TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0162a.12
         (34 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10127 weakly similar to GB|BAC16475.1|23237901|AP004671 10 kDa...    67  8e-13
TC11077 similar to UP|CH10_ARATH (P34893) 10 kDa chaperonin (Pro...    52  3e-08
TC14422 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor (1...    32  0.029
AV764968                                                               31  0.066
TC8392 similar to UP|Q8LK52 (Q8LK52) Cp10-like protein, partial ...    31  0.066
TC13461 similar to PIR|A86383|A86383 76.4K protein kinase homolo...    25  3.6

>TC10127 weakly similar to GB|BAC16475.1|23237901|AP004671 10 kDa chaperonin
           {Oryza sativa (japonica cultivar-group);} , complete
          Length = 618

 Score = 67.0 bits (162), Expect = 8e-13
 Identities = 32/33 (96%), Positives = 32/33 (96%)
 Frame = +2

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           GDQVLLP YGGSQIKLDDKEFLLFRDEDILGIL
Sbjct: 257 GDQVLLPEYGGSQIKLDDKEFLLFRDEDILGIL 355


>TC11077 similar to UP|CH10_ARATH (P34893) 10 kDa chaperonin (Protein CPN10)
           (Protein groES), partial (98%)
          Length = 583

 Score = 52.0 bits (123), Expect = 3e-08
 Identities = 22/33 (66%), Positives = 29/33 (87%)
 Frame = +3

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           GD VLLP YGG+++KLD+KE+ L+RD+DILG L
Sbjct: 261 GDTVLLPEYGGTEVKLDNKEYHLYRDDDILGTL 359


>TC14422 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor (10 kDa
           chaperonin) (Protein Cpn10) (groES protein), partial
           (93%)
          Length = 1077

 Score = 32.0 bits (71), Expect = 0.029
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           G QV+   Y G++++ +  + L+ +D+DI+GIL
Sbjct: 482 GAQVVYSKYAGTEVEFNGTKHLILKDDDIVGIL 580


>AV764968 
          Length = 300

 Score = 30.8 bits (68), Expect = 0.066
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = -2

Query: 9   YGGSQIKLDDKEFLLFRDEDILGIL 33
           YGG+++KLD+K++ L+++ D LG L
Sbjct: 299 YGGTKMKLDNKKYHLYKNVDKLGAL 225


>TC8392 similar to UP|Q8LK52 (Q8LK52) Cp10-like protein, partial (81%)
          Length = 1014

 Score = 30.8 bits (68), Expect = 0.066
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +1

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           G +V+   Y G++++ +  + L+ +D+DI+GIL
Sbjct: 469 GAKVVYSKYAGTEVEFNGSKHLILKDDDIVGIL 567


>TC13461 similar to PIR|A86383|A86383 76.4K protein kinase homolog F4F7.29 -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (5%)
          Length = 623

 Score = 25.0 bits (53), Expect = 3.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 4   VLLPAYGGSQIKLDDKEFLLFRDEDIL 30
           ++ P  GG +IK+D+K      DEDIL
Sbjct: 535 LIKPRQGGLKIKIDNKSKKN*EDEDIL 455


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.154    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,819
Number of Sequences: 28460
Number of extensions: 2283
Number of successful extensions: 11
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 34
length of database: 4,897,600
effective HSP length: 10
effective length of query: 24
effective length of database: 4,613,000
effective search space: 110712000
effective search space used: 110712000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)