BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0197.11
(301 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI418821 403 e-113
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 142 9e-35
BP079571 96 6e-21
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 60 5e-10
TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, part... 60 6e-10
TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, par... 59 1e-09
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 51 9e-09
TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 54 2e-08
AU251550 52 9e-08
TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 52 2e-07
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 50 4e-07
BP034485 49 1e-06
AV773507 47 4e-06
TC19911 weakly similar to PIR|A44805|A44805 eggshell protein pre... 46 7e-06
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 46 7e-06
AV420911 45 1e-05
TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein... 45 2e-05
TC8694 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation ... 43 6e-05
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 43 6e-05
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 42 1e-04
>BI418821
Length = 614
Score = 403 bits (1035), Expect = e-113
Identities = 183/183 (100%), Positives = 183/183 (100%)
Frame = +2
Query: 1 MAEERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGD 60
MAEERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGD
Sbjct: 65 MAEERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGD 244
Query: 61 NDKTKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLA 120
NDKTKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLA
Sbjct: 245 NDKTKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLA 424
Query: 121 RDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNR 180
RDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNR
Sbjct: 425 RDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNR 604
Query: 181 SNN 183
SNN
Sbjct: 605 SNN 613
Score = 121 bits (304), Expect = 1e-28
Identities = 52/84 (61%), Positives = 59/84 (69%)
Frame = +2
Query: 183 NSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGP 242
N GGGGGGGG CY CG GHLARDC R N GGGG G A+C+ CG GH+ARDC +
Sbjct: 359 NGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGG-GGAACYNCGDAGHLARDCNRSNNN 535
Query: 243 SSGGVGGGGCFRCGEVGHLARDCD 266
S GG G GC+ CG+ GHLARDC+
Sbjct: 536 SGGG--GAGCYNCGDTGHLARDCN 601
Score = 102 bits (255), Expect = 6e-23
Identities = 49/91 (53%), Positives = 58/91 (62%), Gaps = 3/91 (3%)
Frame = +2
Query: 209 RGG---NGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDC 265
RGG NGGGGG G C+ CG GH+ARDC + + GG GG C+ CG+ GHLARDC
Sbjct: 341 RGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNN-NGGGGGGAACYNCGDAGHLARDC 517
Query: 266 DGGVAVSGGGGNAGRNTCFNCGKPGHFAREC 296
+ SGGGG AG C+NCG GH AR+C
Sbjct: 518 NRSNNNSGGGG-AG---CYNCGDTGHLARDC 598
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 142 bits (357), Expect = 9e-35
Identities = 91/217 (41%), Positives = 109/217 (49%)
Frame = +3
Query: 1 MAEERFSGVVQWFNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVEFSIATGD 60
M++ R +G V+WFN+ KGFGFI PDDGG+DLFVHQS I+S+G+R L EG+ VEF +A+
Sbjct: 33 MSDSRVNGKVKWFNDQKGFGFITPDDGGDDLFVHQSEIKSEGFRCLGEGEDVEFIVASDP 212
Query: 61 NDKTKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLA 120
+ + KA++VTGPNG A+Q TR+ GG GG R GGG GGGG G
Sbjct: 213 DGRAKAIEVTGPNGQAVQGTRR-------GGGAGGGGRGGGGYGGGGYG----------- 338
Query: 121 RDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNR 180
GGGG G Y GGGG G
Sbjct: 339 -----GGGYGGGGRGGGGY------------------GGGGGYG---------------- 401
Query: 181 SNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGG 217
SGG GGGGG Y GG G GG GGGGG
Sbjct: 402 --GSGGYGGGGG--YGGGGRG--------GGRGGGGG 476
Score = 43.5 bits (101), Expect = 4e-05
Identities = 37/107 (34%), Positives = 41/107 (37%), Gaps = 2/107 (1%)
Frame = +3
Query: 171 TGHLARDCNRSNNSGGGGGG--GGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGG 228
TG + + GG GGG GG Y GG+G GG GGGG G GG
Sbjct: 240 TGPNGQAVQGTRRGGGAGGGGRGGGGYGGGGYG--------GGGYGGGGRGGGGYGGGGG 395
Query: 229 IGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGG 275
G SGG GGGG + G G GG GGG
Sbjct: 396 YG------------GSGGYGGGGGYGGGGRG-------GGRGGGGGG 479
Score = 37.7 bits (86), Expect = 0.002
Identities = 31/92 (33%), Positives = 32/92 (34%)
Frame = +3
Query: 189 GGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVG 248
G A G G + RGG GGGG G GG G G GG G
Sbjct: 216 GRAKAIEVTGPNGQAVQGTRRGGGAGGGGRGG------GGYG--------GGGYGGGGYG 353
Query: 249 GGGCFRCGEVGHLARDCDGGVAVSGGGGNAGR 280
GGG G G GG GG G GR
Sbjct: 354 GGGRGGGGYGGGGGYGGSGGYGGGGGYGGGGR 449
>BP079571
Length = 414
Score = 96.3 bits (238), Expect = 6e-21
Identities = 48/70 (68%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = -1
Query: 233 ARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGGGNA-GRNTCFNCGKPGH 291
ARDCAT KGPS+GGVGGGGCFR GEVGHLARDCDGGVAV+ ++T G G
Sbjct: 414 ARDCATPKGPSNGGVGGGGCFRFGEVGHLARDCDGGVAVTWWWWECWEKHTASIVGSLGT 235
Query: 292 FARECIEASG 301
FAREC+EASG
Sbjct: 234 FARECLEASG 205
Score = 47.0 bits (110), Expect = 4e-06
Identities = 28/76 (36%), Positives = 33/76 (42%), Gaps = 9/76 (11%)
Frame = -1
Query: 175 ARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRC-------- 226
ARDC GG GGG C+ G GHLARDC GG + + C
Sbjct: 414 ARDCATPKGPSNGGVGGGGCFRFGEVGHLARDC------DGGVAVTWWWWECWEKHTASI 253
Query: 227 -GGIGHMARDCATAKG 241
G +G AR+C A G
Sbjct: 252 VGSLGTFARECLEASG 205
Score = 43.1 bits (100), Expect = 6e-05
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Frame = -1
Query: 148 ARDCN--RSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTC-------- 197
ARDC + +N G GG GC+ G+ GHLARDC+ GG + C
Sbjct: 414 ARDCATPKGPSNGGVGGGGCFRFGEVGHLARDCD------GGVAVTWWWWECWEKHTASI 253
Query: 198 -GGFGHLARDCM 208
G G AR+C+
Sbjct: 252 VGSLGTFARECL 217
Score = 40.8 bits (94), Expect = 3e-04
Identities = 23/58 (39%), Positives = 28/58 (47%), Gaps = 9/58 (15%)
Frame = -1
Query: 103 GGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNC---------GDAGHLARDC 151
GG GGGGC+ G+ GHLARDC +GG + C G G AR+C
Sbjct: 378 GGVGGGGCFRFGEVGHLARDC-----DGGVAVTWWWWECWEKHTASIVGSLGTFAREC 220
Score = 40.0 bits (92), Expect = 5e-04
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = -1
Query: 120 ARDCH--RSNNNGGGGGGAACYNCGDAGHLARDCN 152
ARDC + +NGG GGG C+ G+ GHLARDC+
Sbjct: 414 ARDCATPKGPSNGGVGGGG-CFRFGEVGHLARDCD 313
Score = 26.9 bits (58), Expect = 4.2
Identities = 18/41 (43%), Positives = 20/41 (47%), Gaps = 12/41 (29%)
Frame = -2
Query: 273 GGGGNAGRNTCF-----------NCGKP-GHFARECIEASG 301
GGGGNAGRNT N KP G ARE ++ G
Sbjct: 293 GGGGNAGRNTLLPLWEAWALLLGNALKPLGESAREDLKREG 171
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 60.1 bits (144), Expect = 5e-10
Identities = 47/142 (33%), Positives = 55/142 (38%), Gaps = 3/142 (2%)
Frame = +1
Query: 54 FSIATGDNDKTKAVDVTGPNGAALQP---TRKDSAPRGFGGWRGGERRNGGGGGGGGGGC 110
F T +++ + G NG L T ++ RG GG GG GGGG GGGGG
Sbjct: 211 FGFVTFTSEEAMRSAIEGMNGNELDGRNITVNEAQARGGGGGGGGR---GGGGYGGGGG- 378
Query: 111 YNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGD 170
R GGGGG+ Y G G+ GGGG G Y
Sbjct: 379 --------------RREGGYGGGGGSRGYGGGGGGY------------GGGGGGGYGGRR 480
Query: 171 TGHLARDCNRSNNSGGGGGGGG 192
G D S GGGGGGG
Sbjct: 481 EGGYGGDGGGSRYGSGGGGGGG 546
Score = 48.1 bits (113), Expect = 2e-06
Identities = 32/93 (34%), Positives = 38/93 (40%)
Frame = +1
Query: 125 RSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNS 184
++ GGGGGG G G+ R GGGG+ Y G G+
Sbjct: 313 QARGGGGGGGGR-----GGGGYGGGGGRREGGYGGGGGSRGYGGGGGGY----------- 444
Query: 185 GGGGGGGGACYTCGGFGHLARDCMRGGNGGGGG 217
GGGGGGG GG+G G GGGGG
Sbjct: 445 GGGGGGGYGGRREGGYGGDGGGSRYGSGGGGGG 543
Score = 46.6 bits (109), Expect = 5e-06
Identities = 36/101 (35%), Positives = 38/101 (36%)
Frame = +1
Query: 179 NRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCAT 238
N + GGGGGGGG RGG G GGG G R GG G
Sbjct: 304 NEAQARGGGGGGGG----------------RGGGGYGGGGGR----REGGYGGGGGSRGY 423
Query: 239 AKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGGGNAG 279
G G GGGG + G D G SGGGG G
Sbjct: 424 GGGGGGYGGGGGGGYGGRREGGYGGDGGGSRYGSGGGGGGG 546
Score = 41.6 bits (96), Expect = 2e-04
Identities = 48/158 (30%), Positives = 51/158 (31%)
Frame = +1
Query: 97 RRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNN 156
R GGGGGG GGG Y GGGGG R
Sbjct: 319 RGGGGGGGGRGGGGY-------------------GGGGG----------------RREGG 393
Query: 157 NSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGG 216
GGGG+ Y GGGGGG Y G GGGG
Sbjct: 394 YGGGGGSRGY--------------------GGGGGG--Y---------------GGGGGG 462
Query: 217 GPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFR 254
G G GG G +R SGG GGGG +R
Sbjct: 463 GYGGRREGGYGGDGGGSR-------YGSGGGGGGGNWR 555
>TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (56%)
Length = 598
Score = 59.7 bits (143), Expect = 6e-10
Identities = 37/107 (34%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Frame = +1
Query: 52 VEFSIATGDNDKTKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGERRN----GGGGGGGG 107
VEFS +D +D +G+ L PRG GG R+ G G G
Sbjct: 205 VEFSDPRDADDARYNLDGRDVDGSRLIVEFAKGVPRGSREGGGGRDRDREYMGRGPPPGS 384
Query: 108 GGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRS 154
G C+NCG GH ARDC G CY CG+ GH+ ++C S
Sbjct: 385 GRCFNCGIDGHWARDCK------AGDWKNKCYRCGERGHIEKNCKNS 507
Score = 54.7 bits (130), Expect = 2e-08
Identities = 33/91 (36%), Positives = 39/91 (42%)
Frame = +1
Query: 175 ARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMAR 234
A+ R + GGGG RD R G G PGS CF CG GH AR
Sbjct: 295 AKGVPRGSREGGGG----------------RDRDREYMGRGPPPGSGRCFNCGIDGHWAR 426
Query: 235 DCATAKGPSSGGVGGGGCFRCGEVGHLARDC 265
DC G C+RCGE GH+ ++C
Sbjct: 427 DC-------KAGDWKNKCYRCGERGHIEKNC 498
Score = 47.4 bits (111), Expect = 3e-06
Identities = 32/93 (34%), Positives = 38/93 (40%)
Frame = +1
Query: 204 ARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLAR 263
A+ RG GGGG R +M R GP G G CF CG GH AR
Sbjct: 295 AKGVPRGSREGGGG-------RDRDREYMGR------GPPPGS---GRCFNCGIDGHWAR 426
Query: 264 DCDGGVAVSGGGGNAGRNTCFNCGKPGHFAREC 296
DC G +N C+ CG+ GH + C
Sbjct: 427 DCKAG---------DWKNKCYRCGERGHIEKNC 498
Score = 46.6 bits (109), Expect = 5e-06
Identities = 29/90 (32%), Positives = 36/90 (39%), Gaps = 2/90 (2%)
Frame = +1
Query: 120 ARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGG--GGAGCYNCGDTGHLARD 177
A+ R + GGGG RD +R G G C+NCG GH ARD
Sbjct: 295 AKGVPRGSREGGGG---------------RDRDREYMGRGPPPGSGRCFNCGIDGHWARD 429
Query: 178 CNRSNNSGGGGGGGGACYTCGGFGHLARDC 207
C G CY CG GH+ ++C
Sbjct: 430 CK-------AGDWKNKCYRCGERGHIEKNC 498
>TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (62%)
Length = 684
Score = 58.9 bits (141), Expect = 1e-09
Identities = 29/65 (44%), Positives = 32/65 (48%)
Frame = +2
Query: 90 GGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLAR 149
GG RG G G G G C+NCG GH ARDC G CY CGD GH+ R
Sbjct: 311 GGPRGNREYLGRGPPPGSGRCFNCGLDGHWARDCK------AGDWKNKCYRCGDRGHVER 472
Query: 150 DCNRS 154
+C S
Sbjct: 473 NCKNS 487
Score = 51.2 bits (121), Expect = 2e-07
Identities = 24/53 (45%), Positives = 28/53 (52%)
Frame = +2
Query: 213 GGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDC 265
G G PGS CF CG GH ARDC G C+RCG+ GH+ R+C
Sbjct: 341 GRGPPPGSGRCFNCGLDGHWARDC-------KAGDWKNKCYRCGDRGHVERNC 478
Score = 50.4 bits (119), Expect = 4e-07
Identities = 22/48 (45%), Positives = 26/48 (53%)
Frame = +2
Query: 134 GGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRS 181
G C+NCG GH ARDC +G CY CGD GH+ R+C S
Sbjct: 359 GSGRCFNCGLDGHWARDCK-----AGDWKNKCYRCGDRGHVERNCKNS 487
Score = 47.0 bits (110), Expect = 4e-06
Identities = 23/58 (39%), Positives = 27/58 (45%)
Frame = +2
Query: 179 NRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDC 236
NR G G G C+ CG GH ARDC G C+RCG GH+ R+C
Sbjct: 326 NREYLGRGPPPGSGRCFNCGLDGHWARDCK-------AGDWKNKCYRCGDRGHVERNC 478
Score = 46.2 bits (108), Expect = 7e-06
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = +2
Query: 248 GGGGCFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFAREC 296
G G CF CG GH ARDC G +N C+ CG GH R C
Sbjct: 359 GSGRCFNCGLDGHWARDCKAG---------DWKNKCYRCGDRGHVERNC 478
Score = 34.3 bits (77), Expect = 0.026
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 273 GGGGNAGRNTCFNCGKPGHFAREC 296
G G G CFNCG GH+AR+C
Sbjct: 341 GRGPPPGSGRCFNCGLDGHWARDC 412
>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
Length = 555
Score = 51.2 bits (121), Expect(2) = 9e-09
Identities = 27/82 (32%), Positives = 36/82 (42%)
Frame = +2
Query: 97 RRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNN 156
RR+ G C NC GH AR+C A C+NCG GH+A +C +
Sbjct: 305 RRDSRRGFSRDNLCKNCKRPGHFARECPNV---------AICHNCGLPGHIASECTTKSL 457
Query: 157 NSGGGGAGCYNCGDTGHLARDC 178
C+NC + GH+A C
Sbjct: 458 --------CWNCKEPGHMASSC 499
Score = 46.6 bits (109), Expect(2) = 2e-07
Identities = 26/88 (29%), Positives = 36/88 (40%)
Frame = +2
Query: 124 HRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNN 183
+R ++ G C NC GH AR+C A C+NCG GH+A +C +
Sbjct: 302 YRRDSRRGFSRDNLCKNCKRPGHFARECPNV--------AICHNCGLPGHIASECTTKS- 454
Query: 184 SGGGGGGGGACYTCGGFGHLARDCMRGG 211
C+ C GH+A C G
Sbjct: 455 ---------LCWNCKEPGHMASSCPNDG 511
Score = 45.4 bits (106), Expect(2) = 3e-07
Identities = 28/90 (31%), Positives = 34/90 (37%)
Frame = +2
Query: 176 RDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARD 235
RD +S G C C GH AR+C P A C CG GH+A +
Sbjct: 290 RDAPYRRDSRRGFSRDNLCKNCKRPGHFAREC----------PNVAICHNCGLPGHIASE 439
Query: 236 CATAKGPSSGGVGGGGCFRCGEVGHLARDC 265
C T C+ C E GH+A C
Sbjct: 440 CTTK----------SLCWNCKEPGHMASSC 499
Score = 42.4 bits (98), Expect = 1e-04
Identities = 22/74 (29%), Positives = 29/74 (38%)
Frame = +2
Query: 223 CFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGGGNAGRNT 282
C C GH AR+C C CG GH+A +C ++
Sbjct: 344 CKNCKRPGHFARECPNV----------AICHNCGLPGHIASEC------------TTKSL 457
Query: 283 CFNCGKPGHFAREC 296
C+NC +PGH A C
Sbjct: 458 CWNCKEPGHMASSC 499
Score = 40.0 bits (92), Expect = 5e-04
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = +2
Query: 165 CYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCF 224
C NC GH AR+C C+ CG GH+A +C + C+
Sbjct: 344 CKNCKRPGHFARECPNV----------AICHNCGLPGHIASECTT----------KSLCW 463
Query: 225 RCGGIGHMARDC 236
C GHMA C
Sbjct: 464 NCKEPGHMASSC 499
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/49 (40%), Positives = 22/49 (44%)
Frame = +2
Query: 252 CFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFARECIEAS 300
C C GH AR+C VA+ C NCG PGH A EC S
Sbjct: 344 CKNCKRPGHFARECPN-VAI-----------CHNCGLPGHIASECTTKS 454
Score = 33.9 bits (76), Expect = 0.035
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 281 NTCFNCGKPGHFAREC 296
N C NC +PGHFAREC
Sbjct: 338 NLCKNCKRPGHFAREC 385
Score = 24.6 bits (52), Expect(2) = 3e-07
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1
Query: 286 CGKPGHFAREC 296
CGK GH AREC
Sbjct: 523 CGKVGHRAREC 555
Score = 24.6 bits (52), Expect(2) = 2e-07
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 255 CGEVGHLARDC 265
CG+VGH AR+C
Sbjct: 523 CGKVGHRAREC 555
Score = 24.3 bits (51), Expect(2) = 9e-09
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 195 YTCGGFGHLARDC 207
+TCG GH AR+C
Sbjct: 517 HTCGKVGHRAREC 555
>TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (89%)
Length = 912
Score = 54.3 bits (129), Expect = 2e-08
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +1
Query: 68 DVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSN 127
++ G NG ++ + G GG G R+GGGGGG CY CG+ GH AR+C
Sbjct: 253 ELDGKNGWRVELSHNSRGGGGGGGGGRGGGRSGGGGGGSDMKCYECGEPGHFARECRMRG 432
Query: 128 NNG 130
+G
Sbjct: 433 GSG 441
Score = 52.0 bits (123), Expect = 1e-07
Identities = 28/61 (45%), Positives = 32/61 (51%)
Frame = +1
Query: 181 SNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAK 240
S+NS GGGGGGG GG G G +GGGGG C+ CG GH AR+C
Sbjct: 289 SHNSRGGGGGGG-----GGRGG-------GRSGGGGGGSDMKCYECGEPGHFARECRMRG 432
Query: 241 G 241
G
Sbjct: 433 G 435
Score = 51.2 bits (121), Expect = 2e-07
Identities = 28/76 (36%), Positives = 30/76 (38%), Gaps = 4/76 (5%)
Frame = +1
Query: 114 GDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAG----CYNCG 169
G G H S GGGGGG R SGGGG G CY CG
Sbjct: 262 GKNGWRVELSHNSRGGGGGGGGG----------------RGGGRSGGGGGGSDMKCYECG 393
Query: 170 DTGHLARDCNRSNNSG 185
+ GH AR+C SG
Sbjct: 394 EPGHFARECRMRGGSG 441
Score = 49.7 bits (117), Expect = 6e-07
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 154 SNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDC-MRGGN 212
S+N+ GGGG G G + GGGGG CY CG GH AR+C MRGG+
Sbjct: 289 SHNSRGGGGGGGGGRGG----------GRSGGGGGGSDMKCYECGEPGHFARECRMRGGS 438
Query: 213 G 213
G
Sbjct: 439 G 441
Score = 47.8 bits (112), Expect = 2e-06
Identities = 25/54 (46%), Positives = 27/54 (49%)
Frame = +1
Query: 243 SSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGGGNAGRNTCFNCGKPGHFAREC 296
S GG GGGG R G SGGGG C+ CG+PGHFAREC
Sbjct: 298 SRGGGGGGGGGRGG-------------GRSGGGGGGSDMKCYECGEPGHFAREC 420
Score = 43.9 bits (102), Expect = 3e-05
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +1
Query: 203 LARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGG---CFRCGEVG 259
L+ + GG GGGGG G G SGG GGG C+ CGE G
Sbjct: 286 LSHNSRGGGGGGGGGRG---------------------GGRSGGGGGGSDMKCYECGEPG 402
Query: 260 HLARDCDGGVAVSGGGG 276
H AR+C + GG G
Sbjct: 403 HFAREC----RMRGGSG 441
>AU251550
Length = 329
Score = 52.4 bits (124), Expect = 9e-08
Identities = 44/126 (34%), Positives = 45/126 (34%), Gaps = 4/126 (3%)
Frame = -3
Query: 102 GGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGG 161
GGG G GGC CG G N GGGG G C GGG
Sbjct: 327 GGGPGPGGCGGCGGPGGPGGGGG**NMAGGGGDGGPC--------------------GGG 208
Query: 162 GAGCYNCGDTGHLARDCNRSNNSGGGGGGG----GACYTCGGFGHLARDCMRGGNGGGGG 217
G C N G G + GG GGGG G C GG G G GG GG
Sbjct: 207 GW*CPNGGGGG-----AGA*GSRGGPGGGGL**PGGCGGPGGGG-----LW*PGGGGPGG 58
Query: 218 PGSASC 223
PG C
Sbjct: 57 PGGPGC 40
Score = 37.0 bits (84), Expect = 0.004
Identities = 31/86 (36%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Frame = -3
Query: 215 GGGPGSASCFRCGGIGHMARDCATAKGPSSGG------VGGGGCFRCGEVGHLARDCDGG 268
GGGPG C CGG G GP GG GGG CG G + GG
Sbjct: 327 GGGPGPGGCGGCGGPG----------GPGGGGG**NMAGGGGDGGPCGGGGW*CPNGGGG 178
Query: 269 VAVS----GGGGNAGRNTCFNCGKPG 290
A + GG G G CG PG
Sbjct: 177 GAGA*GSRGGPGGGGL**PGGCGGPG 100
Score = 37.0 bits (84), Expect = 0.004
Identities = 46/149 (30%), Positives = 48/149 (31%), Gaps = 6/149 (4%)
Frame = -3
Query: 86 PRGFGGWRGGERRNGGGGGG--GGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGD 143
P G GG G GGGG G GGG + C N GGGG GA
Sbjct: 285 PGGPGGGGG**NMAGGGGDGGPCGGGGW*C-------------PNGGGGGAGA------- 166
Query: 144 AGHLARDCNRSNNNSGGGG----AGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGG 199
S GGGG GC GG GGG + GG
Sbjct: 165 --------*GSRGGPGGGGL**PGGC---------------------GGPGGGGLW*PGG 73
Query: 200 FGHLARDCMRGGNGGGGGPGSASCFRCGG 228
GG GG GGPG CGG
Sbjct: 72 ----------GGPGGPGGPG------CGG 34
>TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (42%)
Length = 587
Score = 51.6 bits (122), Expect = 2e-07
Identities = 30/77 (38%), Positives = 33/77 (41%)
Frame = +1
Query: 88 GFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHL 147
G GWR N GGGGG GG G GG CY CG+ GH
Sbjct: 70 GKNGWRVELSHNSKGGGGGRGG------------------GRGRGGEDLKCYECGEPGHF 195
Query: 148 ARDCNRSNNNSGGGGAG 164
AR+C RS S G G+G
Sbjct: 196 AREC-RSRGGSRGLGSG 243
Score = 42.4 bits (98), Expect = 1e-04
Identities = 27/70 (38%), Positives = 32/70 (45%)
Frame = +1
Query: 181 SNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAK 240
S+NS GGGGG G GG G GG C+ CG GH AR+C +
Sbjct: 97 SHNSKGGGGGRG-----------------GGRGRGGE--DLKCYECGEPGHFARECRSRG 219
Query: 241 GPSSGGVGGG 250
G S G+G G
Sbjct: 220 G--SRGLGSG 243
Score = 42.4 bits (98), Expect = 1e-04
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Frame = +1
Query: 182 NNSGGGGGGGGA---------CYTCGGFGHLARDCMRGGNGGGGGPG 219
N+ GGGGG GG CY CG GH AR+C G G G G
Sbjct: 103 NSKGGGGGRGGGRGRGGEDLKCYECGEPGHFARECRSRGGSRGLGSG 243
Score = 42.0 bits (97), Expect = 1e-04
Identities = 22/65 (33%), Positives = 26/65 (39%)
Frame = +1
Query: 126 SNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSG 185
S+N+ GGGGG GG CY CG+ GH AR+C S
Sbjct: 97 SHNSKGGGGGRG----------------GGRGRGGEDLKCYECGEPGHFARECRSRGGSR 228
Query: 186 GGGGG 190
G G G
Sbjct: 229 GLGSG 243
Score = 41.6 bits (96), Expect = 2e-04
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 267 GGVAVSGGGGNAGRNT-CFNCGKPGHFARECIEASG 301
GG GG G G + C+ CG+PGHFAREC G
Sbjct: 115 GGGGRGGGRGRGGEDLKCYECGEPGHFARECRSRGG 222
Score = 34.7 bits (78), Expect = 0.020
Identities = 19/41 (46%), Positives = 21/41 (50%), Gaps = 6/41 (14%)
Frame = +1
Query: 241 GPSSGGVGGGG----CFRCGEVGHLARDC--DGGVAVSGGG 275
G GG G GG C+ CGE GH AR+C GG G G
Sbjct: 121 GGRGGGRGRGGEDLKCYECGEPGHFARECRSRGGSRGLGSG 243
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 50.4 bits (119), Expect = 4e-07
Identities = 55/166 (33%), Positives = 63/166 (37%), Gaps = 6/166 (3%)
Frame = -2
Query: 90 GGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLAR 149
GG GG+ GGGGGGGGG G T N G GG C D G
Sbjct: 806 GGNNGGKGGKNGGGGGGGGGGVKPGIT------IGGKGNKGEGG-------CFDGG---- 678
Query: 150 DCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGG-GGGGGACYTCGGFGHLARDCM 208
N N GG G G G +G N SGGG GG G+ + GG G
Sbjct: 677 GWNGLGINGGGLGGG*NGLGISGGGLGG*NGLGKSGGGLGGWNGSGKSGGGLG*KGLGIR 498
Query: 209 RGG-NG----GGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGG 249
GG NG GGG G + G+G +G G+GG
Sbjct: 497 GGG*NGLGINGGG*KGLGTNGG*NGLG--------IRGGGKNGIGG 384
>BP034485
Length = 485
Score = 48.9 bits (115), Expect = 1e-06
Identities = 49/178 (27%), Positives = 66/178 (36%), Gaps = 4/178 (2%)
Frame = +3
Query: 59 GDNDKTKAVDVTGPNGAALQPTRKDSAPRGFGGWR----GGERRNGGGGGGGGGGCYNCG 114
G N + G G + +K + + GG+ G +++ GGGGGGG N
Sbjct: 6 GGNKSKEGKQKGGGGGDSSSDKKKKTKDKNGGGFLVKFLGLGKKSKKGGGGGGGETAN-- 179
Query: 115 DTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHL 174
++ +++ NNGGG N G G GGGG G + D
Sbjct: 180 ------KNKNKNKNNGGGN------NKGKEG-----------KKGGGGGGKLDKIDFDFQ 290
Query: 175 ARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHM 232
D SGG GGGGG G H GGN G G + G +G M
Sbjct: 291 DFDIPSHGKSGGKGGGGGGKGNKNGHDH---GHGIGGNMNGNGGHMDPMSQLGSMGQM 455
Score = 40.0 bits (92), Expect = 5e-04
Identities = 48/187 (25%), Positives = 67/187 (35%), Gaps = 1/187 (0%)
Frame = +3
Query: 94 GGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNR 153
GG + G GGGGG + ++ + GGG G
Sbjct: 6 GGNKSKEGKQKGGGGGDSSSDKK-------KKTKDKNGGGFLVKFLGLG----------- 131
Query: 154 SNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNG 213
+ GGGG G G+T + ++ N++ N+GGG G + G
Sbjct: 132 KKSKKGGGGGG----GETAN--KNKNKNKNNGGGNNKG-----------------KEGKK 242
Query: 214 GGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSG 273
GGGG G + I +D SGG GGGG + + GH D G + G
Sbjct: 243 GGGGGG-----KLDKIDFDFQDFDIPSHGKSGGKGGGGGGKGNKNGH-----DHGHGIGG 392
Query: 274 G-GGNAG 279
GN G
Sbjct: 393 NMNGNGG 413
>AV773507
Length = 496
Score = 47.0 bits (110), Expect = 4e-06
Identities = 28/64 (43%), Positives = 29/64 (44%)
Frame = +2
Query: 187 GGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGPSSGG 246
G GGG Y+ GG RG G G G CF CG GH ARDC A G G
Sbjct: 275 GYRGGG--YSSGG---------RGSYGAGDRVGQDDCFECGRPGHRARDCPLAGGGGGRG 421
Query: 247 VGGG 250
GGG
Sbjct: 422 RGGG 433
Score = 45.8 bits (107), Expect = 9e-06
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Frame = +2
Query: 91 GWRGGERRNGGGGGGGGGG------CYNCGDTGHLARDCHRSNNNGGGGGGAACYNC--- 141
G+RGG +GG G G G C+ CG GH ARDC + GG G G +
Sbjct: 275 GYRGGGYSSGGRGSYGAGDRVGQDDCFECGRPGHRARDCPLAGGGGGRGRGGGSLSSRPR 454
Query: 142 --GDAGH 146
G GH
Sbjct: 455 YGGSGGH 475
Score = 43.9 bits (102), Expect = 3e-05
Identities = 29/81 (35%), Positives = 35/81 (42%), Gaps = 7/81 (8%)
Frame = +2
Query: 143 DAGHLARDCNRSNNNSGGGGAG-------CYNCGDTGHLARDCNRSNNSGGGGGGGGACY 195
DA R S+ G GAG C+ CG GH ARDC + GG G GGG+
Sbjct: 263 DADQGYRGGGYSSGGRGSYGAGDRVGQDDCFECGRPGHRARDCPLAGGGGGRGRGGGS-- 436
Query: 196 TCGGFGHLARDCMRGGNGGGG 216
L+ GG+GG G
Sbjct: 437 -------LSSRPRYGGSGGHG 478
Score = 42.4 bits (98), Expect = 1e-04
Identities = 26/58 (44%), Positives = 27/58 (45%), Gaps = 11/58 (18%)
Frame = +2
Query: 184 SGGGGGGGGA--------CYTCGGFGHLARDCMRGGNGGGGGPGSASCF---RCGGIG 230
S GG G GA C+ CG GH ARDC G GGG G G S R GG G
Sbjct: 296 SSGGRGSYGAGDRVGQDDCFECGRPGHRARDCPLAGGGGGRGRGGGSLSSRPRYGGSG 469
Score = 42.0 bits (97), Expect = 1e-04
Identities = 17/35 (48%), Positives = 21/35 (59%)
Frame = +2
Query: 267 GGVAVSGGGGNAGRNTCFNCGKPGHFARECIEASG 301
GG G G G++ CF CG+PGH AR+C A G
Sbjct: 302 GGRGSYGAGDRVGQDDCFECGRPGHRARDCPLAGG 406
Score = 41.2 bits (95), Expect = 2e-04
Identities = 31/101 (30%), Positives = 36/101 (34%)
Frame = +2
Query: 90 GGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLAR 149
GG + GGG GG G Y GD G C+ CG GH AR
Sbjct: 254 GGDDADQGYRGGGYSSGGRGSYGAGDRV----------------GQDDCFECGRPGHRAR 385
Query: 150 DCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGG 190
DC + G G G G L+ +R G GG G
Sbjct: 386 DCPLAGGGGGRGRGG-------GSLS---SRPRYGGSGGHG 478
Score = 40.4 bits (93), Expect = 4e-04
Identities = 23/49 (46%), Positives = 25/49 (50%), Gaps = 9/49 (18%)
Frame = +2
Query: 241 GPSSGGVGGGG---------CFRCGEVGHLARDCDGGVAVSGGGGNAGR 280
G SSGG G G CF CG GH ARDC ++GGGG GR
Sbjct: 290 GYSSGGRGSYGAGDRVGQDDCFECGRPGHRARDC----PLAGGGGGRGR 424
>TC19911 weakly similar to PIR|A44805|A44805 eggshell protein precursor -
fluke (Schistosoma haematobium) {Schistosoma
haematobium;} , partial (24%)
Length = 350
Score = 46.2 bits (108), Expect = 7e-06
Identities = 40/119 (33%), Positives = 48/119 (39%), Gaps = 1/119 (0%)
Frame = +1
Query: 100 GGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSG 159
G GGG G + D H R + + GGG Y+ D NRS +G
Sbjct: 34 GHSGGGSHGNDHRHSDNEHGGRRSETTGHGLSGGG----YD---------DDNRSGGRTG 174
Query: 160 GG-GAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGG 217
GG G G ++ G G RS GGG G GG GG+G D R G G G G
Sbjct: 175 GGYGDGGHSAGGYGDHG---GRSGGGGGGYGDGGLSSGSGGYG----DGGRSGVGYGDG 330
Score = 45.8 bits (107), Expect = 9e-06
Identities = 43/128 (33%), Positives = 54/128 (41%), Gaps = 1/128 (0%)
Frame = +1
Query: 124 HRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNN 183
H+ N+ G G + G H D S+N GG + G +G D NRS
Sbjct: 4 HQFENSAGNTG-----HSGGGSH-GNDHRHSDNEHGGRRSETTGHGLSGGGYDDDNRSGG 165
Query: 184 SGGGGGGGGACYTCGGFG-HLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDCATAKGP 242
GGG G G ++ GG+G H R GG GGG G G S GG G R + G
Sbjct: 166 RTGGGYGDGG-HSAGGYGDHGGRS---GGGGGGYGDGGLSS-GSGGYGDGGR---SGVGY 321
Query: 243 SSGGVGGG 250
G + GG
Sbjct: 322 GDGXLSGG 345
Score = 32.7 bits (73), Expect = 0.077
Identities = 24/72 (33%), Positives = 30/72 (41%)
Frame = +1
Query: 90 GGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLAR 149
GG+ R G GGG G G ++ G G D + GGGG G + G G+
Sbjct: 133 GGYDDDNRSGGRTGGGYGDGGHSAGGYG----DHGGRSGGGGGGYGDGGLSSGSGGY--G 294
Query: 150 DCNRSNNNSGGG 161
D RS G G
Sbjct: 295 DGGRSGVGYGDG 330
Score = 29.3 bits (64), Expect = 0.85
Identities = 20/59 (33%), Positives = 24/59 (39%), Gaps = 2/59 (3%)
Frame = +1
Query: 90 GGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCG--DAGH 146
GG+ R+GGGGGG G G + G G+ G GG Y G GH
Sbjct: 205 GGYGDHGGRSGGGGGGYGDGGLSSGSGGY-----------GDGGRSGVGYGDGXLSGGH 348
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 46.2 bits (108), Expect = 7e-06
Identities = 45/155 (29%), Positives = 57/155 (36%), Gaps = 9/155 (5%)
Frame = +2
Query: 54 FSIATGDNDKTKAVDVTGPNGAALQP---TRKDSAPRGFGGWRGGERRNGGGGGGGGGGC 110
F T ++++ + G NG + T ++ RG GG GGGGGG GGG
Sbjct: 485 FGFVTFASEQSMKDAIEGMNGQDIDGRNVTVNEAQARGRGG--------GGGGGGYGGG- 637
Query: 111 YNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGD 170
R GGGGG + SGGGG G G
Sbjct: 638 -------------RREGGYGGGGG--------------------SRYSGGGGGGYGGSGG 718
Query: 171 TGHLARDCNRSNNSGGGG------GGGGACYTCGG 199
G+ R GGGG GGGG+ Y+ GG
Sbjct: 719 GGYGGR-----REGGGGGYGGSREGGGGSRYSSGG 808
Score = 38.5 bits (88), Expect = 0.001
Identities = 34/97 (35%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Frame = +2
Query: 180 RSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGG-GGPGSASCFRCGGIGHMARDCAT 238
R GGGGGG G GG+G GG GGG GG G GG G
Sbjct: 593 RGRGGGGGGGGYGGGRREGGYGGGGGSRYSGGGGGGYGGSGG------GGYG-------- 730
Query: 239 AKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSGGG 275
G GG GG G +R+ GG S GG
Sbjct: 731 --GRREGGGGGYGG---------SREGGGGSRYSSGG 808
>AV420911
Length = 418
Score = 45.1 bits (105), Expect = 1e-05
Identities = 21/46 (45%), Positives = 23/46 (49%), Gaps = 10/46 (21%)
Frame = +2
Query: 88 GFGGWRGGERRNGGGGGGGGGG----------CYNCGDTGHLARDC 123
G GWR N GGGGG GG CY CG+ GH AR+C
Sbjct: 278 GKNGWRVELSHNSKGGGGGRGGGRGRGGEDLKCYECGEPGHFAREC 415
Score = 40.8 bits (94), Expect = 3e-04
Identities = 17/31 (54%), Positives = 20/31 (63%), Gaps = 1/31 (3%)
Frame = +2
Query: 267 GGVAVSGGGGNAGRNT-CFNCGKPGHFAREC 296
GG GG G G + C+ CG+PGHFAREC
Sbjct: 323 GGGGRGGGRGRGGEDLKCYECGEPGHFAREC 415
Score = 38.1 bits (87), Expect = 0.002
Identities = 22/56 (39%), Positives = 25/56 (44%)
Frame = +2
Query: 181 SNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGGGGPGSASCFRCGGIGHMARDC 236
S+NS GGGGG G GG G GG C+ CG GH AR+C
Sbjct: 305 SHNSKGGGGGRG-----------------GGRGRGGE--DLKCYECGEPGHFAREC 415
Score = 36.6 bits (83), Expect = 0.005
Identities = 18/53 (33%), Positives = 22/53 (40%)
Frame = +2
Query: 126 SNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDC 178
S+N+ GGGGG GG CY CG+ GH AR+C
Sbjct: 305 SHNSKGGGGGRG----------------GGRGRGGEDLKCYECGEPGHFAREC 415
Score = 36.2 bits (82), Expect = 0.007
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Frame = +2
Query: 177 DCNRSNNSGGGGGGGG--------ACYTCGGFGHLARDC 207
+ + ++ GGGG GGG CY CG GH AR+C
Sbjct: 299 ELSHNSKGGGGGRGGGRGRGGEDLKCYECGEPGHFAREC 415
Score = 34.3 bits (77), Expect = 0.026
Identities = 15/29 (51%), Positives = 17/29 (57%), Gaps = 4/29 (13%)
Frame = +2
Query: 241 GPSSGGVGGGG----CFRCGEVGHLARDC 265
G GG G GG C+ CGE GH AR+C
Sbjct: 329 GGRGGGRGRGGEDLKCYECGEPGHFAREC 415
>TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein {Danio
rerio;} , partial (5%)
Length = 678
Score = 44.7 bits (104), Expect = 2e-05
Identities = 63/213 (29%), Positives = 72/213 (33%), Gaps = 33/213 (15%)
Frame = -2
Query: 101 GGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSNNNSGG 160
GG GGGGGG G G + D ++ G G G G +A GG
Sbjct: 674 GGVGGGGGGGDRVGVGGGASSDVSGVDSRGSGVLSIEDIGRGGGGMVA------TPYLGG 513
Query: 161 GGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLA-RDCMRGGNGG----- 214
G G CG G G G C GG G L+ D +GG GG
Sbjct: 512 GDGG---CGGEGSGVWVIVVRELGGDGVVSDVRCVEGGGSGALSVADMSKGGEGGMVVTP 342
Query: 215 --GGGPGSASCFRCGGIGHMARDCAT-------AKGPSSGGV-----GGGGCFRCGEVGH 260
GGG G CGG G A+ A + GGV GGGGC GE G
Sbjct: 341 YFGGGGGG-----CGGDGREQGKEASPDIIALPAITEAGGGVVGGRDGGGGCGGGGE-GE 180
Query: 261 LARDCD-------------GGVAVSGGGGNAGR 280
R+ GGGG GR
Sbjct: 179 QGRETSPTDLETFEIIALPAIKGAEGGGGGGGR 81
Score = 34.7 bits (78), Expect = 0.020
Identities = 52/209 (24%), Positives = 67/209 (31%), Gaps = 55/209 (26%)
Frame = -2
Query: 68 DVTGPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGG------------------ 109
DV+G + + RG GG GG GG GG G
Sbjct: 611 DVSGVDSRGSGVLSIEDIGRGGGGMVATPYLGGGDGGCGGEGSGVWVIVVRELGGDGVVS 432
Query: 110 ---CYNCGDTGHLARDCHRSNNNGG-------GGGGAACYNCGDAGHLARDCNR------ 153
C G +G L+ GG GGGG C GD ++ +
Sbjct: 431 DVRCVEGGGSGALSVADMSKGGEGGMVVTPYFGGGGGGCG--GDGREQGKEASPDIIALP 258
Query: 154 SNNNSGGG-------GAGCYNCGDTGHLARDCNRSN--------------NSGGGGGGGG 192
+ +GGG G GC G+ G R+ + ++ GGGGGGG
Sbjct: 257 AITEAGGGVVGGRDGGGGCGGGGE-GEQGRETSPTDLETFEIIALPAIKGAEGGGGGGGR 81
Query: 193 ACYTCGGFGHLARDCMRGGNGGGGGPGSA 221
A GG GGG G SA
Sbjct: 80 ALSDFGGV-----------EGGGSGALSA 27
Score = 31.2 bits (69), Expect = 0.22
Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Frame = -2
Query: 90 GGWRGGERRNGGGGGGGGGGCYNCGDTGH------------LARDCHRSNNNGGGGGGAA 137
GG G R GGG GGGG G+ G +A + GGGGGG A
Sbjct: 242 GGGVVGGRDGGGGCGGGGE-----GEQGRETSPTDLETFEIIALPAIKGAEGGGGGGGRA 78
Query: 138 CYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTG 172
+ G GGG+G + D G
Sbjct: 77 LSDFGGV--------------EGGGSGALSAEDIG 15
>TC8694 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation
factor 3 subunit 8 (eIF3 p110) (eIF3c), partial (23%)
Length = 986
Score = 43.1 bits (100), Expect = 6e-05
Identities = 28/86 (32%), Positives = 38/86 (43%)
Frame = +2
Query: 130 GGGGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGG 189
GGGGG + + R+ SGGG +N G+ +RD R+ GGGGG
Sbjct: 488 GGGGGAGGRWQDLSLSQPRQGSGRAGYGSGGGRPFAFNQAAGGY-SRD--RTGRGGGGGG 658
Query: 190 GGGACYTCGGFGHLARDCMRGGNGGG 215
G + Y G H +RG +G G
Sbjct: 659 GYQSQYGGSGRAHQGGSALRGHHGDG 736
Score = 35.0 bits (79), Expect = 0.016
Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 19/126 (15%)
Frame = +2
Query: 53 EFSIATGDNDKTKAVDVTGPNGAALQPTRKD-----SAPRGFGGWRGGE----------- 96
+ SI N++ + G G L P R+D +A G GG GG
Sbjct: 371 KLSIFAESNERAAEARIGG-GGLDLPPRRRDGQDYAAAAAGGGGGAGGRWQDLSLSQPRQ 547
Query: 97 --RRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGG-AACYNCGDAGHLARDCNR 153
R G G GGG +N G+ +RD R+ GGGGGG + Y H R
Sbjct: 548 GSGRAGYGSGGGRPFAFNQAAGGY-SRD--RTGRGGGGGGGYQSQYGGSGRAHQGGSALR 718
Query: 154 SNNNSG 159
++ G
Sbjct: 719 GHHGDG 736
Score = 31.2 bits (69), Expect = 0.22
Identities = 28/86 (32%), Positives = 33/86 (37%), Gaps = 1/86 (1%)
Frame = +2
Query: 132 GGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGG 191
GGGG D RD + GGG G L++ S +G G GGG
Sbjct: 422 GGGGL------DLPPRRRDGQDYAAAAAGGGGGAGGRWQDLSLSQPRQGSGRAGYGSGGG 583
Query: 192 GACYTCGGFGHLARDCM-RGGNGGGG 216
G +RD RGG GGGG
Sbjct: 584 RPFAFNQAAGGYSRDRTGRGGGGGGG 661
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 43.1 bits (100), Expect = 6e-05
Identities = 45/149 (30%), Positives = 51/149 (34%)
Frame = -1
Query: 72 PNGAALQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGG 131
P AA P P+G G+ G + GGG GGGGG GG
Sbjct: 395 PQQAAAAPGGGGPGPQGGRGYGGPPQGGRGGGYGGGGG----------------PGYGGG 264
Query: 132 GGGGAACYNCGDAGHLARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGG 191
G GG G S GG G Y+ G G+ GGGGG G
Sbjct: 263 GRGGHGVPQQQYGGPPEYQGRGRGGPSQQGGRGGYSGGGGGY-----------GGGGGRG 117
Query: 192 GACYTCGGFGHLARDCMRGGNGGGGGPGS 220
G GG G RG + GGP S
Sbjct: 116 G-----GGMG-----SGRGVSPSHGGPPS 60
Score = 37.0 bits (84), Expect = 0.004
Identities = 43/151 (28%), Positives = 48/151 (31%)
Frame = -1
Query: 96 ERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGGGGGGAACYNCGDAGHLARDCNRSN 155
+RR G GG G + T A ++ GGGG G G R
Sbjct: 476 KRRTDGPSGGEGSEGQHSHSTERSAPPPQQAAAAPGGGGPGPQGGRGYGG--PPQGGRGG 303
Query: 156 NNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMRGGNGGG 215
GGGG G G GH G G G GG G G +GGG
Sbjct: 302 GYGGGGGPGYGGGGRGGHGVPQQQYGGPPEYQGRGRGGPSQQGGRG--------GYSGGG 147
Query: 216 GGPGSASCFRCGGIGHMARDCATAKGPSSGG 246
GG G GG G PS GG
Sbjct: 146 GGYGGG-----GGRGGGGMGSGRGVSPSHGG 69
Score = 30.8 bits (68), Expect = 0.29
Identities = 22/67 (32%), Positives = 26/67 (37%), Gaps = 1/67 (1%)
Frame = -1
Query: 71 GPNGAALQPTRKDSAPRGFGGWRGGERRNGGGGG-GGGGGCYNCGDTGHLARDCHRSNNN 129
G G + + P G RGG + GG GG GGGG Y G
Sbjct: 263 GRGGHGVPQQQYGGPPEYQGRGRGGPSQQGGRGGYSGGGGGYGGG------------GGR 120
Query: 130 GGGGGGA 136
GGGG G+
Sbjct: 119 GGGGMGS 99
Score = 26.2 bits (56), Expect = 7.2
Identities = 23/66 (34%), Positives = 24/66 (35%)
Frame = -1
Query: 214 GGGGPGSASCFRCGGIGHMARDCATAKGPSSGGVGGGGCFRCGEVGHLARDCDGGVAVSG 273
GGGGPG GG G+ GP GG GGG GG G
Sbjct: 371 GGGGPGPQ-----GGRGY--------GGPPQGGRGGG-------------YGGGGGPGYG 270
Query: 274 GGGNAG 279
GGG G
Sbjct: 269 GGGRGG 252
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 42.4 bits (98), Expect = 1e-04
Identities = 21/45 (46%), Positives = 23/45 (50%)
Frame = -3
Query: 87 RGFGGWRGGERRNGGGGGGGGGGCYNCGDTGHLARDCHRSNNNGG 131
RG WR G R+GGGGGGGGGG + G G R GG
Sbjct: 320 RGRSRWR*GRGRSGGGGGGGGGGRRSRGSGGGGTNGGRRGRGKGG 186
Score = 32.0 bits (71), Expect = 0.13
Identities = 23/53 (43%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Frame = -3
Query: 180 RSNNSGGGGGGGGACYTCGGFGHLARDCMRG-GNGG---GGGPGSASCFRCGG 228
R + GGGGGGGG + G G RG G GG G G GS R GG
Sbjct: 293 RGRSGGGGGGGGGGRRSRGSGGGGTNGGRRGRGKGGKRVGRG*GSRE*CRQGG 135
Score = 30.8 bits (68), Expect = 0.29
Identities = 34/116 (29%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Frame = -1
Query: 86 PRGFGGWRGGERRNGGGGGGGG-----GGCYNCGDTGHLARDCHRSNNNGGGGGGAACYN 140
P G GGE GGG G GG G+ G + + + G G G
Sbjct: 349 PFGVEEGGGGEAEVGGGEGEGGVAEEVAAAAEVGEVGGVEEVGPTAADEGEGREGRGW-- 176
Query: 141 CGDAGH-LARDCNRSNNNSGGGGAGCYNCGDTGHLARDCNRSNNSGGGGGGGGACY 195
DAG + D R N GG + GD GGGGGGGG +
Sbjct: 175 --DAGEEVENDVVREGGNGGGRLLRWF--GD--------------GGGGGGGGVVW 62
Score = 30.8 bits (68), Expect = 0.29
Identities = 26/87 (29%), Positives = 32/87 (35%), Gaps = 18/87 (20%)
Frame = -1
Query: 48 EGDLVEFSIATGDNDKTKAVDVTGPNGAALQPTRKDSAPRGFGGWRGGER------RNGG 101
EG + E A + + V+ GP A + R GW GE R GG
Sbjct: 292 EGGVAEEVAAAAEVGEVGGVEEVGPTAA------DEGEGREGRGWDAGEEVENDVVREGG 131
Query: 102 ------------GGGGGGGGCYNCGDT 116
GGGGGGGG G+T
Sbjct: 130 NGGGRLLRWFGDGGGGGGGGVVWIGET 50
Score = 29.6 bits (65), Expect = 0.65
Identities = 25/78 (32%), Positives = 32/78 (40%), Gaps = 3/78 (3%)
Frame = -3
Query: 176 RDCNRSNNSGGGGGGGGACYTCGGFGHLARDCMR---GGNGGGGGPGSASCFRCGGIGHM 232
R C+R GG G G+ + GG+ R R G +GGGGG G GG
Sbjct: 383 RRCSR------GGRGRGSIWRRGGWRRRGRSRWR*GRGRSGGGGGGGG------GG---- 252
Query: 233 ARDCATAKGPSSGGVGGG 250
++G GG GG
Sbjct: 251 ----RRSRGSGGGGTNGG 210
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.144 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,738,954
Number of Sequences: 28460
Number of extensions: 139681
Number of successful extensions: 7075
Number of sequences better than 10.0: 512
Number of HSP's better than 10.0 without gapping: 1925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4703
length of query: 301
length of database: 4,897,600
effective HSP length: 90
effective length of query: 211
effective length of database: 2,336,200
effective search space: 492938200
effective search space used: 492938200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0197.11