BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0309.4
(116 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV771869 29 0.23
TC10836 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-ac... 26 1.5
TC14918 similar to UP|Q8VAJ1 (Q8VAJ1) Wsv418 (WSSV477), partial ... 26 1.9
TC18521 similar to UP|Q9M205 (Q9M205) Regulatory protein-like, p... 26 1.9
TC8686 similar to UP|O23724 (O23724) GAI protein, partial (22%) 25 2.5
BP057504 25 2.5
TC11856 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {Ar... 25 3.3
BP084445 25 4.3
AV410481 25 4.3
AV768606 24 5.7
TC13169 similar to UP|Q8H6R3 (Q8H6R3) Nodulin-like protein, part... 24 5.7
TC10127 weakly similar to GB|BAC16475.1|23237901|AP004671 10 kDa... 23 9.6
TC10311 similar to UP|Q9FIJ6 (Q9FIJ6) Receptor kinase-like prote... 23 9.6
AV426815 23 9.6
AV422451 23 9.6
>AV771869
Length = 429
Score = 28.9 bits (63), Expect = 0.23
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -1
Query: 85 EATFYTRQMRSADEGQTTFYAC--TRCGHQFQEN 116
+A + Q+RSADE T FY C +C H ++E+
Sbjct: 297 KAAYPEMQIRSADEPATIFYWCLNEKCRHPWRED 196
>TC10836 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-acetyl
glucosamine transferase {Arabidopsis thaliana;} ,
partial (16%)
Length = 833
Score = 26.2 bits (56), Expect = 1.5
Identities = 19/56 (33%), Positives = 26/56 (45%)
Frame = +3
Query: 4 SRERDFLFCHYCGTMLTVPSVNYAECPLCKNRSNIKDIEGKEISYTISAEEIRREL 59
SR LFC C M+ V + CPL +N++ I + T+S EIR L
Sbjct: 306 SRNPRSLFCP-CAAMIPVKLMKICICPLHIKCTNLEVIRKR*NIATLSMTEIRSVL 470
>TC14918 similar to UP|Q8VAJ1 (Q8VAJ1) Wsv418 (WSSV477), partial (11%)
Length = 629
Score = 25.8 bits (55), Expect = 1.9
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = +1
Query: 61 IETIEEQKVQLSKVNKTCEKCGNGEATFYTRQ 92
++ IEE + + V EK GN + YTRQ
Sbjct: 40 VDNIEEGSDKFTTVANPSEKKGNNKVVCYTRQ 135
>TC18521 similar to UP|Q9M205 (Q9M205) Regulatory protein-like, partial
(19%)
Length = 574
Score = 25.8 bits (55), Expect = 1.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 66 EQKVQLSKVNKTCEKCGNGEATFYTRQMRSADEGQTTFYACTRCG 110
++K +LS + KC G+ F T Q + G F +RCG
Sbjct: 250 DRKCRLSVHDPCQSKCLLGD*DFRTSQSTATGRGMYKFQPLSRCG 384
>TC8686 similar to UP|O23724 (O23724) GAI protein, partial (22%)
Length = 786
Score = 25.4 bits (54), Expect = 2.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 14 YCGTMLTVPSVNYAECPLC 32
Y T L PS + A CP+C
Sbjct: 683 YVATFLIAPSCDAARCPIC 627
>BP057504
Length = 539
Score = 25.4 bits (54), Expect = 2.5
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 17 TMLTVPSVNYAECPLCKNRS 36
T T SVNY C LCKN S
Sbjct: 430 TSFTWFSVNYLGCLLCKNNS 371
>TC11856 similar to GB|AAO63369.1|28950891|BT005305 At4g11960 {Arabidopsis
thaliana;}, partial (34%)
Length = 613
Score = 25.0 bits (53), Expect = 3.3
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +3
Query: 78 CEKCGNGEATFYTRQMRSADEGQTTFYACTRCG 110
C CG +F+ + A G + C+ CG
Sbjct: 180 CPNCGTENTSFFGTILSIASGGSSNKVKCSNCG 278
>BP084445
Length = 411
Score = 24.6 bits (52), Expect = 4.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 48 YTISAEEIRRELGIETIEEQKVQLSKVNKTCE 79
Y +S +E+R++LG+ Q +QLS + T E
Sbjct: 227 YILSHQELRQDLGVLAHPLQVLQLSHPHPTWE 322
>AV410481
Length = 428
Score = 24.6 bits (52), Expect = 4.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 48 YTISAEEIRRELGIETIEEQKVQLSKVNKTCE 79
Y +S +E+R++LG+ Q +QLS + T E
Sbjct: 275 YILSHQELRQDLGVLAHPLQVLQLSHPHPTWE 180
>AV768606
Length = 566
Score = 24.3 bits (51), Expect = 5.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 8 DFLFCHYCGTMLTVPSVNYAECPLCKN 34
+F F H C + T PS C LC +
Sbjct: 282 EFPFFHLCKILHTFPSFACLHCNLCNS 202
>TC13169 similar to UP|Q8H6R3 (Q8H6R3) Nodulin-like protein, partial (6%)
Length = 534
Score = 24.3 bits (51), Expect = 5.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 12 CHYCGTMLTVPSVN 25
CHYCG + T S+N
Sbjct: 177 CHYCGIIYTWVSIN 218
>TC10127 weakly similar to GB|BAC16475.1|23237901|AP004671 10 kDa chaperonin
{Oryza sativa (japonica cultivar-group);} , complete
Length = 618
Score = 23.5 bits (49), Expect = 9.6
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 22 PSVNYAECPLC 32
P++N+AECP C
Sbjct: 371 PNLNHAECPKC 339
>TC10311 similar to UP|Q9FIJ6 (Q9FIJ6) Receptor kinase-like protein, partial
(5%)
Length = 588
Score = 23.5 bits (49), Expect = 9.6
Identities = 15/57 (26%), Positives = 22/57 (38%)
Frame = +1
Query: 59 LGIETIEEQKVQLSKVNKTCEKCGNGEATFYTRQMRSADEGQTTFYACTRCGHQFQE 115
L +ET + +Q + TC +CG R F CGH+FQ+
Sbjct: 157 LRVETYKASLIQR*ETTMTCNQCG-----------R*RRRH*CAFNLTDTCGHRFQK 294
>AV426815
Length = 391
Score = 23.5 bits (49), Expect = 9.6
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +3
Query: 64 IEEQKVQLSKVNKTCEKCGNGEATFYTRQMRSADEGQTTFYACT 107
+ + V++ K G+G T R+ +G TTF++ T
Sbjct: 234 VYRENVEVPKKKTNIMFLGDGRTTTIITGSRNVVDGSTTFHSAT 365
>AV422451
Length = 255
Score = 23.5 bits (49), Expect = 9.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 54 EIRRELGIETIEEQKVQLSKVNKTCEKCGNGEA 86
E R G EE+++ VN+T EKC GEA
Sbjct: 166 EYFRGXGGSNGEEREIVRKMVNRTLEKC-TGEA 71
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,157,185
Number of Sequences: 28460
Number of extensions: 22463
Number of successful extensions: 128
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of query: 116
length of database: 4,897,600
effective HSP length: 78
effective length of query: 38
effective length of database: 2,677,720
effective search space: 101753360
effective search space used: 101753360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)
Lotus: description of TM0309.4