 103 STPVLSRMIGCAHSFQLWEKIHSFFHNQTRAKSTQLRTELRSETLGNRTISEFLLQIKSI 162
S VL +I C S Q+W +I FF NQ RA+S +LR+EL++ T G+++I+E+L +IK+I
Sbjct: 194 SPFVLPTVINCERSSQVWREILDFFENQCRAQSAKLRSELKNITKGSKSITEYLRRIKTI 373
Query: 163 IDSLFAIGDPISPREHLDVILQGLPSDYEDLITLISTRFEEHSIDELEAL 212
+++L +IG+P+S R+HL+ I GLP DY L T+I T +I E+EA+
Sbjct: 374 VNTLVSIGEPVSFRDHLEAIFDGLPEDYSALSTIIFTHASSSTISEVEAM 523
>AV779281
Length = 505
Score = 130 bits (328), Expect = 9e-31
Identities = 67/156 (42%), Positives = 99/156 (62%), Gaps = 2/156 (1%)
Frame = +1
Query: 12 PASPLPPHRFKLPSLSTYTISEK--LSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPPRF 69
P P+P + PSLS+ + L D NFL WKQ VE I++ H + P++PPRF
Sbjct: 37 PEIPIPMVQ---PSLSSSALVHNAYLEDTNFLSWKQHVEGIVRTHRWQSFLDHPDVPPRF 207
Query: 70 VTERDRVAGTLNPAYSVWESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFHN 129
+++ DRV NPAY +WE +D L +WL SSLS VL ++ C+ S+Q+ E + FF
Sbjct: 208 LSDEDRVNAVENPAYQLWEQQDSALFTWLLSSLSPTVLPTVVNCSQSWQVREAVLDFFKA 387
Query: 130 QTRAKSTQLRTELRSETLGNRTISEFLLQIKSIIDS 165
+ A+STQLR+ELRS G++T S++L +IKSI+++
Sbjct: 388 HSFAQSTQLRSELRSIAKGSKTCSDYLKRIKSIVNA 495
>AV777202
Length = 421
Score = 114 bits (284), Expect = 1e-25
Identities = 58/128 (45%), Positives = 79/128 (61%), Gaps = 1/128 (0%)
Frame = +3
Query: 10 PPPASPLPPHRFKLPSLS-TYTISEKLSDRNFLLWKQQVEPIIKAHNLHVLVQDPEIPPR 68
P P + L P +L S S + + KL D NFL WKQ VE I++ H L + P+IPPR
Sbjct: 45 PVPVAVLQP---QLASSSLVHKLVLKLDDSNFLSWKQHVEGIVRTHRLQNFLVHPDIPPR 215
Query: 69 FVTERDRVAGTLNPAYSVWESKDQYLLSWLQSSLSTPVLSRMIGCAHSFQLWEKIHSFFH 128
F++E DRV NPAY VW+ +D L +WL SSLS+ VL ++ C S+Q+WE + FF
Sbjct: 216 FLSEEDRVNAVENPAYQVWDQQDSALFTWLLSSLSSSVLPTVVNCTQSWQIWEAVLDFFQ 395
Query: 129 NQTRAKST 136
Q+ A+ST
Sbjct: 396 AQSLAQST 419
>AV769206
Length = 536
Score = 110 bits (276), Expect = 1e-24
Identities = 55/100 (55%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Frame = -3
Query: 819 MRPYNSHKLDFRSQECVFLGYSPSHRGYKCLASSGRIYISKDVIFDEHTFPYPKLFAQNS 878
+RPYNS KL S+ECVF+GYS +H+GYKCL SGRIYISKDV+F EH FPYP LF +
Sbjct: 531 LRPYNSTKLSLHSKECVFIGYSINHKGYKCLDQSGRIYISKDVLFHEHRFPYPSLFPDET 352
Query: 879 NSPSLSPAVVLPSLPSVEHFSQPAIAQPS-SSLPSPFLPS 917
S + + L ++P V H + PA+A SSL S LPS
Sbjct: 351 TSSTSAEFFPLSTIPIVSHTTPPALASSGFSSLGSATLPS 232
>AV764934
Length = 406
Score = 107 bits (267), Expect = 1e-23
Identities = 59/137 (43%), Positives = 77/137 (56%)
Frame = -2
Query: 519 QASSKVLLQGSVGADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVV 578
+ +S+ L+ G VG DGLY F +L L +T SS PS V
Sbjct: 378 EVTSEPLIHGVVGPDGLYSFPLPQLQQLG-------------YTRSMSSSPVSGRHPSSV 238
Query: 579 SSVCTANLWHFRLGHPSLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTE 638
S+ T + WH RLGHP L+ L++ L C + S K V+F AC +GK+HRLPS +STT
Sbjct: 237 SAFVTLSTWHSRLGHPHLDNLKRVLSSCNVSYSPKDTVEFRTACCLGKAHRLPSQMSTTT 58
Query: 639 YTSPLELVYSDLWGPSP 655
Y P EL+YSDLWGP+P
Sbjct: 57 YL-PFELIYSDLWGPAP 10
>BP030371
Length = 516
Score = 105 bits (263), Expect = 3e-23
Identities = 67/174 (38%), Positives = 98/174 (55%), Gaps = 3/174 (1%)
Frame = -2
Query: 150 RTISEFLLQIKSIIDSLFAIGDPISPREHLDVILQGLPSDYEDLITLI--STRFEEHSID 207
RT++E+L+ IKSI D +IGDP+S +E ++IL+G P+ YE L+ LI S +F+ S+D
Sbjct: 515 RTVAEYLM*IKSITDPPRSIGDPVSAKEQAEIILEGFPTKYESLVNLIHMSDKFQALSLD 336
Query: 208 ELEALLLAKEARLGKYRTPSATGEISVNVALSNPQTPSSSAVSTQSASHTTSQGESQDSD 267
E+E+LL +EAR+ YR EI VN+ + SSSA + A
Sbjct: 335 EIESLLRDQEARIECYR--KFLTEI*VNLT*TLENQGSSSANTYAPA------------- 201
Query: 268 PMDSYDSSGHGRGSSRGRGARGRGRGRS-SIQCQLCYKFGHDVWQCYHRFNPNF 320
P+ S ++S G + G+ G+G GR +QCQ+C GH CYHRF+ F
Sbjct: 200 PVHSAEASHDGYSNFNGKRCGGKG*GRGYGVQCQVCLPTGHTASVCYHRFDKTF 39
>BP033820
Length = 537
Score = 98.2 bits (243), Expect = 7e-21
Identities = 67/154 (43%), Positives = 85/154 (54%), Gaps = 30/154 (19%)
Frame = -2
Query: 478 LVLNNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSVGADGLYK 537
L+LN LL VPSITKNLVSVS+FA+DN V+F FH +C V+ Q +S++LL GSVG DGLY
Sbjct: 500 LILNKLLLVPSITKNLVSVSRFAKDNNVYFTFHANFCAVRHQDTSELLLTGSVGDDGLYY 321
Query: 538 FH---EFKLSHLPVS------------------LSAPVQHPVS---------VHTSVSSS 567
F +SH PV S PV + S V++SVSSS
Sbjct: 320 FDGPPSQAVSHSPVKASLFQSSLHSQPLAQAGLASQPVGNKASSAIDLPSSLVNSSVSSS 141
Query: 568 GHAPVEQPSVVSSVCTANLWHFRLGHPSLNVLRK 601
AP S +S LWH R+GHP +VL++
Sbjct: 140 --APCNSSSNIS---IYELWHNRMGHPHHDVLKQ 54
>BP066094
Length = 532
Score = 85.9 bits (211), Expect(2) = 2e-19
Identities = 43/105 (40%), Positives = 71/105 (66%), Gaps = 2/105 (1%)
Frame = +2
Query: 1079 KPVTIRVILTLALTNHWTIQQLDVNNAFLNGDLAEEVYMQQPQGFEHDKKL--VCRLHKA 1136
K IR++++ ++ ++ + Q++V +AFLNG ++EEVY+ QP G E +K + +L K+
Sbjct: 89 KTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKKS 268
Query: 1137 LYGLKQAPRAWFEKLTSALVQFGFVASKCDPSLFVLSKKPLVIYV 1181
LYGLKQAPRAW+E+L+S L++ V K D +LF + K ++ V
Sbjct: 269 LYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIV 403
Score = 28.1 bits (61), Expect(2) = 2e-19
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 1062 FHQQPGFDYTETFSPVIK 1079
+ QQ G DYTETF+PV +
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>AU088980
Length = 360
Score = 89.0 bits (219), Expect = 4e-18
Identities = 44/105 (41%), Positives = 60/105 (56%)
Frame = +2
Query: 742 NGVVERKHRHIVDLGLSLLAHASIPLTYWDFAFSTAVYLINRLPTSSLQFDIPLYKLFKQ 801
N +VERKHRHI+++ +L+ H+ +P W FA A YLIN LP+ L+ P L
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 802 IPDYTFLKVFGCTCFPLMRPYNSHKLDFRSQECVFLGYSPSHRGY 846
P LKVFG C+ +N KLD R+++CVFLG+ GY
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGY 316
>BP030995
Length = 458
Score = 85.9 bits (211), Expect = 3e-17
Identities = 60/148 (40%), Positives = 78/148 (52%), Gaps = 14/148 (9%)
Frame = -3
Query: 471 SSTLSSGLVLNNLLHVPSITKNLVSVSKFARDNGVFFEFHPYYCCVKSQASSKVLLQGSV 530
SS+ S LVLNNLLHVP + KNL SVS F + N VFFEFH C VKSQ + + LLQG++
Sbjct: 447 SSSTSFPLVLNNLLHVPGVCKNLSSVSXFCKQNNVFFEFHSDSCLVKSQETEETLLQGTL 268
Query: 531 GADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTS--------VSSSGHAPVEQPSVVSS-V 581
+GL F + H V++H++ +SSS A SV SS
Sbjct: 267 -RNGLCAFDN-------------LLHKVNLHSASTLSNSALLSSSSPASALSVSVFSSNK 130
Query: 582 CT-----ANLWHFRLGHPSLNVLRKALQ 604
C + LWH RLGH S ++ L+
Sbjct: 129 CAQADIDSRLWHSRLGHASQKIVSHVLK 46
>BP063694
Length = 511
Score = 81.3 bits (199), Expect = 9e-16
Identities = 41/115 (35%), Positives = 66/115 (56%), Gaps = 1/115 (0%)
Frame = -2
Query: 586 LWHFRLGHPSLNVLRKALQFCKIPVSNKMDVDFC-KACVMGKSHRLPSSLSTTEYTSPLE 644
LWH RLGH + +++++ + + VS+ + C +C M KS RL + ++ L+
Sbjct: 360 LWHSRLGHVNFDIIKQLHKHGCLDVSSILPKPICCTSCQMAKSKRLVFHDNNKRASAVLD 181
Query: 645 LVYSDLWGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSEAISAFHQFKASSE 699
L++ DL GPSP S G+ Y++ F+D +SR+TW Y LK KS+ +FK E
Sbjct: 180 LIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFME 16
>BP073434
Length = 490
Score = 77.4 bits (189), Expect = 1e-14
Identities = 49/117 (41%), Positives = 61/117 (51%)
Frame = -1
Query: 524 VLLQGSVGADGLYKFHEFKLSHLPVSLSAPVQHPVSVHTSVSSSGHAPVEQPSVVSSVCT 583
VLL G VGADGLY F L SLS SV S + ++
Sbjct: 313 VLLLGHVGADGLYSF-----PGLLASLS-----------SVDRSPSFDIVNTITTTTTNK 182
Query: 584 ANLWHFRLGHPSLNVLRKALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYT 640
+WH RLGHP + L+ LQ C I +S++ DFC AC +GKSH LPSSLST+ Y+
Sbjct: 181 FLIWHSRLGHPHQDALQAVLQSCNIHLSSRDMTDFCYACCLGKSHILPSSLSTSVYS 11
Score = 67.4 bits (163), Expect = 1e-11
Identities = 34/61 (55%), Positives = 38/61 (61%)
Frame = -2
Query: 415 TSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIGSSTL 474
T TP A A SWYPDSGASHHVT N+ PF G D +FVGNGQGL ++ G S
Sbjct: 489 THTPAAGLVA-SWYPDSGASHHVTPHGNNIQYPDPFEGPDHIFVGNGQGLSVASSGFSPQ 313
Query: 475 S 475
S
Sbjct: 312 S 310
>AV766088
Length = 501
Score = 75.9 bits (185), Expect = 4e-14
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Frame = -3
Query: 585 NLWHFRLGHPSLNVLR--KALQFCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSP 642
+LWH RLGHPS + LR ++ +F + N V C++CV GK RLP S P
Sbjct: 310 SLWHSRLGHPSSSALRYLRSNKFISYELLNYSPV--CESCVFGKHVRLPFVSSNNVTVMP 137
Query: 643 LELVYSDLWGPSPSPSSSGYLYYITFIDAYSRYTWIYLLKAKSE 686
++++SDLW SP SS+G+ +Y+ F+D ++ + W + L KS+
Sbjct: 136 FDILHSDLW-TSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQ 8
>BP066067
Length = 505
Score = 75.1 bits (183), Expect = 6e-14
Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 14/109 (12%)
Frame = -2
Query: 400 SPMGYAQAHVAFQTSTSTPQA------TSP--AQSWYPDSGASHHVTSESQNVHQFTPFA 451
SP +Q H+ S+ P A +P SW DSGASHHVT++ Q++ +
Sbjct: 402 SPQKLSQQHLQLPQSSPAPMAFVSNTVAAP*TTHSW*ADSGASHHVTNDPQHLMESITMP 223
Query: 452 GQDQLFVGNGQGLPISGIGSSTLSSGLV------LNNLLHVPSITKNLV 494
GQ+Q++V +GQGLPI IG ++ SS L+ L + H+P+ITKN+V
Sbjct: 222 GQEQVYVCSGQGLPILSIGFTSFSSPLISNTKFSLKDFFHLPTITKNIV 76
>TC12255
Length = 558
Score = 62.4 bits (150), Expect = 4e-10
Identities = 30/57 (52%), Positives = 36/57 (62%)
Frame = +3
Query: 414 STSTPQATSPAQSWYPDSGASHHVTSESQNVHQFTPFAGQDQLFVGNGQGLPISGIG 470
++ST +P +W PDSGA+HHVT+ P A QDQL VGNGQGLPI IG
Sbjct: 12 ASSTQFTAAPQVNWCPDSGATHHVTNNPGIFVDNVPLATQDQLLVGNGQGLPIQSIG 182
Score = 57.4 bits (137), Expect = 1e-08
Identities = 48/130 (36%), Positives = 61/130 (46%), Gaps = 31/130 (23%)
Frame = +1
Query: 521 SSKVLLQGSVGADGLYKFH---EFKLSHLPVSLSA------------------PVQHPVS 559
+S++LL GSVG DGLY F +SH PV S PV + S
Sbjct: 184 TSELLLTGSVGDDGLYYFDGPPSQAVSHSPVKASLFQSSLHSQPLAQAGLASQPVGNKAS 363
Query: 560 ---------VHTSVSSSGHAPVEQPSVVSSVCTANLWHFRLGHPSLNVLRKALQFCKIPV 610
V++SVSSS AP S +S LWH R+GHP +VL++ L C +PV
Sbjct: 364 SAIDLPSSLVNSSVSSS--APCNSSSNISIY---ELWHNRMGHPHHDVLKQTLSLCNVPV 528
Query: 611 -SNKMDVDFC 619
SNK FC
Sbjct: 529 SSNKSVFSFC 558
>BP070393
Length = 359
Score = 61.6 bits (148), Expect = 7e-10
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Frame = -3
Query: 518 SQASSKVLLQGSVGADGLYKFHEFKLSHLPVSLSAP---VQHPVSVHTSVSSSGHAPVEQ 574
++ +SKVLL+GSVG+DGLY F + + + S S P + T +G + +
Sbjct: 294 AKETSKVLLRGSVGSDGLYTFDDVNAASVSSSCSKSDLSTSTPSVLSTVYPGTGKS--QN 121
Query: 575 PSVVSSVCTAN--LWHFRLGHPSLNVLRKALQFCKIPVSN 612
S VSS+ ++ LWH RLGHP VL+ LQ C +P+ N
Sbjct: 120 MSSVSSLGNSSYDLWHCRLGHPHHEVLKTTLQLCNVPLPN 1
>BP033602
Length = 533
Score = 60.1 bits (144), Expect = 2e-09
Identities = 31/90 (34%), Positives = 48/90 (52%), Gaps = 2/90 (2%)
Frame = +3
Query: 586 LWHFRLGHPSLNVLRKALQ--FCKIPVSNKMDVDFCKACVMGKSHRLPSSLSTTEYTSPL 643
LWH RLGHP+ LR F + S+ C++CV+ K+ R P + P
Sbjct: 276 LWHNRLGHPNFQYLRHLFPDLFKNVNCSSLE----CESCVLAKNQRAPYYSQPYHASRPF 443
Query: 644 ELVYSDLWGPSPSPSSSGYLYYITFIDAYS 673
L++SD+WGPS + G +++TFID ++
Sbjct: 444 YLIHSDVWGPSKITTQFGKRWFVTFIDDHT 533
>TC18909
Length = 621
Score = 40.4 bits (93), Expect(2) = 1e-08
Identities = 16/23 (69%), Positives = 22/23 (95%)
Frame = +2
Query: 1069 DYTETFSPVIKPVTIRVILTLAL 1091
DYTET SPV+KPVT+R++L+LA+
Sbjct: 62 DYTETVSPVVKPVTVRILLSLAV 130
Score = 36.6 bits (83), Expect(2) = 1e-08
Identities = 15/17 (88%), Positives = 17/17 (99%)
Frame = +1
Query: 1048 GTLNKYKARLVAKGFHQ 1064
G++NKYKARLVAKGFHQ
Sbjct: 1 GSINKYKARLVAKGFHQ 51
>AV767042
Length = 444
Score = 48.9 bits (115), Expect = 5e-06
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = -3
Query: 1064 QQPGFDYTETFSPVIKPVTIRVILTLALTNHWTIQQLDVNNAFL 1107
Q G D +TFSPV+KP IR + T+AL+ W I QL+V N ++
Sbjct: 349 QTAGVDCNKTFSPVVKPAPIRTVFTIALSRSWPIPQLNVQNLWI 218
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,853,080
Number of Sequences: 28460
Number of extensions: 500082
Number of successful extensions: 10819
Number of sequences better than 10.0: 597
Number of HSP's better than 10.0 without gapping: 5777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9037
length of query: 1182
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1082
effective length of database: 2,051,600
effective search space: 2219831200
effective search space used: 2219831200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0336.1