TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0192.15
         (1070 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV427921                                                              100  9e-22
BP063694                                                               88  6e-18
AU088980                                                               63  3e-10
BP033602                                                               54  1e-07
AV766088                                                               54  2e-07
BP052632                                                               51  1e-06
AV410378                                                               47  2e-05
TC9278                                                                 42  7e-04
BP058111                                                               38  0.010
BP066538                                                               32  0.013
BP078157                                                               36  0.028
AU089582                                                               34  0.11
BP063902                                                               34  0.11
AV769820                                                               32  0.53
BP041939                                                               32  0.69
TC17878 similar to GB|AAK91488.1|15215889|AY050475 AT5g02770/F9G...    31  0.90
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti...    30  1.5
AV778755                                                               30  2.6
BP054351                                                               29  4.5

>AV427921 
          Length = 284

 Score =  100 bits (250), Expect = 9e-22
 Identities = 51/95 (53%), Positives = 63/95 (65%)
 Frame = +1

Query: 374 RQLTVAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAV 433
           RQ T AY PQQNGVSERK RTI+ M RS+L   G+  +F   EAV  +++ILNR PT  V
Sbjct: 1   RQ*TAAYTPQQNGVSERKNRTILNMVRSLLTMSGLPKSFL-PEAVMWSLHILNRSPTLVV 177

Query: 434 QNKTPIEAWCGKKPSTKHLRVFGSICYTHVPDVKR 468
           QN  P EAW G++P+  H R+   + Y HVPD KR
Sbjct: 178 QNMMPEEAWSGRQPAVDHFRISRCLAYAHVPDQKR 282


>BP063694 
          Length = 511

 Score = 88.2 bits (217), Expect = 6e-18
 Identities = 46/119 (38%), Positives = 66/119 (54%)
 Frame = -2

Query: 224 LWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEACERCLLGMQRRVSFSTCKEWRAKDV 283
           LWH R GH N  ++K L++   + D+ S+      C  C +   +R+ F    + RA  V
Sbjct: 360 LWHSRLGHVNFDIIKQLHKHGCL-DVSSILPKPICCTSCQMAKSKRLVFHDNNK-RASAV 187

Query: 284 LELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQ 342
           L+LIH D+ GP   +S D   YF++F DDFSR TW Y LK KS+   V  +FK  +E +
Sbjct: 186 LDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFMENR 10


>AU088980 
          Length = 360

 Score = 62.8 bits (151), Expect = 3e-10
 Identities = 33/113 (29%), Positives = 59/113 (52%)
 Frame = +2

Query: 385 NGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCG 444
           N + ERK R I+ + R+++    +    W   AV  A Y++N  P+  ++ + P +    
Sbjct: 2   NSIVERKHRHILNVTRALMFHSYLPKNLW-TFAVKHAAYLINXLPSPLLKGQCPYQFLNN 178

Query: 445 KKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQT 497
             P+   L+VFG++CY+        KL+ +  + +FLG+ T + GY V +L T
Sbjct: 179 DSPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMDLPT 337


>BP033602 
          Length = 533

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +3

Query: 220 DDSWLWHRRFGHFNTQVLKLLYQKNMMRDL-PSLKESNEACERCLLGMQRRVSFSTCKEW 278
           D   LWH R GH N Q L+ L+      DL  ++  S+  CE C+L   +R  + + + +
Sbjct: 264 DQIMLWHNRLGHPNFQYLRHLFP-----DLFKNVNCSSLECESCVLAKNQRAPYYS-QPY 425

Query: 279 RAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDD 312
            A     LIH+DV GP + ++    R+F+ F DD
Sbjct: 426 HASRPFYLIHSDVWGPSKITTQFGKRWFVTFIDD 527


>AV766088 
          Length = 501

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 31/107 (28%), Positives = 54/107 (49%), Gaps = 1/107 (0%)
 Frame = -3

Query: 224 LWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEACERCLLGMQRRVSFSTCKEWRAKDV 283
           LWH R GH ++  L+ L     +     L   +  CE C+ G   R+ F +         
Sbjct: 307 LWHSRLGHPSSSALRYLRSNKFISY--ELLNYSPVCESCVFGKHVRLPFVSSNNVTVMP- 137

Query: 284 LELIHTDV-CGPMRTSSHDNNRYFILFTDDFSRMTWVYFLKAKSEVF 329
            +++H+D+   P+ +S+   +R+++LF DDF+   W + L  KS+VF
Sbjct: 136 FDILHSDLWTSPVLSSA--GHRFYVLFLDDFTDFLWTFPLSNKSQVF 2


>BP052632 
          Length = 489

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
 Frame = -3

Query: 436 KTPIEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNL 495
           KTP E W G++P+  +   FG   +    +    K ++K  + I LGYS+ SK Y V+N 
Sbjct: 487 KTPYELWRGRRPTVSYFHPFGCK*FILNTNDNIGKFDNKFDKRILLGYSSNSKAYIVFNS 308

Query: 496 QTKKLTISRDVEVDG---NASWNWDEEKVEKNILIPTQRPQEEVEEEAENPGEP--TSPP 550
           +T+ +  S +V+ D     A++  +++ +  ++        ++ EE   N G+P  TS  
Sbjct: 307 RTQVVEESINVKFDD*SIEATYRLEKDFLNLDL-------SDQDEEVPTNEGQPSETSHE 149

Query: 551 QQQEQQQDLSP 561
           +   Q Q  +P
Sbjct: 148 EPSTQPQTTNP 116


>AV410378 
          Length = 358

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 23/60 (38%), Positives = 35/60 (58%)
 Frame = +1

Query: 564 TPRRVRFLVDVYETCNLAILEPESFEAASKQEVWVKAMEEEIKMIEKNNTWELVDCPHGK 623
           TP    F++++       + EP  +  A K E W KAM++EI+ +E+N+TW LVD P  K
Sbjct: 193 TPSYRAFIMNI-----TTVSEPTRYSEAVKHECWRKAMDQEIEALERNHTWILVDKPPDK 357


>TC9278 
          Length = 743

 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 23/47 (48%), Positives = 29/47 (60%)
 Frame = +1

Query: 587 SFEAASKQEVWVKAMEEEIKMIEKNNTWELVDCPHGKDIIGVKWVYK 633
           +FEA + Q  W K M  EI +IEKN T EL D    + +I VKWV+K
Sbjct: 574 TFEALNGQH-WRKVMAGEIHVIEKNET*ELTDLLGDQRLISVKWVHK 711


>BP058111 
          Length = 570

 Score = 37.7 bits (86), Expect = 0.010
 Identities = 22/69 (31%), Positives = 37/69 (52%)
 Frame = -1

Query: 221 DSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEACERCLLGMQRRVSFSTCKEWRA 280
           D  LWH R GH +++ L +L QKN      + K+    C+ C +  Q+++SF       +
Sbjct: 195 DCNLWHLRLGHTSSKKLAIL-QKNF--PFITCKKITSPCDTCHMAKQKKLSFPN-SVTLS 28

Query: 281 KDVLELIHT 289
            ++ +LIHT
Sbjct: 27  SEIFDLIHT 1


>BP066538 
          Length = 396

 Score = 32.0 bits (71), Expect(2) = 0.013
 Identities = 16/31 (51%), Positives = 20/31 (63%)
 Frame = -3

Query: 127 VESKGKGTVMVET*KGTRLISDVLLVPNLKE 157
           V+ K K  V VET  GT+ I DVLLVP + +
Sbjct: 145 VDVKAK*VVAVETSSGTKYIPDVLLVPEINQ 53



 Score = 24.3 bits (51), Expect(2) = 0.013
 Identities = 10/22 (45%), Positives = 13/22 (58%)
 Frame = -1

Query: 98  SNHMAKDESIFKNIDDSVKVKV 119
           S+HM  DE +FK +D     KV
Sbjct: 234 SHHMTYDEKLFKELDQPFVSKV 169


>BP078157 
          Length = 395

 Score = 36.2 bits (82), Expect = 0.028
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -2

Query: 224 LWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEACERCLLGMQRRVSF 272
           LWH R GH + +VLK++        LP     N  C  C L   RR+SF
Sbjct: 148 LWHSRLGHLSDKVLKVVSNLVPFTVLPDFHSHN--CNVCPLSKMRRLSF 8


>AU089582 
          Length = 383

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 17/54 (31%), Positives = 31/54 (56%)
 Frame = +2

Query: 352 SDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSMLKE 405
           SDRG ++TS  +  F    G   +++ A+ PQ +G SER  + + +M R+ + +
Sbjct: 80  SDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQSERTIQILEDMLRACVXD 241


>BP063902 
          Length = 494

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 18/53 (33%), Positives = 27/53 (49%)
 Frame = -3

Query: 222 SWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEACERCLLGMQRRVSFST 274
           S +WH R GH  +  L  L    ++   PS   S+  C+ C+LG   R+ FS+
Sbjct: 189 SSVWHHRLGHPASSALNHLRNNKLIFCEPS--RSSSVCDSCVLGKHVRLPFSS 37


>AV769820 
          Length = 316

 Score = 32.0 bits (71), Expect = 0.53
 Identities = 13/31 (41%), Positives = 17/31 (53%)
 Frame = -2

Query: 43  CNYCKKFGHMEKYCYSKNRHQANLAEEQEQD 73
           CN C K GH+  YC+ +   QAN  +  E D
Sbjct: 261 CNVCGKKGHLSIYCWRRCEKQANERKAVEDD 169


>BP041939 
          Length = 392

 Score = 31.6 bits (70), Expect = 0.69
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +1

Query: 470 KLEDKNVRGIFLGYSTKSKGYRVYNLQTKKLTIS 503
           KL+ K+++ +FLGYS   KGYRV +LQ    T+S
Sbjct: 40  KLDPKSLKCVFLGYSRT*KGYRV-SLQILVATLS 138


>TC17878 similar to GB|AAK91488.1|15215889|AY050475 AT5g02770/F9G14_80
           {Arabidopsis thaliana;}, partial (17%)
          Length = 465

 Score = 31.2 bits (69), Expect = 0.90
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +2

Query: 524 NILIPTQRPQE---EVEEEAENPGEPTSPPQQQEQQQDLSPESTP 565
           N   PTQ       E EEEAE P  P S PQ Q       PE+ P
Sbjct: 80  NDTTPTQENPNKTLEPEEEAEEPTPPQSEPQSQPDPIAAEPETEP 214


>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
          Length = 555

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 22/67 (32%), Positives = 30/67 (43%), Gaps = 14/67 (20%)
 Frame = +2

Query: 4   RRESSRNFSKNSQDKN-----------PPCSIC*RLG---HAEADCRYRDKPQCNYCKKF 49
           RR+S R FS+++  KN           P  +IC   G   H  ++C    K  C  CK+ 
Sbjct: 305 RRDSRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECT--TKSLCWNCKEP 478

Query: 50  GHMEKYC 56
           GHM   C
Sbjct: 479 GHMASSC 499


>AV778755 
          Length = 537

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +1

Query: 950  R*HEKHFRLCFLPWIGNIFLDV-*EASYSCTINI*S*VCGSC*SNK----SSYMASKNTR 1004
            +*HE++ R+CFL  IGN    + *E                 * N+    S + A++NT 
Sbjct: 250  K*HEENLRICFLSGIGNSLSHLR*ELQ---------------*HNQQQK*SEWRATENT* 384

Query: 1005 RYGRKTR*VYYTQL 1018
            RY RKT   YY  L
Sbjct: 385  RYERKTGCAYYNLL 426


>BP054351 
          Length = 431

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
 Frame = -1

Query: 182 YDKHDKRVEIAQVKMQKSNISFPLNFKYVA-----NIAMKAQVDDSWLWHRRFGHFNTQV 236
           YD+   ++ IA  KM+     F   F+  A      ++  +  D   LWH R GH N Q 
Sbjct: 248 YDRISGKM-IASAKMKDGLYYFEDTFRNKAAQGLCGMSCTSVRDQIMLWHNRLGHPNFQ- 75

Query: 237 LKLLYQKNMMRDL-PSLKESNEACERCL 263
               Y +++  DL  ++  S+  CE C+
Sbjct: 74  ----YLRHLFPDLFKNVNCSSLECESCV 3


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.331    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,143,602
Number of Sequences: 28460
Number of extensions: 271796
Number of successful extensions: 1682
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of query: 1070
length of database: 4,897,600
effective HSP length: 100
effective length of query: 970
effective length of database: 2,051,600
effective search space: 1990052000
effective search space used: 1990052000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)