TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0282.7
         (463 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB826886                                                              393  e-110
TC17990 similar to GB|AAM65958.1|21594040|AY088421 homogentisate...   299  6e-82
TC18207 similar to UP|Q9M6U1 (Q9M6U1) Homogentisate 1,2-dioxygen...   291  1e-79
BI420850                                                               30  0.84
BP060042                                                               29  1.9
CN825108                                                               28  2.5
BP038692                                                               28  2.5
TC14097 homologue to UP|GCSP_PEA (P26969) Glycine dehydrogenase ...    28  3.2
AV410488                                                               27  5.5
AV408798                                                               27  7.1
TC15320 weakly similar to GB|AAN28760.1|23505801|AY143821 At3g51...    27  9.3

>CB826886 
          Length = 631

 Score =  393 bits (1009), Expect = e-110
 Identities = 186/187 (99%), Positives = 186/187 (99%)
 Frame = +3

Query: 1   MEHSTAGDDFNYLSGFGNHFSSEALAGALPEAQNSPLICPYGLYAEQISGTSFTSPRNLN 60
           MEHSTAGDDFNYLSGFGNHFSSEALAGALPEAQNSPLICPYGLYAEQISGTSFTSP NLN
Sbjct: 69  MEHSTAGDDFNYLSGFGNHFSSEALAGALPEAQNSPLICPYGLYAEQISGTSFTSPWNLN 248

Query: 61  LFSWFYRVKPSVTHEPFKPRVPCNGRILSEFNHSNSSTNPTQLRWKPMDSPDSPTDFIDG 120
           LFSWFYRVKPSVTHEPFKPRVPCNGRILSEFNHSNSSTNPTQLRWKPMDSPDSPTDFIDG
Sbjct: 249 LFSWFYRVKPSVTHEPFKPRVPCNGRILSEFNHSNSSTNPTQLRWKPMDSPDSPTDFIDG 428

Query: 121 LSTVCGSGSSFMRHGYAIHMYTANKSMNNCAFCNADGDFLIVPQQGRLFITTECGRLKVS 180
           LSTVCGSGSSFMRHGYAIHMYTANKSMNNCAFCNADGDFLIVPQQGRLFITTECGRLKVS
Sbjct: 429 LSTVCGSGSSFMRHGYAIHMYTANKSMNNCAFCNADGDFLIVPQQGRLFITTECGRLKVS 608

Query: 181 PGEIAML 187
           PGEIAML
Sbjct: 609 PGEIAML 629


>TC17990 similar to GB|AAM65958.1|21594040|AY088421 homogentisate
           1,2-dioxygenase {Arabidopsis thaliana;} , partial (28%)
          Length = 561

 Score =  299 bits (766), Expect = 6e-82
 Identities = 140/140 (100%), Positives = 140/140 (100%)
 Frame = +2

Query: 1   MEHSTAGDDFNYLSGFGNHFSSEALAGALPEAQNSPLICPYGLYAEQISGTSFTSPRNLN 60
           MEHSTAGDDFNYLSGFGNHFSSEALAGALPEAQNSPLICPYGLYAEQISGTSFTSPRNLN
Sbjct: 83  MEHSTAGDDFNYLSGFGNHFSSEALAGALPEAQNSPLICPYGLYAEQISGTSFTSPRNLN 262

Query: 61  LFSWFYRVKPSVTHEPFKPRVPCNGRILSEFNHSNSSTNPTQLRWKPMDSPDSPTDFIDG 120
           LFSWFYRVKPSVTHEPFKPRVPCNGRILSEFNHSNSSTNPTQLRWKPMDSPDSPTDFIDG
Sbjct: 263 LFSWFYRVKPSVTHEPFKPRVPCNGRILSEFNHSNSSTNPTQLRWKPMDSPDSPTDFIDG 442

Query: 121 LSTVCGSGSSFMRHGYAIHM 140
           LSTVCGSGSSFMRHGYAIHM
Sbjct: 443 LSTVCGSGSSFMRHGYAIHM 502


>TC18207 similar to UP|Q9M6U1 (Q9M6U1) Homogentisate 1,2-dioxygenase
           (Fragment) , partial (23%)
          Length = 583

 Score =  291 bits (746), Expect = 1e-79
 Identities = 135/135 (100%), Positives = 135/135 (100%)
 Frame = +3

Query: 329 VAEHTFRPPYYHRNCMSEFMGLIHGGYEAKVDGFLPGGASLHSCMTPHGPDTKSYEATIA 388
           VAEHTFRPPYYHRNCMSEFMGLIHGGYEAKVDGFLPGGASLHSCMTPHGPDTKSYEATIA
Sbjct: 3   VAEHTFRPPYYHRNCMSEFMGLIHGGYEAKVDGFLPGGASLHSCMTPHGPDTKSYEATIA 182

Query: 389 RGNDVGPNKITDTMAFMFESCLIPRISRWALESPFLDHDYYQCWIGLRSHFNVTEISPRT 448
           RGNDVGPNKITDTMAFMFESCLIPRISRWALESPFLDHDYYQCWIGLRSHFNVTEISPRT
Sbjct: 183 RGNDVGPNKITDTMAFMFESCLIPRISRWALESPFLDHDYYQCWIGLRSHFNVTEISPRT 362

Query: 449 PTLDSETVAGDTKSS 463
           PTLDSETVAGDTKSS
Sbjct: 363 PTLDSETVAGDTKSS 407


>BI420850 
          Length = 419

 Score = 30.0 bits (66), Expect = 0.84
 Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 5/57 (8%)
 Frame = +3

Query: 402 MAFMFESCLIPRISRWALESPFLDHDYYQ-----CWIGLRSHFNVTEISPRTPTLDS 453
           + F F++ +  R   W++ +  +    YQ     CWI  RSHF+V  +  R   L S
Sbjct: 219 LGFKFKA*ICSRT*IWSINANSIRLHEYQGTSTRCWIQQRSHFHVRGVEARHQALSS 389


>BP060042 
          Length = 353

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 16/38 (42%), Positives = 19/38 (49%)
 Frame = +2

Query: 337 PYYHRNCMSEFMGLIHGGYEAKVDGFLPGGASLHSCMT 374
           P   R   SEF+GL  GG +AK  GFL    +   C T
Sbjct: 149 PMNVRCIRSEFLGLNGGGSKAKQRGFLSCDVNTRKCWT 262


>CN825108 
          Length = 655

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 267 PFNVVAWRGNYVPYKYDLSKFCPYN-TVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPP 325
           P NVVA    YVP +   ++  P + T L  H   SI T+L+    +  + LL ++   P
Sbjct: 195 PVNVVAKLKPYVPIRALFTRIIPTDVTTLNIHDATSIATLLSPLVSEDMLNLLPYL---P 25

Query: 326 RWL 328
           +WL
Sbjct: 24  KWL 16


>BP038692 
          Length = 405

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 308 APTDKPGVALL---DFVIFPPRWLVAEHTFRPP 337
           +P+D P   LL   D+ +F P WL+  H  +PP
Sbjct: 280 SPSDFPSDPLLQMGDYQMFEPSWLMKYHRVQPP 378


>TC14097 homologue to UP|GCSP_PEA (P26969) Glycine dehydrogenase
            [decarboxylating], mitochondrial precursor  (Glycine
            decarboxylase) (Glycine cleavage system P-protein) ,
            partial (97%)
          Length = 3660

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 92   NHSNSSTNPTQLRWKPMDSPDSPTDFIDGLSTVCGSGSSFMRHGYAIHMYTANK 145
            NH+  S  P+QL    + S   P D +        S + F +H    HM   NK
Sbjct: 3117 NHTPGSAQPSQLHGSGLPSSGLPQDVLTTCMVTATSSAPFSQH----HMLLKNK 3266


>AV410488 
          Length = 428

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 7/12 (58%), Positives = 12/12 (99%)
 Frame = +1

Query: 332 HTFRPPYYHRNC 343
           H+FRPP++H++C
Sbjct: 259 HSFRPPHFHKHC 294


>AV408798 
          Length = 324

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 71  SVTHEPFKPRVPCNGRILSEFNHSNSSTNPTQLRWKPMDSPDSPT 115
           +  + PF P    + RI +  N  + S NP  L   P + P SPT
Sbjct: 66  TTNNNPFNPFSKVSPRIPTPTNGFDFSRNPFSLSGLPKNHPISPT 200


>TC15320 weakly similar to GB|AAN28760.1|23505801|AY143821
           At3g51730/T18N14_110 {Arabidopsis thaliana;}, partial
           (52%)
          Length = 1195

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 4   STAGDDFNYLSGFGNHFSSEALAGALPEAQNSPLICPYGLYAEQI 48
           S    DF + SGF +  +S+A A       NSP++ P+ +++ +I
Sbjct: 184 SAQTSDFLFNSGFASSLASQAQAAPSTIRNNSPIL-PFMVHSHEI 53


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,443,689
Number of Sequences: 28460
Number of extensions: 151226
Number of successful extensions: 634
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of query: 463
length of database: 4,897,600
effective HSP length: 93
effective length of query: 370
effective length of database: 2,250,820
effective search space: 832803400
effective search space used: 832803400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)