BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0152.2
(603 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV421890 151 3e-37
BP085186 75 2e-14
BP069078 46 2e-05
BP057603 45 3e-05
TC12611 weakly similar to UP|BAC83787 (BAC83787) Tetratricopepti... 34 0.077
TC12711 similar to UP|Q84Y18 (Q84Y18) CAX-interacting protein 4,... 33 0.10
TC19330 similar to UP|Q96258 (Q96258) AR791, partial (11%) 32 0.22
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 32 0.22
TC10152 weakly similar to UP|Q40869 (Q40869) Late embryogenesis ... 32 0.29
AV416122 32 0.29
BP043430 32 0.38
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 32 0.38
TC15626 31 0.50
TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associ... 31 0.50
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 31 0.65
BP076862 31 0.65
TC15835 30 0.85
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%) 30 1.1
TC14866 similar to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ... 30 1.5
TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) prec... 30 1.5
>AV421890
Length = 366
Score = 151 bits (382), Expect = 3e-37
Identities = 81/124 (65%), Positives = 99/124 (79%)
Frame = +1
Query: 298 HSGTESNRPQKKKRKNETPESAKGKDSSQPSMEKFMVKGNPQHMTLKAGSSSAPPPSWKS 357
HSGTE++ P K+ RKN+ E+ KG S+Q SMEKFMVK + M K SSSAPP +WK+
Sbjct: 4 HSGTETDPPAKRNRKNKVVETPKG--STQYSMEKFMVKTSSD-MGNKQVSSSAPPTTWKN 174
Query: 358 LLKEFEELTSEEVTSLWDSKIDFNSLVETNLVFEADREKVKKIGLKEACQAIMTKGLEIA 417
LKEF+EL SEE+TSLWDS+I+FN+LVETNLVF A RE + KIGL EACQA++TKGLEI+
Sbjct: 175 TLKEFQELISEELTSLWDSRINFNALVETNLVFGAYRENITKIGLPEACQALLTKGLEIS 354
Query: 418 AISK 421
AISK
Sbjct: 355 AISK 366
>BP085186
Length = 388
Score = 75.5 bits (184), Expect = 2e-14
Identities = 45/86 (52%), Positives = 52/86 (60%), Gaps = 22/86 (25%)
Frame = -1
Query: 539 AKAKEQILFLNPQVSINLAGSDPYARIVDGKLISPDTGD--------------------- 577
A+A QI FL+P ++INL GS+PYARIV+GKLISPD D
Sbjct: 388 AQALNQISFLHPDLAINLEGSNPYARIVNGKLISPDNADGEGNEEEEEEEEEEEEEEEEE 209
Query: 578 -EEDEGEEDKNEEDENVNDNEGEGEN 602
EE E EE+KNEE ENVN EGEGEN
Sbjct: 208 EEEAEPEEEKNEE-ENVNTQEGEGEN 134
>BP069078
Length = 452
Score = 45.8 bits (107), Expect = 2e-05
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Frame = -2
Query: 477 LKKHVEDL---NITQKAKEEELVKSKAE-ITHLNSSNAELKNENSKLHSEVSELKNSVLD 532
L+K ++ L NI + K +EL K K +T L +A LK +EV ELK+ V
Sbjct: 430 LRKKLDTLELENIEKDLKIKELEKEKKNLVTSLEIDHAVLKVTCENHEAEVEELKSEVAV 251
Query: 533 QFEAGFAKAKEQILFLNPQVSINLAGSDPYARIVDGKLI 571
++ +GF KA Q+ FL P + NL + P + DGK++
Sbjct: 250 KYASGFDKAIMQVRFLYP--NSNLEETGPSQVLQDGKVV 140
>BP057603
Length = 538
Score = 45.4 bits (106), Expect = 3e-05
Identities = 32/96 (33%), Positives = 48/96 (49%)
Frame = -3
Query: 476 RLKKHVEDLNITQKAKEEELVKSKAEITHLNSSNAELKNENSKLHSEVSELKNSVLDQFE 535
+L+ +DL I + E+ K +T L LK L +EV ELK V ++
Sbjct: 497 KLENREKDLKIKELEDEK-----KNLVTSLEIDRDVLKVTCENLEAEVEELKGEVALKYA 333
Query: 536 AGFAKAKEQILFLNPQVSINLAGSDPYARIVDGKLI 571
+GF KA Q+ FL P + NL + P+ + DGKL+
Sbjct: 332 SGFEKALMQVRFLYP--NSNLEETGPFKVVKDGKLV 231
>TC12611 weakly similar to UP|BAC83787 (BAC83787) Tetratricopeptide
repeat-containing protein-like, partial (4%)
Length = 704
Score = 33.9 bits (76), Expect = 0.077
Identities = 22/78 (28%), Positives = 39/78 (49%)
Frame = +3
Query: 464 EKKAADLALENERLKKHVEDLNITQKAKEEELVKSKAEITHLNSSNAELKNENSKLHSEV 523
EK A+ +RL V+ + +AK + + +AEI L +++L+N+ L V
Sbjct: 30 EKAASVCKARLDRLTNEVKSITPASEAKNKSIEDKQAEIETLTGLSSDLENKLEDLQLLV 209
Query: 524 SELKNSVLDQFEAGFAKA 541
S K+++ + E AKA
Sbjct: 210 SNPKSTLSELLEKVAAKA 263
>TC12711 similar to UP|Q84Y18 (Q84Y18) CAX-interacting protein 4, partial
(5%)
Length = 500
Score = 33.5 bits (75), Expect = 0.10
Identities = 20/67 (29%), Positives = 34/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 267 SDDDILRFRREQQAAREKRNPAKTLLDADASHSGTESNRPQKKKRKNETPES---AKGKD 323
SDDD RR +++ +EKR D+D+ S S R ++K ++ ++ S + G +
Sbjct: 74 SDDDDEYTRRHRKSRKEKRRRRSRRSDSDSETSDDSSTRHKRKSQREKSSSSDTDSSGYN 253
Query: 324 SSQPSME 330
SQ E
Sbjct: 254 DSQDGQE 274
>TC19330 similar to UP|Q96258 (Q96258) AR791, partial (11%)
Length = 507
Score = 32.3 bits (72), Expect = 0.22
Identities = 42/145 (28%), Positives = 64/145 (43%), Gaps = 20/145 (13%)
Frame = +2
Query: 391 EADREKVKKIGLKEACQAIMTKGLEIAAISKMIDLESADFDGINSAKQLEEKEREILKMK 450
EA++ K + I LK+ + + LE A + ++E+ + K LE + ++ K
Sbjct: 50 EAEQNKEQIINLKQRVSKL--QDLESQATASDQEIETK----LRRLKDLEAEAEQLRKTN 211
Query: 451 ATMKL--------LDS----ANKVNEKKAAD--------LALENERLKKHVEDLNITQKA 490
+++ LDS AN V E AD L LENE L K VE L + +
Sbjct: 212 LRLQMDNSDLARRLDSTQILANAVLEDPEADALREEGERLRLENEGLTKEVEQLQADRCS 391
Query: 491 KEEELVKSKAEITHLNSSNAELKNE 515
EELV +L NA L++E
Sbjct: 392 DVEELV-------YLRWINACLRHE 445
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 32.3 bits (72), Expect = 0.22
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +2
Query: 574 DTGDEEDEGEEDKNEEDENVNDNEGEGEN 602
D D++DE EED +++DE +D EGEG++
Sbjct: 806 DEDDDDDEEEEDDDDDDE--DDEEGEGKS 886
Score = 27.7 bits (60), Expect = 5.5
Identities = 8/28 (28%), Positives = 22/28 (78%)
Frame = +2
Query: 574 DTGDEEDEGEEDKNEEDENVNDNEGEGE 601
D ++ED+ ++++ E+D++ ++++ EGE
Sbjct: 794 DEDEDEDDDDDEEEEDDDDDDEDDEEGE 877
>TC10152 weakly similar to UP|Q40869 (Q40869) Late embryogenesis abundant
protein, partial (15%)
Length = 578
Score = 32.0 bits (71), Expect = 0.29
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +1
Query: 434 NSAKQLEEKEREIL-KMKATMKLLDSANKVNEKKAADLALENERLKKHVEDLNITQKAKE 492
++A Q+ +K + I K K TM+ + K N KAAD L + K
Sbjct: 322 DTANQISDKAQNITEKAKQTMQEAWDSTKNNANKAADNVLGKTQ--------------KS 459
Query: 493 EELVKSKAEIT--HLNSSNAELKNENS 517
E VK AE ++NS N ELK N+
Sbjct: 460 AEYVKENAETVKENMNSKNRELKFSNT 540
>AV416122
Length = 414
Score = 32.0 bits (71), Expect = 0.29
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 576 GDEEDEGEEDKNEEDENVNDNEGE 599
G+EE++ EEDK EEDE +D + +
Sbjct: 300 GEEEEDDEEDKEEEDEEEDDEDDD 371
Score = 29.6 bits (65), Expect = 1.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 577 DEEDEGEEDKNEEDENVNDNEGEGE 601
D+E++ EE+ EED+ +D+ GE E
Sbjct: 315 DDEEDKEEEDEEEDDEDDDSNGEAE 389
>BP043430
Length = 493
Score = 31.6 bits (70), Expect = 0.38
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -1
Query: 550 PQVSINLAGSDPYARIVDGKLISPDTGDEEDEGEEDKNEEDENVNDNEGEGE 601
P++ + +G D D + D G++ + EED+ EED N +D+ E E
Sbjct: 406 PKIPVKASGDDNEGSGKD----NDDEGNDNEVDEEDEEEEDSNDDDDGSESE 263
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 31.6 bits (70), Expect = 0.38
Identities = 14/26 (53%), Positives = 17/26 (64%)
Frame = -2
Query: 577 DEEDEGEEDKNEEDENVNDNEGEGEN 602
DEED+G ED+ EE DNE E E+
Sbjct: 368 DEEDDGGEDEEEEGVEEEDNEDEEED 291
Score = 30.4 bits (67), Expect = 0.85
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 567 DGKLISPDTGDEEDEGEED---KNEEDENVNDNEGEGE 601
DG+ D D+ED+ EED ++EE+E V + + E E
Sbjct: 413 DGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDE 300
Score = 29.3 bits (64), Expect = 1.9
Identities = 14/44 (31%), Positives = 24/44 (53%)
Frame = -2
Query: 557 AGSDPYARIVDGKLISPDTGDEEDEGEEDKNEEDENVNDNEGEG 600
AG+ P D + + +++D+ +ED +EED+ D E EG
Sbjct: 458 AGAGPEENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEG 327
Score = 28.1 bits (61), Expect = 4.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -2
Query: 567 DGKLISPDTGDEEDEGEEDKNEEDENVNDNEGEG 600
+G+ + D GDE+D+G+ E +E+++ +G G
Sbjct: 620 EGEDGNDDEGDEDDDGDGPFGEGEEDLSSEDGAG 519
Score = 27.3 bits (59), Expect = 7.2
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -2
Query: 574 DTGDEEDEGEEDKNEEDENVNDNEGEGEN 602
D DE+ E +ED +++DE+ ++ + GE+
Sbjct: 428 DEEDEDGEDQEDDDDDDEDDDEEDDGGED 342
Score = 26.9 bits (58), Expect = 9.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 577 DEEDEGEEDKNEEDENVNDNEGE 599
DEE+EG E+++ EDE ++ + E
Sbjct: 344 DEEEEGVEEEDNEDEEEDEEDEE 276
>TC15626
Length = 543
Score = 31.2 bits (69), Expect = 0.50
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 340 HMTLKAGSSSAPPPSWKSLLKEFEELTSEEVTSLWDSKIDFNSLVETNLV 389
H L+ +APP ++ + ++L S + S+W+S D NSLV ++V
Sbjct: 137 HRGLQVTEGAAPPLLVDLIVTQMKDLISSGMRSVWESCGDSNSLVVDSIV 286
>TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associated
complex alpha chain, partial (58%)
Length = 600
Score = 31.2 bits (69), Expect = 0.50
Identities = 10/23 (43%), Positives = 18/23 (77%)
Frame = +2
Query: 577 DEEDEGEEDKNEEDENVNDNEGE 599
DE+D+ E+D +E+D+N+ EG+
Sbjct: 146 DEDDDDEDDDDEDDDNIEGQEGD 214
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 30.8 bits (68), Expect = 0.65
Identities = 10/25 (40%), Positives = 22/25 (88%)
Frame = +3
Query: 577 DEEDEGEEDKNEEDENVNDNEGEGE 601
D+E+E +ED++++D++ +D++GE E
Sbjct: 267 DDEEEDDEDEDDDDDDDDDDDGEEE 341
Score = 30.4 bits (67), Expect = 0.85
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = +3
Query: 569 KLISPDTGDEEDEGEE--DKNEEDENVNDNEGEGE 601
K + D +EED+ EE D++E+D++ +D++ +GE
Sbjct: 231 KPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGE 335
Score = 28.1 bits (61), Expect = 4.2
Identities = 10/29 (34%), Positives = 21/29 (71%)
Frame = +3
Query: 574 DTGDEEDEGEEDKNEEDENVNDNEGEGEN 602
D +EED+ +ED +++D++ +D E E ++
Sbjct: 264 DDDEEEDDEDEDDDDDDDDDDDGEEEEDD 350
>BP076862
Length = 455
Score = 30.8 bits (68), Expect = 0.65
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = -1
Query: 553 SINLAGSDPYARIVDGKLIS---PDTGDEEDEGEEDKNEEDENVNDNEGEGEN 602
++N+ D + D + S P T D++ E +EE+EN++D+EGE E+
Sbjct: 374 NVNVYEDDDVQHVDDDLVASSSNPPTLDDDYIQETFSSEEEENMDDDEGESED 216
>TC15835
Length = 959
Score = 30.4 bits (67), Expect = 0.85
Identities = 14/38 (36%), Positives = 24/38 (62%)
Frame = +2
Query: 493 EELVKSKAEITHLNSSNAELKNENSKLHSEVSELKNSV 530
E+L +KA H+NS ++ K ++HSE+SEL+ +
Sbjct: 398 EQLRSAKASQEHINSKVSQHKIPFEEIHSEISELEEKL 511
>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
Length = 1093
Score = 30.0 bits (66), Expect = 1.1
Identities = 40/206 (19%), Positives = 86/206 (41%)
Frame = +2
Query: 391 EADREKVKKIGLKEACQAIMTKGLEIAAISKMIDLESADFDGINSAKQLEEKEREILKMK 450
+++ E+ K K+ + I+ +G A + +SA + S+K +++ ++ K
Sbjct: 89 KSEEEEDKSKAQKKTSKKIVKEGSGSKAGERT---KSAKKTPVKSSKNVDKTPKKSTP-K 256
Query: 451 ATMKLLDSANKVNEKKAADLALENERLKKHVEDLNITQKAKEEELVKSKAEITHLNSSNA 510
T DSA+ + K+ A + + + D +K++ SKA + S +
Sbjct: 257 QTAAEHDSAS-ASLSKSKQPASKKRKTENEKPDTKGKASSKKQTDKSSKALVKDQGKSKS 433
Query: 511 ELKNENSKLHSEVSELKNSVLDQFEAGFAKAKEQILFLNPQVSINLAGSDPYARIVDGKL 570
K + + + +L + + A + + L ++L + + +
Sbjct: 434 GKKAKAVPSREAMHAVVVDILKEVDFNTATLSDILRPLGTHFGVDLMHRKAEVKDIITDV 613
Query: 571 ISPDTGDEEDEGEEDKNEEDENVNDN 596
I+ + DEEDEGEE + D + +DN
Sbjct: 614 IN-NMSDEEDEGEEADGDGDADKDDN 688
>TC14866 similar to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ATB2,
partial (60%)
Length = 948
Score = 29.6 bits (65), Expect = 1.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +3
Query: 460 NKVNEKKAADLALENERLKKHVEDL--NITQKAKEEELVKSKAEITHLNSSNAELKNENS 517
NK + R + H+EDL +TQ KE + + IT N E ENS
Sbjct: 63 NKRKQSNRESARRSRMRKQSHLEDLTSQVTQLTKENGEILTNINITSQQYQNVE--TENS 236
Query: 518 KLHSEVSEL 526
L +++ EL
Sbjct: 237 ILRAQMGEL 263
>TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) precursor,
partial (51%)
Length = 1566
Score = 29.6 bits (65), Expect = 1.5
Identities = 23/79 (29%), Positives = 38/79 (47%), Gaps = 7/79 (8%)
Frame = +1
Query: 520 HSEVSELKNSVLDQFEAGF-AKAKEQILFLNPQVSINLAGSDPYARIV------DGKLIS 572
H + SE + +GF A+ +Q+ ++ + L D R + D IS
Sbjct: 313 HHQESEQEEEEGGSILSGFGAEFLQQVFNIDHDTAKQLQSPDDQRRQIVKVEGDDLSFIS 492
Query: 573 PDTGDEEDEGEEDKNEEDE 591
P++ D EDE EED++E+ E
Sbjct: 493 PESAD-EDEDEEDEDEDQE 546
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.130 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,364,724
Number of Sequences: 28460
Number of extensions: 132199
Number of successful extensions: 843
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of query: 603
length of database: 4,897,600
effective HSP length: 96
effective length of query: 507
effective length of database: 2,165,440
effective search space: 1097878080
effective search space used: 1097878080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0152.2