BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0233.21
(309 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 43 8e-05
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 42 2e-04
TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein... 41 2e-04
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 38 0.002
BP052725 29 0.002
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 38 0.002
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 37 0.003
TC9283 36 0.007
AV425102 36 0.009
TC7926 homologue to UP|PGKH_TOBAC (Q42961) Phosphoglycerate kina... 35 0.012
TC20032 35 0.012
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 35 0.012
AV780663 35 0.021
BP030058 34 0.027
AV410275 33 0.047
TC11625 weakly similar to UP|O81015 (O81015) At2g26920 protein, ... 33 0.061
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%) 33 0.061
TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.3... 33 0.061
AV427333 33 0.080
TC10478 33 0.080
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 42.7 bits (99), Expect = 8e-05
Identities = 41/127 (32%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
Frame = -1
Query: 159 PPQTSGTPQGVDGGGG-GYGGRGAGCLVDTKKLPEDVWGG-DAYSWSSLQNPSSFGSRGA 216
PPQ G G GGGG GYGG G G +P+ +GG Y PS G RG
Sbjct: 326 PPQ-GGRGGGYGGGGGPGYGGGGRG----GHGVPQQQYGGPPEYQGRGRGGPSQQGGRGG 162
Query: 217 STSKESEYGGLGGGVVRLTIHKIVEMNASLLAEGGDGGNKGGGGSGGSIYIKAYRMTGNG 276
Y G GGG G GG +GGGG G +G G
Sbjct: 161 -------YSGGGGGY-------------------GGGGGRGGGGMG----------SGRG 90
Query: 277 IISACGG 283
+ + GG
Sbjct: 89 VSPSHGG 69
Score = 36.2 bits (82), Expect = 0.007
Identities = 42/151 (27%), Positives = 49/151 (31%), Gaps = 4/151 (2%)
Frame = -1
Query: 146 GSVVNTTCMAGDPPPQTSGTPQGVDGGGGGYGGRGAGCLVDTKKLPEDVWGGDAYSWSSL 205
G ++T + PP Q + P G GG G GGRG G P G Y
Sbjct: 434 GQHSHSTERSAPPPQQAAAAPGG--GGPGPQGGRGYGG-------PPQGGRGGGYGGGGG 282
Query: 206 QNPSSFGSRGASTSKESEYGG----LGGGVVRLTIHKIVEMNASLLAEGGDGGNKGGGGS 261
G RG + +YGG G G +GG GG GGGG
Sbjct: 281 PGYGG-GGRGGHGVPQQQYGGPPEYQGRG------------RGGPSQQGGRGGYSGGGGG 141
Query: 262 GGSIYIKAYRMTGNGIISACGGNGFAGGGGG 292
G GG G GGG G
Sbjct: 140 YG------------------GGGGRGGGGMG 102
Score = 29.6 bits (65), Expect = 0.68
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 47 PPAPPPPPPHPPSVSC 62
PP PPPPP +PP C
Sbjct: 133 PPYPPPPPLYPPRPPC 180
Score = 28.5 bits (62), Expect = 1.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 47 PPAPPPPPPHPP 58
PP PPPPP+PP
Sbjct: 112 PPPRPPPPPYPP 147
Score = 26.9 bits (58), Expect = 4.4
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 47 PPAPPPPPPHPP 58
PP PP PPP PP
Sbjct: 283 PPPPP*PPPRPP 318
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 47 PPAPPPPPPHPP 58
PP PPPPP PP
Sbjct: 115 PPRPPPPPYPPP 150
Score = 26.2 bits (56), Expect = 7.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 47 PPAPPPPPPHPP 58
PP PPPP P PP
Sbjct: 253 PPRPPPP*PGPP 288
Score = 25.8 bits (55), Expect = 9.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 48 PAPPPPPPHPPSVSC 62
P PPPPP PP C
Sbjct: 277 PGPPPPP*PPPRPPC 321
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 41.6 bits (96), Expect = 2e-04
Identities = 37/123 (30%), Positives = 40/123 (32%)
Frame = +1
Query: 171 GGGGGYGGRGAGCLVDTKKLPEDVWGGDAYSWSSLQNPSSFGSRGASTSKESEYGGLGGG 230
GGGGG GGRG G G G +E YGG GG
Sbjct: 322 GGGGGGGGRGGG-----------------------------GYGGGGGRREGGYGGGGGS 414
Query: 231 VVRLTIHKIVEMNASLLAEGGDGGNKGGGGSGGSIYIKAYRMTGNGIISACGGNGFAGGG 290
GG GG GGGG GG + G+G S G G GGG
Sbjct: 415 ----------------RGYGGGGGGYGGGGGGGYGGRREGGYGGDGGGSRYGSGGGGGGG 546
Query: 291 GGR 293
R
Sbjct: 547 NWR 555
Score = 33.9 bits (76), Expect = 0.036
Identities = 43/148 (29%), Positives = 49/148 (33%)
Frame = +1
Query: 145 NGSVVNTTCMAGDPPPQTSGTPQGVDGGGGGYGGRGAGCLVDTKKLPEDVWGGDAYSWSS 204
NG+ ++ + + G G GGGGYGG G E +GG
Sbjct: 268 NGNELDGRNITVNEAQARGGGGGGGGRGGGGYGGGGG--------RREGGYGGGG----- 408
Query: 205 LQNPSSFGSRGASTSKESEYGGLGGGVVRLTIHKIVEMNASLLAEGGDGGNKGGGGSGGS 264
GSRG YGG GGG GG GG GG GG
Sbjct: 409 -------GSRG--------YGGGGGGY-----------------GGGGGGGYGGRREGG- 489
Query: 265 IYIKAYRMTGNGIISACGGNGFAGGGGG 292
Y G G GG GGGGG
Sbjct: 490 -----YGGDGGGSRYGSGG----GGGGG 546
Score = 31.2 bits (69), Expect = 0.23
Identities = 27/96 (28%), Positives = 31/96 (32%)
Frame = +1
Query: 164 GTPQGVDGGGGGYGGRGAGCLVDTKKLPEDVWGGDAYSWSSLQNPSSFGSRGASTSKESE 223
G +G GGGGGYGG G G +G R +E
Sbjct: 406 GGSRGYGGGGGGYGGGGGG---------------------------GYGGR-----REGG 489
Query: 224 YGGLGGGVVRLTIHKIVEMNASLLAEGGDGGNKGGG 259
YGG GGG + G GG GGG
Sbjct: 490 YGGDGGG-----------------SRYGSGGGGGGG 546
Score = 29.6 bits (65), Expect = 0.68
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 5/20 (25%)
Frame = -1
Query: 45 YSPPAPP-----PPPPHPPS 59
Y PP PP PPPP+PPS
Sbjct: 443 YPPPPPP*PRDPPPPPYPPS 384
Score = 29.3 bits (64), Expect = 0.88
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 45 YSPPAPPPPPPHPP 58
Y PP PPPPP PP
Sbjct: 362 YPPPPRPPPPPPPP 321
Score = 27.7 bits (60), Expect = 2.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
P PPPPPP+PP
Sbjct: 470 P*PPPPPPPYPP 435
Score = 27.7 bits (60), Expect = 2.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 45 YSPPAPPPPPPHPP 58
Y P PPPPP+PP
Sbjct: 395 YPPSRRPPPPPYPP 354
Score = 27.3 bits (59), Expect = 3.4
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP P PPPP PP
Sbjct: 374 PPPPYPPPPRPP 339
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PPP PP PP
Sbjct: 461 PPPPPPYPPPPP 426
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PPPP P PP
Sbjct: 464 PPPPPPPYPPPP 429
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PPPP P PP
Sbjct: 368 PPYPPPPRPPPP 333
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 47 PPAPPPPPPHP 57
PP PPPPPP P
Sbjct: 449 PPYPPPPPP*P 417
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PP PPP PP
Sbjct: 458 PPPPPYPPPPPP 423
Score = 25.8 bits (55), Expect = 9.8
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 9/22 (40%)
Frame = -1
Query: 47 PPAPPPP---------PPHPPS 59
PP PPPP PP+PPS
Sbjct: 545 PPPPPPPLP*REPPPSPPYPPS 480
>TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein {Danio
rerio;} , partial (5%)
Length = 678
Score = 41.2 bits (95), Expect = 2e-04
Identities = 39/121 (32%), Positives = 49/121 (40%)
Frame = -2
Query: 171 GGGGGYGGRGAGCLVDTKKLPEDVWGGDAYSWSSLQNPSSFGSRGASTSKESEYGGLGGG 230
GG GG GG G+G V + GGD S ++ GS GA + + GG GG
Sbjct: 515 GGDGGCGGEGSGVWVIVVR----ELGGDGVV-SDVRCVEGGGS-GALSVADMSKGGEGGM 354
Query: 231 VVRLTIHKIVEMNASLLAEGGDGGNKGGGGSGGSIYIKAYRMTGNGIISACGGNGFAGGG 290
VV GGDG +G S I + A G G++ G G GGG
Sbjct: 353 VVT------PYFGGGGGGCGGDGREQGKEASPDIIALPAITEAGGGVVGGRDGGGGCGGG 192
Query: 291 G 291
G
Sbjct: 191 G 189
Score = 30.4 bits (67), Expect = 0.40
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = -2
Query: 250 GGDGGNKGGGGSGGSIYIKAYRMTGNGIISACGGNGFAGGGGGRVS 295
GG GG++ G G G S + G+G++S GGGG V+
Sbjct: 659 GGGGGDRVGVGGGASSDVSGVDSRGSGVLSI---EDIGRGGGGMVA 531
Score = 27.3 bits (59), Expect = 3.4
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 46 SPPAPPPPPP 55
SPP PPPPPP
Sbjct: 307 SPPQPPPPPP 336
Score = 27.3 bits (59), Expect = 3.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 48 PAPPPPPPHPPSV 60
P+PPPP P PPS+
Sbjct: 184 PSPPPPQPPPPSL 222
Score = 26.2 bits (56), Expect = 7.5
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +1
Query: 33 VTDLDWSVFHQDYSPPAPPPP-PPH 56
+T LD SPP PPPP PPH
Sbjct: 604 LTSLDAPPPTPTLSPPPPPPPTPPH 678
Score = 25.8 bits (55), Expect = 9.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 46 SPPAPPPPPPHPP 58
S P+PP PPP PP
Sbjct: 298 SLPSPPQPPPPPP 336
Score = 25.8 bits (55), Expect = 9.8
Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 5/20 (25%)
Frame = +1
Query: 44 DYSPPAP-----PPPPPHPP 58
D PP P PPPPP PP
Sbjct: 616 DAPPPTPTLSPPPPPPPTPP 675
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 38.1 bits (87), Expect = 0.002
Identities = 45/141 (31%), Positives = 55/141 (38%), Gaps = 4/141 (2%)
Frame = -2
Query: 154 MAGDPPPQTSGTPQGVDGGGGGYGGRGA--GCLVDTKKLPEDVWGGDAYSWSSLQNPSSF 211
+ G P +G G +GGGGG GG G G + K + D W+ L
Sbjct: 824 IGGLPGGGNNGGKGGKNGGGGGGGGGGVKPGITIGGKGNKGEGGCFDGGGWNGL------ 663
Query: 212 GSRGASTSKESEYGGLGGGVVRLTIH--KIVEMNASLLAEGGDGGNKGGGGSGGSIYIKA 269
G G GGLGGG L I + N + GG GG G G SGG + K
Sbjct: 662 GING---------GGLGGG*NGLGISGGGLGG*NGLGKSGGGLGGWNGSGKSGGGLG*KG 510
Query: 270 YRMTGNGIISACGGNGFAGGG 290
+ G G G G GGG
Sbjct: 509 LGIRGGG----*NGLGINGGG 459
Score = 27.3 bits (59), Expect = 3.4
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 7/26 (26%)
Frame = +1
Query: 40 VFHQDYSPPAPPP-------PPPHPP 58
+F + PP+PPP PPP PP
Sbjct: 574 LFPNPFQPPSPPPLIPNPFQPPPSPP 651
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 47 PPAPPPPPPHPP 58
PP PPPPPP P
Sbjct: 748 PPPPPPPPPFFP 783
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 47 PPAPPPPPPHPP 58
PP PPPPP PP
Sbjct: 751 PPPPPPPPFFPP 786
Score = 26.2 bits (56), Expect = 7.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 46 SPPAPPPPPP 55
+PP PPPPPP
Sbjct: 742 TPPPPPPPPP 771
>BP052725
Length = 334
Score = 28.9 bits (63), Expect(2) = 0.002
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 29 DEFSVTDLDWSVFHQDYSPPAPPPPPP 55
+EFS+ D + DY P PPPPPP
Sbjct: 120 NEFSI*D-----YIHDYISPPPPPPPP 55
Score = 28.1 bits (61), Expect(2) = 0.002
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 48 PAPPPPPPHPPSVSCV 63
PAPPPPPP P C+
Sbjct: 79 PAPPPPPPLPLGGLCI 32
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 37.7 bits (86), Expect = 0.002
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +2
Query: 251 GDGGNKGGGGSGGSIYIKAYRMTGNGIISACGGNGFAGGGGG 292
G GG GGGG GG Y G S GG G+ G GGG
Sbjct: 596 GRGGGGGGGGYGGGRREGGYGGGGGSRYSGGGGGGYGGSGGG 721
Score = 30.4 bits (67), Expect = 0.40
Identities = 27/95 (28%), Positives = 31/95 (32%)
Frame = +2
Query: 167 QGVDGGGGGYGGRGAGCLVDTKKLPEDVWGGDAYSWSSLQNPSSFGSRGASTSKESEYGG 226
+G GGGGGYGG ++ GG YS G G +E GG
Sbjct: 599 RGGGGGGGGYGG-------GRREGGYGGGGGSRYSGGGGGGYGGSGGGGYGGRREGGGGG 757
Query: 227 LGGGVVRLTIHKIVEMNASLLAEGGDGGNKGGGGS 261
GG EGG G GGS
Sbjct: 758 YGGS-----------------REGGGGSRYSSGGS 811
Score = 30.0 bits (66), Expect = 0.52
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +2
Query: 251 GDGGNKGGGGSGGSIYIKAYRMTGNGIISACGGNGFAG---GGGG 292
G G +GG G GG Y G G GG G+ G GGGG
Sbjct: 629 GGGRREGGYGGGGG---SRYSGGGGGGYGGSGGGGYGGRREGGGG 754
Score = 27.7 bits (60), Expect = 2.6
Identities = 11/17 (64%), Positives = 12/17 (69%), Gaps = 4/17 (23%)
Frame = -1
Query: 47 PPAP----PPPPPHPPS 59
PP P PPPPP+PPS
Sbjct: 693 PPPPL*RLPPPPPYPPS 643
Score = 27.3 bits (59), Expect = 3.4
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 47 PPAPPPPPPHP 57
PP PPPPPP P
Sbjct: 633 PPYPPPPPPPP 601
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PPPPP PP
Sbjct: 636 PPPYPPPPPPPP 601
Score = 26.2 bits (56), Expect = 7.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PP PPP PP
Sbjct: 717 PPLPP*PPPPPP 682
Score = 25.8 bits (55), Expect = 9.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 48 PAPPPPPPHP 57
P PPPPPP P
Sbjct: 624 PPPPPPPPRP 595
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 37.4 bits (85), Expect = 0.003
Identities = 40/122 (32%), Positives = 41/122 (32%)
Frame = +3
Query: 171 GGGGGYGGRGAGCLVDTKKLPEDVWGGDAYSWSSLQNPSSFGSRGASTSKESEYGGLGGG 230
GGG G GGRG G +GG Y G RG GG GGG
Sbjct: 279 GGGAGGGGRGGG-----------GYGGGGYGGGGYGG----GGRGG--------GGYGGG 389
Query: 231 VVRLTIHKIVEMNASLLAEGGDGGNKGGGGSGGSIYIKAYRMTGNGIISACGGNGFAGGG 290
GG GG GGGG GG G G GG G GGG
Sbjct: 390 G----------------GYGGSGGYGGGGGYGGG---------GRG-----GGRG--GGG 473
Query: 291 GG 292
GG
Sbjct: 474 GG 479
Score = 35.8 bits (81), Expect = 0.009
Identities = 20/44 (45%), Positives = 21/44 (47%)
Frame = +3
Query: 250 GGDGGNKGGGGSGGSIYIKAYRMTGNGIISACGGNGFAGGGGGR 293
G GG GGGG GG Y G+G GG G G GGGR
Sbjct: 330 GYGGGGYGGGGRGGGGYGGGGGYGGSGGYGGGGGYGGGGRGGGR 461
Score = 29.6 bits (65), Expect = 0.68
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 45 YSPPAPPPPPPHPP 58
Y PP P PPPP PP
Sbjct: 397 YPPPPPYPPPPRPP 356
Score = 28.1 bits (61), Expect = 2.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 47 PPAPPPPPPHPPSVSC 62
PP PPPP P P V C
Sbjct: 310 PPRPPPPAPPPRRVPC 263
Score = 27.7 bits (60), Expect = 2.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PP PPP PP
Sbjct: 475 PPPPPRPPPRPP 440
Score = 27.7 bits (60), Expect = 2.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP P PPPP+PP
Sbjct: 361 PPPP*PPPPYPP 326
Score = 27.7 bits (60), Expect = 2.6
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1
Query: 49 APPPPPPHPP 58
APPPPPP PP
Sbjct: 481 APPPPPPRPP 452
Score = 26.9 bits (58), Expect = 4.4
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP P PPPP PP
Sbjct: 316 PPPPRPPPPAPP 281
Score = 26.9 bits (58), Expect = 4.4
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP P PPPP PP
Sbjct: 331 PPPP*PPPPRPP 296
Score = 26.9 bits (58), Expect = 4.4
Identities = 10/14 (71%), Positives = 11/14 (78%), Gaps = 2/14 (14%)
Frame = -1
Query: 47 PPAPPP--PPPHPP 58
PP PPP PPP+PP
Sbjct: 466 PPRPPPRPPPPYPP 425
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PPPP P PP
Sbjct: 454 PPRPPPPYPPPP 419
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PPPP P PP
Sbjct: 385 PPYPPPPRPPPP 350
Score = 26.2 bits (56), Expect = 7.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 47 PPAPPPPPPHPPS 59
PP PPPP P PP+
Sbjct: 325 PP*PPPPRPPPPA 287
Score = 26.2 bits (56), Expect = 7.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PPPPP PP
Sbjct: 403 PPYPPPPPYPPP 368
Score = 26.2 bits (56), Expect = 7.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP P PPPP PP
Sbjct: 376 PPPPRPPPP*PP 341
Score = 25.8 bits (55), Expect = 9.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PPPP P PP
Sbjct: 340 PPYPPPP*PPPP 305
Score = 25.8 bits (55), Expect = 9.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP PPPPP PP
Sbjct: 442 PPPYPPPPP*PP 407
Score = 25.8 bits (55), Expect = 9.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP P PPPP PP
Sbjct: 346 PPPPYPPPP*PP 311
Score = 25.8 bits (55), Expect = 9.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 164 GTPQGVDGGGGGYGGRG 180
G G GGGGGYGG G
Sbjct: 360 GRGGGGYGGGGGYGGSG 410
Score = 25.8 bits (55), Expect = 9.8
Identities = 10/15 (66%), Positives = 11/15 (72%), Gaps = 1/15 (6%)
Frame = -1
Query: 45 YSPPAP-PPPPPHPP 58
Y PP P PP PP+PP
Sbjct: 433 YPPPPP*PPLPPYPP 389
>TC9283
Length = 1307
Score = 36.2 bits (82), Expect = 0.007
Identities = 25/62 (40%), Positives = 31/62 (49%), Gaps = 4/62 (6%)
Frame = -2
Query: 236 IHKIVEMNAS--LLAEGGDGGNKGGGG--SGGSIYIKAYRMTGNGIISACGGNGFAGGGG 291
I ++E N S + AE G GG +GGGG SG + T + GG G GGGG
Sbjct: 241 IGTVLEENPSEVIFAEDGAGGVRGGGGGVSGHFQGVGGSGATDSNDSGEPGGGGGGGGGG 62
Query: 292 GR 293
GR
Sbjct: 61 GR 56
Score = 30.0 bits (66), Expect = 0.52
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 45 YSPPAPPPPPPHPPSVSCVDDLGGVGTLDTTCKIT 79
+ PP PPPPPP P S + + + C +T
Sbjct: 54 HRPPPPPPPPPPPGSPESFESVAPLPPTP*KCPLT 158
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 40 VFHQDYSPPAPPPPPPHPPSVSCVDDL 66
+ H+ PP PPPPP P S V L
Sbjct: 48 LLHRPPPPPPPPPPPGSPESFESVAPL 128
>AV425102
Length = 426
Score = 35.8 bits (81), Expect = 0.009
Identities = 15/32 (46%), Positives = 17/32 (52%)
Frame = +2
Query: 47 PPAPPPPPPHPPSVSCVDDLGGVGTLDTTCKI 78
PP PPPPPP PP +S L T C+I
Sbjct: 53 PPPPPPPPPPPPEISAS*PLKSATTPPNGCRI 148
>TC7926 homologue to UP|PGKH_TOBAC (Q42961) Phosphoglycerate kinase,
chloroplast precursor , partial (86%)
Length = 1857
Score = 35.4 bits (80), Expect = 0.012
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2
Query: 47 PPAPPPPPPHPPSVS 61
PP PPPPPPHPP S
Sbjct: 170 PPPPPPPPPHPPPAS 214
Score = 26.9 bits (58), Expect = 4.4
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +2
Query: 42 HQDYSPPAPPPPPPHPP 58
HQ S + PPPPP PP
Sbjct: 140 HQPLSLSSAPPPPPPPP 190
Score = 26.9 bits (58), Expect = 4.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 47 PPAPPPPPPHPPSVS 61
PP PPPP P P S S
Sbjct: 176 PPPPPPPHPPPASTS 220
Score = 26.2 bits (56), Expect = 7.5
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Frame = +2
Query: 31 FSVTDLDWSVFHQ----DYSPPAPPPPPPHPP 58
F L+W Q S PPPPPP PP
Sbjct: 101 FLSLSLEWHQRQQHQPLSLSSAPPPPPPPPPP 196
>TC20032
Length = 655
Score = 35.4 bits (80), Expect = 0.012
Identities = 29/90 (32%), Positives = 37/90 (40%), Gaps = 13/90 (14%)
Frame = +1
Query: 124 GSNASIVTGAFELESEYAVFENGSVVNTTCMAGD--PPPQTSGTPQGVDGGGGGY----- 176
G VTG E E F+ V+ AGD P P+T G +GGG G
Sbjct: 16 GERCFRVTGEAEGEGHVESFQATEAVDFRHAAGDSEPEPETPAVEXGSEGGGDGVVGVSE 195
Query: 177 ----GGRGAGCLV--DTKKLPEDVWGGDAY 200
GG G G V D +++ E GGD +
Sbjct: 196 DP*PGGVGVGGYVRGDMRRVEEGHGGGDEW 285
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 35.4 bits (80), Expect = 0.012
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 12/119 (10%)
Frame = -1
Query: 161 QTSGTPQGVDGGGGGY----GGRGAGCLVDTKKLPEDVWGGDAYSWSSLQNPSSFGSRGA 216
+ G P GV+ GGGG GG G G + + +V + G A
Sbjct: 364 EEGGVPFGVEEGGGGEAEVGGGEGEGGVAEEVAAAAEV--------GEVGGVEEVGPTAA 209
Query: 217 STSKESEYGGLGGGVVRLTIHKIVEMNASLLAEGGDGGNK--------GGGGSGGSIYI 267
+ E G G E+ ++ EGG+GG + GGGG GG ++I
Sbjct: 208 DEGEGREGRGWDAG---------EEVENDVVREGGNGGGRLLRWFGDGGGGGGGGVVWI 59
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 47 PPAPPPPPPHPP 58
PP PPPPPP P
Sbjct: 256 PPPPPPPPPLRP 291
Score = 25.8 bits (55), Expect = 9.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 47 PPAPPPPPP 55
PP PPPPPP
Sbjct: 253 PPPPPPPPP 279
Score = 25.8 bits (55), Expect = 9.8
Identities = 12/28 (42%), Positives = 14/28 (49%), Gaps = 9/28 (32%)
Frame = +3
Query: 43 QDYSPPAPPP---------PPPHPPSVS 61
Q PP PPP PPP PPS++
Sbjct: 63 QTTPPPPPPPPSPNHRNNLPPPFPPSLT 146
>AV780663
Length = 568
Score = 34.7 bits (78), Expect = 0.021
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -2
Query: 212 GSRGASTSKESEYGGLGGGVVRLTIH----KIVEMNASLLAEGGDGGNKGGGGSGGSIYI 267
G GA+ ++++ + G G V+ ++ H K V + S GG GG GGGGSGG
Sbjct: 255 GDVGAALAEDAVHEG-GLAVIDMSDHCHVAKAVGVEGS---SGGGGGRGGGGGSGG---- 100
Query: 268 KAYRMTGNGIISACGGNGFAGG 289
K G GG GF+GG
Sbjct: 99 KGA*EEARGRRRGRGG*GFSGG 34
Score = 26.9 bits (58), Expect = 4.4
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 47 PPAPPPPPPHPP 58
PP PPPPP PP
Sbjct: 101 PPLPPPPPRPPP 136
Score = 26.2 bits (56), Expect = 7.5
Identities = 9/17 (52%), Positives = 10/17 (57%)
Frame = +2
Query: 42 HQDYSPPAPPPPPPHPP 58
H + P PPPP P PP
Sbjct: 89 HAPFPPLPPPPPRPPPP 139
>BP030058
Length = 455
Score = 34.3 bits (77), Expect = 0.027
Identities = 21/48 (43%), Positives = 22/48 (45%)
Frame = +1
Query: 249 EGGDGGNKGGGGSGGSIYIKAYRMTGNGIISACGGNGFAGGGGGRVSV 296
EGG GG GGG GG G+G GG G GGGGG V
Sbjct: 310 EGGGGGGGDGGGGGGD---------GHG-SGGGGGEGDGGGGGGSPQV 423
Score = 33.1 bits (74), Expect = 0.061
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +1
Query: 250 GGDGGNKGGGGSGGSIYIKAYRMTGNGIISACGGNGFAGGGGG 292
GG+GG GGG GG G+G S GG GGGGG
Sbjct: 304 GGEGGGGGGGDGGGG--------GGDGHGSGGGGGEGDGGGGG 408
Score = 29.3 bits (64), Expect = 0.88
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 46 SPPAPPPPPPHPPSVS 61
SPP PPP PP PP S
Sbjct: 356 SPPPPPPSPPPPPPPS 309
Score = 28.9 bits (63), Expect = 1.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1
Query: 48 PAPPPPPPHPP 58
P+PPPPPP PP
Sbjct: 359 PSPPPPPPSPP 327
Score = 28.9 bits (63), Expect = 1.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 46 SPPAPPPPPPHPP 58
SPP PPPP P PP
Sbjct: 335 SPPPPPPPSPPPP 297
Score = 28.5 bits (62), Expect = 1.5
Identities = 15/36 (41%), Positives = 16/36 (43%)
Frame = +1
Query: 257 GGGGSGGSIYIKAYRMTGNGIISACGGNGFAGGGGG 292
GGGG G + G G GG G GGGGG
Sbjct: 247 GGGGDKGLQFCGQEGYFGGGGEGGGGGGGDGGGGGG 354
Score = 28.1 bits (61), Expect = 2.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
PP+PPPPPP P
Sbjct: 341 PPSPPPPPPPSP 306
Score = 27.7 bits (60), Expect = 2.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 47 PPAPPPPPPHPPSVSC 62
PP PPP PP P SC
Sbjct: 329 PPPPPPSPPPPKYPSC 282
Score = 27.7 bits (60), Expect = 2.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 47 PPAPPPPPPHPP 58
P PPPPPP PP
Sbjct: 338 PSPPPPPPPSPP 303
Score = 27.3 bits (59), Expect = 3.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 47 PPAPPPPPPHPPSVSC 62
PP PP P P PP + C
Sbjct: 407 PPPPPSPSPPPPPLPC 360
>AV410275
Length = 431
Score = 33.5 bits (75), Expect = 0.047
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +1
Query: 43 QDYSPPAPPPPPPHPPSVS 61
Q PP PPPPPP PPS S
Sbjct: 28 QSLPPPPPPPPPPPPPSWS 84
Score = 25.8 bits (55), Expect = 9.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 170 DGGGGGYGGRGAG 182
DGGGGG GG G G
Sbjct: 77 DGGGGGGGGGGGG 39
>TC11625 weakly similar to UP|O81015 (O81015) At2g26920 protein, partial
(8%)
Length = 410
Score = 33.1 bits (74), Expect = 0.061
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3
Query: 47 PPAPPPPPPHPPSVSCVDDLGGVGTLDT 74
PP PPPPPP PPS + + G L T
Sbjct: 294 PPPPPPPPPPPPSTTLLSLSETPGPLST 211
Score = 32.0 bits (71), Expect = 0.14
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 42 HQDYSPPAPPPPPPHPP 58
H PP PPPPPP PP
Sbjct: 312 HSTVIPPPPPPPPPPPP 262
Score = 28.1 bits (61), Expect = 2.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 48 PAPPPPPPHPPSVS 61
P PPPPPP PP S
Sbjct: 297 PPPPPPPPPPPPPS 256
Score = 27.3 bits (59), Expect = 3.4
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 169 VDGGGGGYGGRGAG 182
VDGGGGG GG G G
Sbjct: 254 VDGGGGGGGGGGGG 295
>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
Length = 1751
Score = 33.1 bits (74), Expect = 0.061
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -2
Query: 169 VDGGGGGYGGRGAGCLVDTKKLPEDVWGGDAYSWSSLQNPSSFGSRG--ASTSKESEYGG 226
V+GGGGG GG GAG E GGD Y G G A+ +E GG
Sbjct: 253 VEGGGGGAGGEGAG------GGEEVAAGGDGY-----------GGEGTVAAEEREGGEGG 125
Query: 227 LGGG 230
GGG
Sbjct: 124 SGGG 113
Score = 27.3 bits (59), Expect = 3.4
Identities = 12/17 (70%), Positives = 13/17 (75%), Gaps = 1/17 (5%)
Frame = +3
Query: 46 SPPAPPPP-PPHPPSVS 61
SP PPPP PP PPS+S
Sbjct: 99 SPLQPPPPLPPSPPSLS 149
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 46 SPPAPPPPP 54
SPPAPPPPP
Sbjct: 222 SPPAPPPPP 248
Score = 26.2 bits (56), Expect = 7.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 47 PPAPPPPPPHPP 58
PPAP PP P PP
Sbjct: 210 PPAPSPPAPPPP 245
>TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.33), partial
(12%)
Length = 565
Score = 33.1 bits (74), Expect = 0.061
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 43 QDYSPPAPPPPPPHPPSVS 61
Q +SPP PPPPPP P + S
Sbjct: 416 QPFSPPPPPPPPPSPTAPS 472
>AV427333
Length = 387
Score = 32.7 bits (73), Expect = 0.080
Identities = 19/43 (44%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Frame = -3
Query: 251 GDGGNKGGGGSGGSIYIKAYRMTGNGIISACG-GNGFAGGGGG 292
G+GG+ GGGG R G G+I CG G G GGGG
Sbjct: 364 GEGGSGGGGG----------RTCGGGVIG*CGDGGGRTCGGGG 266
Score = 26.9 bits (58), Expect = 4.4
Identities = 12/22 (54%), Positives = 13/22 (58%), Gaps = 2/22 (9%)
Frame = +3
Query: 42 HQDYSPP--APPPPPPHPPSVS 61
H +PP PPPPP PPS S
Sbjct: 303 HHPITPPPHVRPPPPPLPPSPS 368
Score = 26.2 bits (56), Expect = 7.5
Identities = 24/71 (33%), Positives = 25/71 (34%), Gaps = 4/71 (5%)
Frame = -3
Query: 164 GTPQGVDGGGGGYGGRGAGCLVDTKKLPEDVWGGDAYSWSSLQNPSSFGSRGASTSKESE 223
G G D GGGG G G GC + GGD W G G E
Sbjct: 271 GGVNG*DDGGGGDDGGGEGCPRGGGANE*EGGGGDLK*WE--------GVGGGLKGWEGG 116
Query: 224 YGGL----GGG 230
GGL GGG
Sbjct: 115 VGGL*GWEGGG 83
>TC10478
Length = 723
Score = 32.7 bits (73), Expect = 0.080
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = +2
Query: 46 SPPAPPPPPPHPPSV 60
SPP PPPPPP PP +
Sbjct: 203 SPPTPPPPPPTPPLI 247
Score = 28.5 bits (62), Expect = 1.5
Identities = 19/64 (29%), Positives = 26/64 (39%)
Frame = -1
Query: 229 GGVVRLTIHKIVEMNASLLAEGGDGGNKGGGGSGGSIYIKAYRMTGNGIISACGGNGFAG 288
GGV+ L + + G+G N G G S + + +G I GG G G
Sbjct: 399 GGVLELVCEVHYGGGLAGADDSGEGANGGDGLSQIGVSPPLVELVDHGEIGISGGVGGGG 220
Query: 289 GGGG 292
GG G
Sbjct: 219 GGVG 208
Score = 26.6 bits (57), Expect = 5.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 46 SPPAPPPPPPHPP 58
SPP+ PP PP PP
Sbjct: 191 SPPSSPPTPPPPP 229
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,840,795
Number of Sequences: 28460
Number of extensions: 149879
Number of successful extensions: 7660
Number of sequences better than 10.0: 444
Number of HSP's better than 10.0 without gapping: 3333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5932
length of query: 309
length of database: 4,897,600
effective HSP length: 90
effective length of query: 219
effective length of database: 2,336,200
effective search space: 511627800
effective search space used: 511627800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0233.21