TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0223.9
         (324 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV426340                                                              161  2e-40
AV410283                                                               30  0.72
TC12123 similar to GB|AAO39931.1|28372898|BT003703 At4g28730 {Ar...    29  0.94
TC18586 homologue to UP|Q9LTG4 (Q9LTG4) Acetyl-CoA synthetase, p...    28  1.6
TC10545 homologue to UP|Q9LKH8 (Q9LKH8) NADPH-protochlorophyllid...    28  2.7
TC11061 similar to PIR|T46895|T46895 acyl-CoA dehydrogenase  [va...    28  2.7
TC19050 weakly similar to UP|Q9M6T9 (Q9M6T9) Nonspecific lipid-t...    27  3.6
TC11503 similar to GB|AAO63311.1|28950775|BT005247 At3g02220 {Ar...    27  6.1
TC13348 weakly similar to UP|Q9LUJ4 (Q9LUJ4) Gb|AAF26800.1, part...    27  6.1
TC11474                                                                27  6.1
TC17023 homologue to UP|Q9FM19 (Q9FM19) Hypersensitive-induced r...    26  8.0
TC19774 weakly similar to UP|AAR92268 (AAR92268) At1g47570, part...    26  8.0
TC14406 similar to GB|AAM61587.1|21537246|AY085029 aluminum-indu...    26  8.0

>AV426340 
          Length = 435

 Score =  161 bits (407), Expect = 2e-40
 Identities = 84/108 (77%), Positives = 92/108 (84%), Gaps = 3/108 (2%)
 Frame = +3

Query: 1   MAPDLTTAATP-ITTTEQP--LATRAFVTFLAGNGDYVKGVVGLAKGLRKVQSIYPLVVA 57
           MAP+L   AT  +T   +P  L  RA+VTFLAGNGDYVKGVVGLAKGLRKV+S YPLVVA
Sbjct: 111 MAPELVPTATKSVTGFNRPVTLQKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVA 290

Query: 58  ILPDVPEEHRKILLSQGCIVREIVPVYPPKNQTQFAHAYYVINYSKLR 105
           +LPDVPEEHR+IL SQGCIVREI PVYPP+NQTQFA AYYVINYSKLR
Sbjct: 291 VLPDVPEEHREILESQGCIVREIEPVYPPENQTQFAMAYYVINYSKLR 434


>AV410283 
          Length = 426

 Score = 29.6 bits (65), Expect = 0.72
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
 Frame = -3

Query: 54  LVVAILPDVPEEHR------------KILLSQGCIVREIVPVYPPKNQTQFAHAYY 97
           L + I+P +P  HR             +LLSQ   + E +P YP KNQ   +H ++
Sbjct: 277 LELQIIP-IPSPHRTYQHNFQVKLVYSLLLSQLGFLYETIPYYPSKNQAAVSHQHH 113


>TC12123 similar to GB|AAO39931.1|28372898|BT003703 At4g28730 {Arabidopsis
           thaliana;}, partial (47%)
          Length = 511

 Score = 29.3 bits (64), Expect = 0.94
 Identities = 15/48 (31%), Positives = 26/48 (53%)
 Frame = +2

Query: 47  KVQSIYPLVVAILPDVPEEHRKILLSQGCIVREIVPVYPPKNQTQFAH 94
           K+ S  PL++ +L  +P+   +ILL      R  VP++   N T++ H
Sbjct: 299 KIPSRKPLLITLLLFIPKPGARILLR*NPCSRSSVPIHWSSNWTKWVH 442


>TC18586 homologue to UP|Q9LTG4 (Q9LTG4) Acetyl-CoA synthetase, partial
           (27%)
          Length = 561

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 12/34 (35%), Positives = 14/34 (40%)
 Frame = -1

Query: 149 PSWRHTKQYSIKYCQQCPDKVDWPSNFGPRPPLY 182
           P W   K   +  CQQCP     P N+ P    Y
Sbjct: 162 PMWGQCKILKLYICQQCPKNDQHPDNWVPLQTQY 61


>TC10545 homologue to UP|Q9LKH8 (Q9LKH8) NADPH-protochlorophyllide
           oxidoreductase, partial (37%)
          Length = 787

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = +1

Query: 40  GLAKGLRKVQSIYPLVVAILPDVPEEHRKIL 70
           G+ +  R VQ  +PLV A +P +PE H + L
Sbjct: 160 GMHRHNRLVQRAHPLVQAPVPSIPEVHNQRL 252


>TC11061 similar to PIR|T46895|T46895 acyl-CoA dehydrogenase  [validated] - 
                         Arabidopsis thaliana {Arabidopsis
           thaliana;} , partial (30%)
          Length = 488

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 12/32 (37%), Positives = 17/32 (52%)
 Frame = -2

Query: 240 LWRHPENVQLDKVKVVHYCAFGSKPWRFTGEE 271
           LW+   N+Q   +K+  +C FGS  W    EE
Sbjct: 148 LWKCSRNIQWW*IKIGRHCPFGSILWILRREE 53


>TC19050 weakly similar to UP|Q9M6T9 (Q9M6T9) Nonspecific lipid-transfer
           protein (LTP), partial (57%)
          Length = 579

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 13/45 (28%), Positives = 17/45 (36%)
 Frame = -3

Query: 134 MPDNQFYAVKDCFCEPSWRHTKQYSIKYCQQCPDKVDWPSNFGPR 178
           +P N  Y +  C C  SW    Q +  +C        W S  G R
Sbjct: 220 LPKNVPYPIAAC-CRDSWSRVPQVANAWCNSKRKLATWQSRIGER 89


>TC11503 similar to GB|AAO63311.1|28950775|BT005247 At3g02220 {Arabidopsis
           thaliana;}, partial (60%)
          Length = 975

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 162 CQQCPDKVDWPSNFGPRPPL 181
           C +C D++DW   +G   PL
Sbjct: 140 CPRCRDQIDWKRRYGKYKPL 199


>TC13348 weakly similar to UP|Q9LUJ4 (Q9LUJ4) Gb|AAF26800.1, partial (7%)
          Length = 539

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 10/13 (76%), Positives = 11/13 (83%)
 Frame = +3

Query: 192 PNLETYHDLLKTC 204
           P+LETYH LLK C
Sbjct: 135 PDLETYHPLLKMC 173


>TC11474 
          Length = 664

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 14/43 (32%), Positives = 20/43 (45%)
 Frame = +2

Query: 145 CFCEPSWRHTKQYSIKYCQQCPDKVDWPSNFGPRPPLYFNAGF 187
           C  EPS  H+K++ +   +    K  WP  F  RP +    GF
Sbjct: 167 CGLEPSGEHSKKFKMLTFKVLITKSCWPLLFVVRPQVLALIGF 295


>TC17023 homologue to UP|Q9FM19 (Q9FM19) Hypersensitive-induced response
           protein, partial (29%)
          Length = 510

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 260 FGSKPWRFTGEEEN 273
           FGS+PW  TGE E+
Sbjct: 101 FGSRPWYITGESEH 60


>TC19774 weakly similar to UP|AAR92268 (AAR92268) At1g47570, partial (19%)
          Length = 642

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 130 HLFDMPDNQFYAVKDCFCEPSWRHTKQYSIKYC 162
           H    P  Q   +  CF  P W++T Q S+ +C
Sbjct: 380 HCIPQPHQQVLYLDSCF--PLWQNTDQNSLLFC 288


>TC14406 similar to GB|AAM61587.1|21537246|AY085029 aluminum-induced
           protein-like {Arabidopsis thaliana;}, partial (66%)
          Length = 806

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = -2

Query: 174 NFGPRPPLYFNAGFF--VYEPNLETYHDLLKTCEATTPTSFAEQ 215
           +F P   L F+ G F  V     E  H   K C   +PT+F  Q
Sbjct: 727 DFQP*EHLXFHXGMFKXVQTSRCEKKHPFRKRCRGISPTAFRXQ 596


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,372,761
Number of Sequences: 28460
Number of extensions: 97863
Number of successful extensions: 473
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of query: 324
length of database: 4,897,600
effective HSP length: 90
effective length of query: 234
effective length of database: 2,336,200
effective search space: 546670800
effective search space used: 546670800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)