BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0135.11
(664 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11317 similar to UP|Q40363 (Q40363) NuM1 protein, partial (12%) 292 1e-79
BP048490 292 1e-79
TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%) 235 1e-62
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 94 7e-20
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 84 9e-17
TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprote... 77 7e-15
TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), par... 72 4e-13
TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28... 70 1e-12
TC16073 similar to UP|Q9FJN9 (Q9FJN9) Poly(A)-binding protein II... 69 2e-12
TC13012 similar to PIR|T50004|T50004 RNA binding protein-like - ... 68 4e-12
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 65 3e-11
TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, p... 65 5e-11
AV773507 64 6e-11
TC8052 similar to GB|AAP13431.1|30023796|BT006323 At5g02530 {Ara... 64 8e-11
TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (... 60 9e-10
BI419822 60 9e-10
BP042402 60 1e-09
AV413552 56 2e-08
TC20112 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 56 2e-08
TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 56 2e-08
>TC11317 similar to UP|Q40363 (Q40363) NuM1 protein, partial (12%)
Length = 547
Score = 292 bits (747), Expect = 1e-79
Identities = 155/155 (100%), Positives = 155/155 (100%)
Frame = +1
Query: 1 MPKSSKKSATKVEAAAPVAAAPKSAKKAKRAAEDEVEKQVSAKKQKIAEVAAKQKKETKL 60
MPKSSKKSATKVEAAAPVAAAPKSAKKAKRAAEDEVEKQVSAKKQKIAEVAAKQKKETKL
Sbjct: 82 MPKSSKKSATKVEAAAPVAAAPKSAKKAKRAAEDEVEKQVSAKKQKIAEVAAKQKKETKL 261
Query: 61 QKVKKESSSDDDSSSEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEEE 120
QKVKKESSSDDDSSSEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEEE
Sbjct: 262 QKVKKESSSDDDSSSEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEEE 441
Query: 121 VIAKKPTKVVVPKKEESSSDEDSSSDEDSSSESDD 155
VIAKKPTKVVVPKKEESSSDEDSSSDEDSSSESDD
Sbjct: 442 VIAKKPTKVVVPKKEESSSDEDSSSDEDSSSESDD 546
Score = 99.4 bits (246), Expect = 2e-21
Identities = 79/177 (44%), Positives = 101/177 (56%), Gaps = 4/177 (2%)
Frame = +1
Query: 65 KESSSDDDSSSEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEE--EVI 122
K S S+++ E AP A K+ AKKAK A + S+ +++ EV
Sbjct: 79 KMPKSSKKSATKVEAAAPVAAAPKS--------AKKAKRAAEDEVEKQVSAKKQKIAEVA 234
Query: 123 AKKPTKVVVPK-KEESSSDEDSSSDEDSSSESDDEKPAAKVAVPAKKAPAKNGSVTAPAK 181
AK+ + + K K+ESSSD+DSSS+ DEKPA KVA K KNG T PAK
Sbjct: 235 AKQKKETKLQKVKKESSSDDDSSSE--------DEKPAPKVA--PLKTSVKNG--TTPAK 378
Query: 182 KAQPAPSSSSESEDDDSSEEDEPSAKQPKKEVAVKPAVQKKKEESSSD-DSSSESED 237
KA+PAPSSSS S++D S EE+E AK+P K V K E+SSSD DSSSES+D
Sbjct: 379 KAKPAPSSSS-SDEDSSDEEEEVIAKKPTKVVVPKKEESSSDEDSSSDEDSSSESDD 546
Score = 76.3 bits (186), Expect = 2e-14
Identities = 61/160 (38%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Frame = +1
Query: 164 VPAKKAPAKNGSVTAPAKKAQPAPSSSSESED--DDSSEEDEPSAKQPKKEVAVKPA--- 218
V K+ K+ + A AP S+ +++ +D E+ + KQ EVA K
Sbjct: 76 VKMPKSSKKSATKVEAAAPVAAAPKSAKKAKRAAEDEVEKQVSAKKQKIAEVAAKQKKET 255
Query: 219 -VQKKKEESSSDDSSSESEDEKPAVKV-----SAPSKVVPAAVKNGAADSDSSDSDSSSD 272
+QK K+ESSSDD SS SEDEKPA KV S + PA A S SSD DSS +
Sbjct: 256 KLQKVKKESSSDDDSS-SEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDE 432
Query: 273 EDDDKKKPATKVAKKLPAAAPIKKVEKSESSDDESSESSD 312
E++ K TKV +P E S S +D SSES D
Sbjct: 433 EEEVIAKKPTKVV--VPKKEESSSDEDSSSDEDSSSESDD 546
Score = 65.1 bits (157), Expect = 3e-11
Identities = 54/151 (35%), Positives = 77/151 (50%), Gaps = 12/151 (7%)
Frame = +1
Query: 238 EKPAVKVSAPSKVVPAAVKNGAADSDSSDSDSSSDEDDDKKKPATKVAKKLPAAAPIKKV 297
+K A KV A + V AA A + + D + KK+ +VA K ++KV
Sbjct: 97 KKSATKVEAAAPV--AAAPKSAKKAKRAAEDEVEKQVSAKKQKIAEVAAKQKKETKLQKV 270
Query: 298 EKSESSDDESSESSDEENDSK--PATTTVAKPSAVKKSA----SSDSDDEDSSDSDSEV- 350
+K SSDD+SS S DE+ K P T+V + K A SS S DEDSSD + EV
Sbjct: 271 KKESSSDDDSS-SEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEEEVI 447
Query: 351 --KKDKMDV---DESDSSEDSDEEDEKSTKT 376
K K+ V +ES S EDS +++ S+++
Sbjct: 448 AKKPTKVVVPKKEESSSDEDSSSDEDSSSES 540
Score = 62.4 bits (150), Expect = 2e-10
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Frame = +1
Query: 126 PTKVVVPKKEESSSDE-DSSSDEDSSSESDDEKPAAKVAVPAKKAPAKNGSVTAPAKKAQ 184
P +V +PK + S+ + ++++ ++ +S + A K+ AK + A K +
Sbjct: 67 PLRVKMPKSSKKSATKVEAAAPVAAAPKSAKKAKRAAEDEVEKQVSAKKQKIAEVAAKQK 246
Query: 185 PAPS-----SSSESEDDDSSEEDEPSAKQPKKEVAVK----PAVQKKK--EESSSDDSSS 233
S S+DD SSE+++P+ K + +VK PA + K SSSD+ SS
Sbjct: 247 KETKLQKVKKESSSDDDSSSEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSS 426
Query: 234 ESEDEKPAVKVSAPSKVVPAAVKNGAADSDSSDSDSSSDEDDD 276
+ E+E A K P+KVV + ++D DSS + SS E DD
Sbjct: 427 DEEEEVIAKK---PTKVVVPKKEESSSDEDSSSDEDSSSESDD 546
Score = 57.8 bits (138), Expect = 6e-09
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Frame = +1
Query: 213 VAVKPAVQKKKEESSSDDSSSESEDEKPAVKVSAPSKVVPAAVKNGAADSDSSDSDSSSD 272
VA P KK + ++ D+ + +K + A + ++ +S SSD DSSS+
Sbjct: 133 VAAAPKSAKKAKRAAEDEVEKQVSAKKQKIAEVAAKQKKETKLQKVKKES-SSDDDSSSE 309
Query: 273 EDDDKKKPATKVAKKLPA----AAPIKKVEKSESSDDESSESSDEEND---SKPATTTVA 325
++ KPA KVA + P KK + + SS +SSDEE + KP V
Sbjct: 310 DE----KPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEEEVIAKKPTKVVVP 477
Query: 326 KPSAVKKSASSDSDDEDSSDSD 347
K S SD++ SS+SD
Sbjct: 478 KKEESSSDEDSSSDEDSSSESD 543
Score = 33.5 bits (75), Expect = 0.11
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = -3
Query: 67 SSSDDDSSSEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEEEVIAKKP 126
S SD++SSS++E + ++ GTT SSSSS+E SS+E E
Sbjct: 542 SDSDEESSSDEESSSELLSSFF-----GTTTLVGFFAITSSSSSEESSSEELELGAGLAF 378
Query: 127 TKVVVPKKEE-----SSSDEDSSSDEDSSSE 152
VVP E + SSSDE+SSSE
Sbjct: 377 FAGVVPFFTEVFRGATLGAGFSSSDEESSSE 285
Score = 27.7 bits (60), Expect = 6.2
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = -3
Query: 302 SSDDESSESSDEENDSKP-----ATTTVAKPSAVKKSASSDSDDEDSSDSDSEV 350
SSD + SSDEE+ S+ TTT+ A+ S+SS E+SS + E+
Sbjct: 545 SSDSDEESSSDEESSSELLSSFFGTTTLVGFFAITSSSSS----EESSSEELEL 396
>BP048490
Length = 452
Score = 292 bits (747), Expect = 1e-79
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +3
Query: 296 KVEKSESSDDESSESSDEENDSKPATTTVAKPSAVKKSASSDSDDEDSSDSDSEVKKDKM 355
KVEKSESSDDESSESSDEENDSKPATTTVAKPSAVKKSASSDSDDEDSSDSDSEVKKDKM
Sbjct: 3 KVEKSESSDDESSESSDEENDSKPATTTVAKPSAVKKSASSDSDDEDSSDSDSEVKKDKM 182
Query: 356 DVDESDSSEDSDEEDEKSTKTPQKKVKDVEMVDASSGKNAPKTPAAQTENEGSKTLFVGN 415
DVDESDSSEDSDEEDEKSTKTPQKKVKDVEMVDASSGKNAPKTPAAQTENEGSKTLFVGN
Sbjct: 183 DVDESDSSEDSDEEDEKSTKTPQKKVKDVEMVDASSGKNAPKTPAAQTENEGSKTLFVGN 362
Query: 416 LSFSVQRSDVENFFKDCGEVVDVRLATDED 445
LSFSVQRSDVENFFKDCGEVVDVRLATDED
Sbjct: 363 LSFSVQRSDVENFFKDCGEVVDVRLATDED 452
Score = 55.5 bits (132), Expect = 3e-08
Identities = 49/135 (36%), Positives = 64/135 (47%), Gaps = 2/135 (1%)
Frame = +3
Query: 62 KVKKESSSDDDSS-SEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEEE 120
KV+K SSDD+SS S DE+ K P T+V + K A SS S DEDSSD + E
Sbjct: 3 KVEKSESSDDESSESSDEENDSK--PATTTVAKPSAVKKSA----SSDSDDEDSSDSDSE 164
Query: 121 VIAKKPTKVVVPKKEESSSDE-DSSSDEDSSSESDDEKPAAKVAVPAKKAPAKNGSVTAP 179
V KK++ DE DSS D D E + P KV + A +G
Sbjct: 165 V-----------KKDKMDVDESDSSEDSDEEDEKSTKTPQKKVK-DVEMVDASSG----- 293
Query: 180 AKKAQPAPSSSSESE 194
K A P++ +E+E
Sbjct: 294 -KNAPKTPAAQTENE 335
Score = 55.1 bits (131), Expect = 4e-08
Identities = 36/127 (28%), Positives = 54/127 (42%)
Frame = +3
Query: 190 SSESEDDDSSEEDEPSAKQPKKEVAVKPAVQKKKEESSSDDSSSESEDEKPAVKVSAPSK 249
S S+D+ S DE + +P KP+ KK S SDD S D +
Sbjct: 15 SESSDDESSESSDEENDSKPATTTVAKPSAVKKSASSDSDDEDSSDSDSE---------- 164
Query: 250 VVPAAVKNGAADSDSSDSDSSSDEDDDKKKPATKVAKKLPAAAPIKKVEKSESSDDESSE 309
VK D D SDS SDE+D+K +TK +K ++ V+ S + +
Sbjct: 165 -----VKKDKMDVDESDSSEDSDEEDEK---STKTPQK--KVKDVEMVDASSGKNAPKTP 314
Query: 310 SSDEEND 316
++ EN+
Sbjct: 315 AAQTENE 335
Score = 52.4 bits (124), Expect = 2e-07
Identities = 38/132 (28%), Positives = 56/132 (41%)
Frame = +3
Query: 107 SSSSDEDSSDEEEEVIAKKPTKVVVPKKEESSSDEDSSSDEDSSSESDDEKPAAKVAVPA 166
S SSD++SS+ +E KP V K S SD++ SS+SD E
Sbjct: 15 SESSDDESSESSDEENDSKPATTTVAKPSAVKKSASSDSDDEDSSDSDSE---------- 164
Query: 167 KKAPAKNGSVTAPAKKAQPAPSSSSESEDDDSSEEDEPSAKQPKKEVAVKPAVQKKKEES 226
KK + S SED D EEDE S K P+K+V V ++
Sbjct: 165 -------------VKKDKMDVDESDSSEDSD--EEDEKSTKTPQKKVKDVEMVDASSGKN 299
Query: 227 SSDDSSSESEDE 238
+ ++++E+E
Sbjct: 300 APKTPAAQTENE 335
>TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%)
Length = 562
Score = 235 bits (600), Expect = 1e-62
Identities = 112/115 (97%), Positives = 112/115 (97%)
Frame = +2
Query: 550 SGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRDNQGSGGRSGGGRSGGGR 609
SGN KGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRDNQGSGGRSGGGRSGGGR
Sbjct: 2 SGNXKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRDNQGSGGRSGGGRSGGGR 181
Query: 610 GGRFDSGRGGGRGRFGSGGRGGDRGGRGGRGGGGRGGRGTPLRAEGKKTTFADED 664
GGRFDSGRGGGRGRFGSGGRGGDRGGRGG GGGGRGGRGTPLRA GKKTTFADED
Sbjct: 182 GGRFDSGRGGGRGRFGSGGRGGDRGGRGGSGGGGRGGRGTPLRAAGKKTTFADED 346
Score = 29.6 bits (65), Expect = 1.6
Identities = 18/61 (29%), Positives = 30/61 (48%)
Frame = +2
Query: 446 GRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGR 505
G KGF +++F+ + ALE + S+L + +D A+ R + G + GGR
Sbjct: 5 GNXKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRD-NQGSGGRSGGGRSGGGR 181
Query: 506 G 506
G
Sbjct: 182 G 184
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 94.0 bits (232), Expect = 7e-20
Identities = 54/124 (43%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Frame = +1
Query: 528 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE-LHDSDLGGFTLAVD 586
+L++ F S GEI V D E+G +GF ++ F+ ++ A+E ++ ++L G + V+
Sbjct: 127 TLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEAMRSAIEGMNGNELDGRNITVN 306
Query: 587 EAKPRDNQGSGGRSGGGRSGGGRGGRFDSGRGGGRGRFGSGGRGGDRGGRGGRGGGGR-- 644
EA+ R G GG GGG GGG GGR + G GGG G G GG GG GG GG G GGR
Sbjct: 307 EAQARGGGGGGGGRGGGGYGGG-GGRREGGYGGGGGSRGYGGGGGGYGGGGGGGYGGRRE 483
Query: 645 GGRG 648
GG G
Sbjct: 484 GGYG 495
Score = 57.0 bits (136), Expect = 1e-08
Identities = 33/95 (34%), Positives = 51/95 (52%), Gaps = 2/95 (2%)
Frame = +1
Query: 412 FVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSALE-YN 469
FVG L+++ +E F GE++D ++ D E GR +GFG V F + A +SA+E N
Sbjct: 91 FVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEAMRSAIEGMN 270
Query: 470 GSELLQRPVRLDLARERGAYTPNSGAANNSFQKGG 504
G+EL R + ++ A+ RG G + GG
Sbjct: 271 GNELDGRNITVNEAQARGGGGGGGGRGGGGYGGGG 375
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 83.6 bits (205), Expect = 9e-17
Identities = 52/131 (39%), Positives = 69/131 (51%), Gaps = 8/131 (6%)
Frame = +2
Query: 533 FGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE-LHDSDLGGFTLAVDEAKPR 591
FG C + V D E+G +GF ++ F+ S+ A+E ++ D+ G + V+EA+ R
Sbjct: 431 FGFC-----VQVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGRNVTVNEAQAR 595
Query: 592 DNQGSGGRSG--GGRS----GGGRGGRFDSGRGGGRGRFGSGGRGGDR-GGRGGRGGGGR 644
G GG G GGR GGG G R+ G GGG G G GG GG R GG GG GG
Sbjct: 596 GRGGGGGGGGYGGGRREGGYGGGGGSRYSGGGGGGYGGSGGGGYGGRREGGGGGYGGSRE 775
Query: 645 GGRGTPLRAEG 655
GG G+ + G
Sbjct: 776 GGGGSRYSSGG 808
>TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
chloroplast precursor (CP29A), partial (63%)
Length = 1602
Score = 77.4 bits (189), Expect = 7e-15
Identities = 65/211 (30%), Positives = 100/211 (46%), Gaps = 30/211 (14%)
Frame = +3
Query: 411 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSALE-Y 468
+FVGNL FSV + + F+D G V V + D+ G +GF V ++AA A++A + +
Sbjct: 351 VFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMSSAAEAEAAAQQF 530
Query: 469 NGSELLQRPVRLDLA----RERGAYTPNSGAANNSFQKGG----RGQSQTVFVRGFDKFQ 520
N EL R +R++ E + N NNSF +GG RG S G D ++
Sbjct: 531 NNYELEGRALRVNSGPPPKNENRGFNENPRFRNNSFNRGGSDSYRGGSDGYRGGGSDGYR 710
Query: 521 G-------EDDI----------KSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSD 563
G E+ + ++L+ F G + V D ESG +GF ++ FS
Sbjct: 711 GGGSSSYSENRVHVGNLAWGVDNAALESLFREQGRVVDAKVIYDRESGRSRGFGFVTFSS 890
Query: 564 TNSVNKAL-ELHDSDLGGFTLAVDEA--KPR 591
+ VN A+ L +DL G + V +A KP+
Sbjct: 891 PDEVNSAIRSLDGADLNGRAIKVSQADSKPK 983
Score = 43.1 bits (100), Expect = 1e-04
Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Frame = +3
Query: 527 SSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE-LHDSDLGGFTLAV 585
+ L E F G + + V D +GN +GFA++ S A + ++ +L G L V
Sbjct: 387 AQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMSSAAEAEAAAQQFNNYELEGRALRV 566
Query: 586 DEAKPRDNQGSGGRSGGGRSGGGRGGRFDSGRGGGRGRFGSGG-RGGDRGGRGGRGGGGR 644
+ P N+ G RF R R GS RGG G RGG G R
Sbjct: 567 NSGPPPKNENRGFNENP---------RF---RNNSFNRGGSDSYRGGSDGYRGGGSDGYR 710
Query: 645 GG 646
GG
Sbjct: 711 GG 716
>TC14791 similar to UP|Q9LJ04 (Q9LJ04) ESTs AU082210(C53655), partial (37%)
Length = 1779
Score = 71.6 bits (174), Expect = 4e-13
Identities = 100/457 (21%), Positives = 178/457 (38%), Gaps = 33/457 (7%)
Frame = +2
Query: 207 KQPKKEVAVKPAVQKKKEESSSDDSSSESEDEKPAVKVSAPSKVVPAAVKNGAADSDSSD 266
KQP++ AV+PA K + D S E + ++P V P+ + + A D + +
Sbjct: 68 KQPQRSPAVEPAA-KPVDVEPQDQDSVELDHQQPPNPV--PTTDLDQSNNTMAVDEEPEE 238
Query: 267 SDSSSDEDDDKKKPATKVAKKLPAAAPIKKVEKSESSDDESSESSDEENDSKPATTTVAK 326
D E +D+ + V ++ AP + + + +++D N+S A A
Sbjct: 239 QDQ---ETEDQPQIDDAVEEEQDPEAPATTESEPQQQQETLEDNADAPNESSAAAAAAAS 409
Query: 327 PSAVKKSASSDSDDEDSSDSDSEVKKDKMD-VDESDSSEDSDEEDEKSTKTPQKKVKDVE 385
S S++++E+ + D E++++ ++ + E + E +++ + V++V
Sbjct: 410 ESVAN---GSNNNEEEEEEEDLELEEEPVERLLEPFTREQLHSLVKQAAEKYPDFVENVR 580
Query: 386 MVDASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE- 444
+ A PA + +FV L + + + F GE+ D + TD+
Sbjct: 581 QL-------ADVDPA-------HRKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKV 718
Query: 445 DGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERG--AYTPNSGAANNSFQK 502
G+ KG+ + F + AL+ ++ R LA A PN+ + Q+
Sbjct: 719 TGKSKGYAFILFKHRDGCRRALKNPQKKIGNRTTSSQLASAGPVPATPPNAPPVSEYTQR 898
Query: 503 GGRGQSQTVFVRGFDKFQGEDDIKS-SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDF 561
+FV DI+ L E F GE+ + D +G KGFA +
Sbjct: 899 -------KIFVSNVSS-----DIEPLKLLEFFKQFGEVEDGPLGLDKNTGRPKGFALFVY 1042
Query: 562 SDTNSVNKALELHDSDLGGFTLAVDEA--KPRDNQG------------------------ 595
S KALE + + G TL +A P+ ++G
Sbjct: 1043RSVESAKKALEEPNKEYEGHTLYCQKAVDGPKGSKGYHQNQHQHQHQHHSHHHQPHYQPH 1222
Query: 596 --SGGRSGGGRSGGGRGGRFDSGRGGGRGRFGSGGRG 630
SGGG S GG GG + G G + G +G
Sbjct: 1223KKHKYNSGGGPSHGG-GGHLMAPSNPGMGGYNPGVQG 1330
Score = 56.2 bits (134), Expect = 2e-08
Identities = 77/340 (22%), Positives = 143/340 (41%), Gaps = 24/340 (7%)
Frame = +2
Query: 157 KPAAKVAVPAKKAPAKNGSVTAPAKKA-QPAP------SSSSESEDDDSSEEDEPSAKQP 209
+PAAK P P SV ++ P P S+++ + D++ E+D+ + QP
Sbjct: 95 EPAAK---PVDVEPQDQDSVELDHQQPPNPVPTTDLDQSNNTMAVDEEPEEQDQETEDQP 265
Query: 210 KKEVAVKPAVQKKKEESSSDDSSSESEDEKPAVKVSAPSKVVPAAVKNGAADSDSSDSDS 269
+ + AV+ ++ E ++ +S + + E AP++ AA AA S+S + S
Sbjct: 266 QIDDAVEE--EQDPEAPATTESEPQQQQETLEDNADAPNESSAAA---AAAASESVANGS 430
Query: 270 SSDEDDDKKKPATKVAKKLPAAAPIKKVEKSESSDDESSESSDE--ENDSKPATTTVAKP 327
+++E++++++ + + E+ S +++E + EN + A A
Sbjct: 431 NNNEEEEEEEDLELEEEPVERLLEPFTREQLHSLVKQAAEKYPDFVENVRQLADVDPAHR 610
Query: 328 SAVKKSASSDSDDEDSSDSDS---EVKKDKMDVDESDSSEDS--------DEEDEKSTKT 376
D+ E + S E++ K D+ + ++ K
Sbjct: 611 KIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGYAFILFKHRDGCRRALKN 790
Query: 377 PQKKVKD-VEMVDASSGKNAPKTP--AAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCG 433
PQKK+ + +S P TP A + +FV N+S ++ + FFK G
Sbjct: 791 PQKKIGNRTTSSQLASAGPVPATPPNAPPVSEYTQRKIFVSNVSSDIEPLKLLEFFKQFG 970
Query: 434 EVVDVRLATDED-GRFKGFGHVEFATAAAAQSALEYNGSE 472
EV D L D++ GR KGF + + +A+ ALE E
Sbjct: 971 EVEDGPLGLDKNTGRPKGFALFVYRSVESAKKALEEPNKE 1090
>TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28040
{Arabidopsis thaliana;}, partial (8%)
Length = 937
Score = 69.7 bits (169), Expect = 1e-12
Identities = 67/246 (27%), Positives = 101/246 (40%), Gaps = 4/246 (1%)
Frame = -3
Query: 81 APKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEEEVIAKKPTKVVVPKKEESSSD 140
APK T + P+ P +SSSS+ + D++ P V K ++ +
Sbjct: 917 APKP*SQITMAQKQKRPSPLEDPPTASSSSESEEEDDQ-------PLSQV---KHAAAEE 768
Query: 141 EDSSSDEDSSSESDDEKPAAKVAVPAKKAPAKNGSVTAPAKKAQPAPSSSSESEDDDSSE 200
E+ SS+E+ SSE ++E APA + T+ K QP P S S ++ D S+
Sbjct: 767 EELSSEEEGSSEEEEEDETT--------APAPPAATTSHTKPPQPEPESDSATQSDSESD 612
Query: 201 EDE---PSAKQPKKEVAVKPAVQKKKEESSSDDSSSESEDEKPAVKVSAPSKVVPAAVKN 257
D PSA P VKP K + +++ KP + S PA K+
Sbjct: 611 TDSDQAPSASAPTPNPKVKPLATKPMD---------QTQTHKPKAQPS------PAPAKS 477
Query: 258 GAADSDSSDSDSSSDEDDDKKKPATKVAKKLPAAAPIKKVEKSESSDDESSESSDEE-ND 316
A + S++++ D K+ K PAAA SD+E E + ND
Sbjct: 476 AAKRAAESNANAG-----DSKRAKKKAVDSAPAAA--------AGSDEEMEEDGKKSGND 336
Query: 317 SKPATT 322
SK T
Sbjct: 335 SKKQFT 318
Score = 64.3 bits (155), Expect = 6e-11
Identities = 55/202 (27%), Positives = 80/202 (39%), Gaps = 12/202 (5%)
Frame = -3
Query: 50 VAAKQKKETKLQKVKKESSSDDDSSSEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSS 109
+A KQK+ + L+ SSS +S ED++P +V A SS
Sbjct: 890 MAQKQKRPSPLEDPPTASSS-SESEEEDDQPLSQV-------------KHAAAEEEELSS 753
Query: 110 SDEDSSDEEEEVIAKKP------TKVVVPKKEESSSDEDSSSDEDSSSESDDEKPAAKVA 163
+E SS+EEEE P T P + E SD + SD +S ++S D+ P+A
Sbjct: 752 EEEGSSEEEEEDETTAPAPPAATTSHTKPPQPEPESDSATQSDSESDTDS-DQAPSASAP 576
Query: 164 VPAKKA------PAKNGSVTAPAKKAQPAPSSSSESEDDDSSEEDEPSAKQPKKEVAVKP 217
P K P P + PAP+ S+ +S+ S + KK V P
Sbjct: 575 TPNPKVKPLATKPMDQTQTHKPKAQPSPAPAKSAAKRAAESNANAGDSKRAKKKAVDSAP 396
Query: 218 AVQKKKEESSSDDSSSESEDEK 239
A +E +D D K
Sbjct: 395 AAAAGSDEEMEEDGKKSGNDSK 330
Score = 57.0 bits (136), Expect = 1e-08
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 13/225 (5%)
Frame = -3
Query: 169 APAKNGSVTAPAKKAQPAP-------SSSSES-EDDDSSEEDEPSAKQPKKEVAVKPAVQ 220
AP +T K+ +P+P SSSSES E+DD QP + VK A
Sbjct: 917 APKP*SQITMAQKQKRPSPLEDPPTASSSSESEEEDD----------QPLSQ--VKHAAA 774
Query: 221 KKKEESSSDDSSSESEDE----KPAVKVSAPSKVVPAAVKNGAADSDS-SDSDSSSDEDD 275
+++E SS ++ SSE E+E PA + S P + +SDS + SDS SD D
Sbjct: 773 EEEELSSEEEGSSEEEEEDETTAPAPPAATTSHTKPPQPE---PESDSATQSDSESDTDS 603
Query: 276 DKKKPATKVAKKLPAAAPIKKVEKSESSDDESSESSDEENDSKPATTTVAKPSAVKKSAS 335
D+ A+ A P KV+ + + +++ + PA SA K++A
Sbjct: 602 DQAPSAS-------APTPNPKVKPLATKPMDQTQTHKPKAQPSPAPA----KSAAKRAAE 456
Query: 336 SDSDDEDSSDSDSEVKKDKMDVDESDSSEDSDEEDEKSTKTPQKK 380
S+++ DS + + D + S E+ +E+ +KS +K+
Sbjct: 455 SNANAGDSKRAKKKA-VDSAPAAAAGSDEEMEEDGKKSGNDSKKQ 324
Score = 49.3 bits (116), Expect = 2e-06
Identities = 37/122 (30%), Positives = 51/122 (41%)
Frame = -3
Query: 261 DSDSSDSDSSSDEDDDKKKPATKVAKKLPAAAPIKKVEKSESSDDESSESSDEENDSKPA 320
D ++ S S S+E+DD+ K A E+ E S +E S +EE D
Sbjct: 854 DPPTASSSSESEEEDDQPLSQVKHAA----------AEEEELSSEEEGSSEEEEEDE--- 714
Query: 321 TTTVAKPSAVKKSASSDSDDEDSSDSDSEVKKDKMDVDESDSSEDSDEEDEKSTKTPQKK 380
TT P A S + E SDS ++ +S+S DSD+ S TP K
Sbjct: 713 -TTAPAPPAATTSHTKPPQPEPESDSATQ--------SDSESDTDSDQAPSASAPTPNPK 561
Query: 381 VK 382
VK
Sbjct: 560 VK 555
Score = 32.0 bits (71), Expect = 0.33
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 258 GAADSDSSDSDSSSDEDDDKKKPATKVAKKLPAAAPIKKVEKSESSDDESSESSDEENDS 317
GA SDS+S + D + ++ AA V S SS E SS+E + S
Sbjct: 592 GAWSESVSDSESDWVAESDSGSG*GGLVWEVVAAGGAGAVVSSSSSSSEEPSSSEESSSS 771
Query: 318 KPATTTVAKPSAVKKSASSDSDDEDSSDSDS 348
A + S+SSDS++ED+ S
Sbjct: 772 SAAACFT*ERGW--SSSSSDSEEEDAVGGSS 858
>TC16073 similar to UP|Q9FJN9 (Q9FJN9) Poly(A)-binding protein II-like,
partial (59%)
Length = 529
Score = 69.3 bits (168), Expect = 2e-12
Identities = 42/144 (29%), Positives = 77/144 (53%), Gaps = 9/144 (6%)
Frame = +1
Query: 339 DDEDSSDSDSEVKKDKMDVDESDSSEDSDEED---------EKSTKTPQKKVKDVEMVDA 389
D+E D+D++ ++ D D + + + D ED E+++ + + K + + A
Sbjct: 94 DEEVEMDADADADAEQQDHDFASNHPNKDLEDMKKRLKEIEEEASALREMQAKVEKDMGA 273
Query: 390 SSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFK 449
+ T A + E +G ++++VGN+ ++ +V+ F+ CG V V + TD+ G+ K
Sbjct: 274 VQDAGSSATQAEKEEVDG-RSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPK 450
Query: 450 GFGHVEFATAAAAQSALEYNGSEL 473
GF +VEF A A Q+A+ N SEL
Sbjct: 451 GFAYVEFVEAEAVQNAVMLNESEL 522
Score = 48.5 bits (114), Expect = 3e-06
Identities = 29/105 (27%), Positives = 58/105 (54%)
Frame = +1
Query: 476 RPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGS 535
R ++ + ++ GA +A + ++ G+S ++V D +++ Q+HF S
Sbjct: 235 REMQAKVEKDMGAVQDAGSSATQAEKEEVDGRS--IYVGNVDYACTPEEV----QQHFQS 396
Query: 536 CGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGG 580
CG + R+++ D + G KGFAY++F + +V A+ L++S+L G
Sbjct: 397 CGTVNRVTILTD-KFGQPKGFAYVEFVEAEAVQNAVMLNESELHG 528
>TC13012 similar to PIR|T50004|T50004 RNA binding protein-like - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (84%)
Length = 625
Score = 68.2 bits (165), Expect = 4e-12
Identities = 46/141 (32%), Positives = 74/141 (51%)
Frame = +3
Query: 340 DEDSSDSDSEVKKDKMDVDESDSSEDSDEEDEKSTKTPQKKVKDVEMVDASSGKNAPKTP 399
D D S +D + K ++DE EE+ + + Q KV+ E+ A +
Sbjct: 117 DVDMSAADDDAAAVK-ELDEMKRRLKEMEEEAAALREMQAKVEK-EIGTVQDPAAAAASQ 290
Query: 400 AAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATA 459
A + E +G +++FVGN+ ++ +V+ F+ CG V V + TD+ G+ KGF +VEF A
Sbjct: 291 ANKEETDG-RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEA 467
Query: 460 AAAQSALEYNGSELLQRPVRL 480
A Q AL N SEL R +++
Sbjct: 468 EAVQEALRLNESELHGRQLKV 530
Score = 53.1 bits (126), Expect = 1e-07
Identities = 33/95 (34%), Positives = 56/95 (58%)
Frame = +3
Query: 491 PNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFES 550
P + AA+ + ++ G+S VFV D +++ Q+HF SCG + R+++ D +
Sbjct: 267 PAAAAASQANKEETDGRS--VFVGNVDYACTPEEV----QQHFQSCGTVNRVTILTD-KF 425
Query: 551 GNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 585
G KGFAY++F + +V +AL L++S+L G L V
Sbjct: 426 GQPKGFAYVEFVEAEAVQEALRLNESELHGRQLKV 530
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 65.1 bits (157), Expect = 3e-11
Identities = 40/98 (40%), Positives = 48/98 (48%)
Frame = +3
Query: 551 GNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRDNQGSGGRSGGGRSGGGRG 610
G + ++ SD + KA+E+ G AV + G GGR GGG GGG G
Sbjct: 171 GEGEDVEFIVASDPDGRAKAIEV----TGPNGQAVQGTRRGGGAGGGGRGGGGYGGGGYG 338
Query: 611 GRFDSGRGGGRGRFGSGGRGGDRGGRGGRGGGGRGGRG 648
G G G G G +G GG G GG GG GG G GGRG
Sbjct: 339 GGGYGGGGRGGGGYGGGGGYGGSGGYGGGGGYGGGGRG 452
Score = 57.0 bits (136), Expect = 1e-08
Identities = 31/52 (59%), Positives = 31/52 (59%)
Frame = +3
Query: 595 GSGGRSGGGRSGGGRGGRFDSGRGGGRGRFGSGGRGGDRGGRGGRGGGGRGG 646
G GG GGGR GGG GG G GG G G GG GG GGRGG GGG GG
Sbjct: 336 GGGGYGGGGRGGGGYGG--GGGYGGSGGYGGGGGYGG--GGRGGGRGGGGGG 479
>TC14336 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
(85%)
Length = 1917
Score = 64.7 bits (156), Expect = 5e-11
Identities = 46/169 (27%), Positives = 83/169 (48%), Gaps = 3/169 (1%)
Frame = +2
Query: 407 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 466
G+ +F+ NL ++ + + F G ++ ++ATD G+ KG+G V+F T AAQ+A+
Sbjct: 86 GAGNIFIKNLDKAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFETEEAAQNAI 265
Query: 467 E-YNGSELLQRPVRLD--LARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGED 523
E NG L + V + L ++ + + NN VFV+ + +D
Sbjct: 266 EKLNGMLLNDKQVYVGPFLRKQERESSTDKAKFNN------------VFVKNLSESTTDD 409
Query: 524 DIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 572
++K+ FG G IT V +D + G K F +++F + + +A+E
Sbjct: 410 ELKNV----FGEFGTITSAVVMRDGD-GKSKCFGFVNFENADDAARAVE 541
Score = 53.1 bits (126), Expect = 1e-07
Identities = 45/177 (25%), Positives = 80/177 (44%), Gaps = 6/177 (3%)
Frame = +2
Query: 401 AQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAA 460
+ T+ +FV NLS S +++N F + G + + D DG+ K FG V F A
Sbjct: 341 SSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENAD 520
Query: 461 AAQSALE-YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQK-----GGRGQSQTVFVR 514
A A+E NG ++ + + A+++ + N F++ + Q ++V+
Sbjct: 521 DAARAVESLNGKKVDDKEWYVGKAQKK---SEREQELKNKFEQSMKEAADKYQGANLYVK 691
Query: 515 GFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL 571
D ++ +K E F S G IT V +D +G +G ++ FS ++AL
Sbjct: 692 NLDDSIADEKLK----ELFSSYGTITSCKVMRD-PNGISRGSGFVAFSTPEEASRAL 847
>AV773507
Length = 496
Score = 64.3 bits (155), Expect = 6e-11
Identities = 47/154 (30%), Positives = 71/154 (45%), Gaps = 22/154 (14%)
Frame = +2
Query: 523 DDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL-ELHDSDLGGF 581
D + L+ F G+I + + ++G +GF ++ F+D + A+ E+H ++G
Sbjct: 41 DVTERQLEHAFDRDGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDR 220
Query: 582 TLAVDEAKPR--DNQGSGGRSGGGRSGGGRGGR-----------FDSGRGGGRGRFGSGG 628
++V++A+P+ + G GGG S GGRG F+ GR G R R
Sbjct: 221 IISVNKAQPKMGGDDADQGYRGGGYSSGGRGSYGAGDRVGQDDCFECGRPGHRARDCPLA 400
Query: 629 RGGDRGGRGGRGG--------GGRGGRGTPLRAE 654
GG GGRG GG GG GG G L E
Sbjct: 401 GGG--GGRGRGGGSLSSRPRYGGSGGHGDRLGGE 496
>TC8052 similar to GB|AAP13431.1|30023796|BT006323 At5g02530 {Arabidopsis
thaliana;}, partial (55%)
Length = 1389
Score = 63.9 bits (154), Expect = 8e-11
Identities = 57/167 (34%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Frame = +2
Query: 503 GGRGQS----QTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAY 558
GGR S +++ D DDIK E F G++ R +V D SG KG A
Sbjct: 371 GGRASSIETGTKLYISNLDYGVSSDDIK----ELFSEVGDLKRHTVHYD-RSGRSKGTAE 535
Query: 559 LDFSDTNSVNKALELHDS----------DLGGFTLAVDEAKPRDNQGSGGRSGGGRSGGG 608
+ FS A++ +++ ++ G + P N G +G RSG G
Sbjct: 536 VVFSRRGDAEAAVKRYNNVQLDGKPMKIEIVGTNITTPAVAPAANGAFGNSNGVPRSGQG 715
Query: 609 RGGRFDSGRGGGRGRFGSGGRG-GDRGGRGGRGGGGRGGRGTPLRAE 654
RGG F RGG G GGRG G R GR GRG G GRG + AE
Sbjct: 716 RGGAFGRLRGG-----GDGGRGRGHRRGR-GRGRGHGRGRGEKVSAE 838
>TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (Fibrillarin
2) (AtFib2), partial (85%)
Length = 1116
Score = 60.5 bits (145), Expect = 9e-10
Identities = 39/71 (54%), Positives = 41/71 (56%), Gaps = 3/71 (4%)
Frame = +1
Query: 581 FTLAVDEAKPRDNQGSGGRSGGGRSGGGRGGRFDSGRGGGRG---RFGSGGRGGDRGGRG 637
F L+ PR G GG G G G GRG GRGGGRG + GGRGG GGRG
Sbjct: 16 FKLSKMVPPPRGRGGGGGFRGRGDRGRGRGD--GGGRGGGRGTPFKARGGGRGGG-GGRG 186
Query: 638 GRGGGGRGGRG 648
GR GGGRGGRG
Sbjct: 187 GR-GGGRGGRG 216
Score = 57.8 bits (138), Expect = 6e-09
Identities = 37/66 (56%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 591 RDNQGSGGRSGGGRSGGGRGGRFDSGRGGGRGRFGS-GGRGGDRGGRGGRGGGGRGGRGT 649
R ++G G GGGR GGGRG F + RGGGRG G GGRGG RGGRGG GG
Sbjct: 79 RGDRGRGRGDGGGR-GGGRGTPFKA-RGGGRGGGGGRGGRGGGRGGRGGGMKGGSRVVVE 252
Query: 650 PLRAEG 655
P R EG
Sbjct: 253 PHRHEG 270
Score = 46.2 bits (108), Expect = 2e-05
Identities = 24/40 (60%), Positives = 25/40 (62%)
Frame = +1
Query: 616 GRGGGRGRFGSGGRGGDRGGRGGRGGGGRGGRGTPLRAEG 655
GRGGG G G G RG RG GGRGG GRGTP +A G
Sbjct: 49 GRGGGGGFRGRGDRGRGRGDGGGRGG----GRGTPFKARG 156
>BI419822
Length = 380
Score = 60.5 bits (145), Expect = 9e-10
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2
Query: 528 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE-LHDSDLGGFTLAVD 586
+L++ F GEI V D E+G +GF ++ F+ ++ A+E ++ +L G + V+
Sbjct: 122 ALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFASEQAMKDAIEAMNGQNLDGRNITVN 301
Query: 587 EAKPRDNQGSGGRSGGGRSGGGRGG 611
EA+ R + G GGR GGG G G GG
Sbjct: 302 EAQSRGSSGGGGRYGGGGGGYGGGG 376
Score = 50.8 bits (120), Expect = 7e-07
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Frame = +2
Query: 412 FVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSALE-YN 469
FVG L+++ +E F GE+V+ ++ D E GR +GFG V FA+ A + A+E N
Sbjct: 86 FVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFASEQAMKDAIEAMN 265
Query: 470 GSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRG 506
G L R + ++ A+ RG S + GG G
Sbjct: 266 GQNLDGRNITVNEAQSRG-----SSGGGGRYGGGGGG 361
>BP042402
Length = 409
Score = 60.1 bits (144), Expect = 1e-09
Identities = 42/78 (53%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Frame = -2
Query: 577 DLGGFTLAVDEAKPRDNQGSGGRSGG---GRSGGGRGGRFDSGRGGGRGRFG-SGGRGGD 632
DL G T + A R G+GGR+GG GR+GG GGR GR GGR G GGR G
Sbjct: 336 DLAG-TQGIAYAAGRGGLGAGGRAGGRAGGRAGGRAGGRA-GGREGGRAAGGREGGRAGA 163
Query: 633 RGGRGGRGG-GGRGGRGT 649
RGGR GRGG GRG GT
Sbjct: 162 RGGRRGRGGRRGRGQ*GT 109
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/49 (48%), Positives = 26/49 (52%)
Frame = -2
Query: 608 GRGGRFDSGRGGGRGRFGSGGRGGDRGGRGGRGGGGRGGRGTPLRAEGK 656
GRGG GR GGR +GGR G R G GR GG GGR R G+
Sbjct: 300 GRGGLGAGGRAGGR----AGGRAGGRAG--GRAGGREGGRAAGGREGGR 172
Score = 38.5 bits (88), Expect = 0.004
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -2
Query: 607 GGRGGRFDSGRGGGRGRFGSGGRGGDR-GGR-GGRGGGGRGGRGTPLRAEGKK 657
G +G + +GRGG G+GGR G R GGR GGR GG GGR A G++
Sbjct: 327 GTQGIAYAAGRGG----LGAGGRAGGRAGGRAGGRAGGRAGGREGGRAAGGRE 181
>AV413552
Length = 285
Score = 56.2 bits (134), Expect = 2e-08
Identities = 29/77 (37%), Positives = 49/77 (62%), Gaps = 1/77 (1%)
Frame = +1
Query: 409 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE- 467
K L+V NL +S+ +D+++ F CG V DV + +DGR KG+ V A+ AQ+A++
Sbjct: 19 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 198
Query: 468 YNGSELLQRPVRLDLAR 484
++ EL R +R++LA+
Sbjct: 199 FDTLELSGRILRVELAK 249
>TC20112 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (11%)
Length = 523
Score = 56.2 bits (134), Expect = 2e-08
Identities = 34/58 (58%), Positives = 37/58 (63%), Gaps = 7/58 (12%)
Frame = +2
Query: 596 SGGRSGGGRSG-GGRGG--RFDSGR----GGGRGRFGSGGRGGDRGGRGGRGGGGRGG 646
SGG S G G GGRGG ++D+GR GGGRGR G RGG RGGRGG GG GG
Sbjct: 341 SGGFSVGRGGGFGGRGGDRKYDTGRYSGGGGGRGRGGGSIRGGGRGGRGGGFGGRHGG 514
Score = 41.6 bits (96), Expect = 4e-04
Identities = 25/49 (51%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 611 GRFDSGRGGGRGRFGSGGRGGDRG---GRGGRGGGGRGGRGTPLRAEGK 656
G F GRGGG GGRGGDR GR GGGGRG G +R G+
Sbjct: 344 GGFSVGRGGG-----FGGRGGDRKYDTGRYSGGGGGRGRGGGSIRGGGR 475
Score = 40.8 bits (94), Expect = 7e-04
Identities = 29/52 (55%), Positives = 32/52 (60%), Gaps = 8/52 (15%)
Frame = +2
Query: 605 SGG---GRGGRFDSGRGGGRGRFGSGGRGGDRGGRGGRG-----GGGRGGRG 648
SGG GRGG F GRGG R ++ +G G GGRG RG GGGRGGRG
Sbjct: 341 SGGFSVGRGGGF-GGRGGDR-KYDTGRYSGGGGGRG-RGGGSIRGGGRGGRG 487
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/65 (46%), Positives = 32/65 (49%)
Frame = +2
Query: 579 GGFTLAVDEAKPRDNQGSGGRSGGGRSGGGRGGRFDSGRGGGRGRFGSGGRGGDRGGRGG 638
GGF + K + SGG G GR GG S RGGGR GGRG GG GG
Sbjct: 368 GGFGGRGGDRKYDTGRYSGGGGGRGRGGG-------SIRGGGR-----GGRG---GGFGG 502
Query: 639 RGGGG 643
R GGG
Sbjct: 503 RHGGG 517
>TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (65%)
Length = 1341
Score = 56.2 bits (134), Expect = 2e-08
Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 2/177 (1%)
Frame = +1
Query: 66 ESSSDDDSSSEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEEEVIAKK 125
ES +++ E E P+ V PA A P+ + DEEE +
Sbjct: 388 ESDEEEEELMEQENGKPETKTEDAKVAKTAKPAAAAGPSAKQVKIVDPKKDEEEADLDVS 567
Query: 126 PTKVVVPKKEESSSDEDSSSDEDSSSESDDEKPA-AKVAVPAKKAPAKNGSVTAPAKKAQ 184
V + + S+DEDS + D S+ ++E P AK KK P ++ S T + K
Sbjct: 568 SPDVSGYEDDLISADEDSDDESDDESDDEEETPTPAKKVDQGKKRPNESASKTPVSGK-- 741
Query: 185 PAPSSSSESEDDDSSEEDEPSAKQPKKEVAVKP-AVQKKKEESSSDDSSSESEDEKP 240
+ ++ E D + + PKK+ P + K K +S S++S KP
Sbjct: 742 --KAKNATPEKPDGKKNVHTATPHPKKQDGKTPNSFGKNKSPNSGGKFSNKSGGSKP 906
Score = 50.4 bits (119), Expect = 9e-07
Identities = 49/188 (26%), Positives = 72/188 (38%), Gaps = 7/188 (3%)
Frame = +1
Query: 229 DDSSSESEDEKPAVKVSAPSKVVPAAVKNGAADSDSSDSDSSSDEDDDKKKPATKVAKKL 288
DD S S + K A KV+ D D+SD S +E+++
Sbjct: 289 DDKSELSHNSKGASVYFCGYKVL-------TDDGDASDFSESDEEEEEL----------- 414
Query: 289 PAAAPIKKVEKSESSDDESSESSDEENDSKPATTTVAKPSAVKKSASSDSDDEDSSDSD- 347
+E+ + +E + +KPA A PSA + DE+ +D D
Sbjct: 415 --------MEQENGKPETKTEDAKVAKTAKPAAA--AGPSAKQVKIVDPKKDEEEADLDV 564
Query: 348 -----SEVKKDKMDVDE-SDSSEDSDEEDEKSTKTPQKKVKDVEMVDASSGKNAPKTPAA 401
S + D + DE SD D + +DE+ T TP KKV GK P A+
Sbjct: 565 SSPDVSGYEDDLISADEDSDDESDDESDDEEETPTPAKKV--------DQGKKRPNESAS 720
Query: 402 QTENEGSK 409
+T G K
Sbjct: 721 KTPVSGKK 744
Score = 42.7 bits (99), Expect = 2e-04
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 2/152 (1%)
Frame = +1
Query: 2 PKSSKKSATKVEAAAPVAAAPKSAKKAK--RAAEDEVEKQVSAKKQKIAEVAAKQKKETK 59
P++ + A + A P AAA SAK+ K +DE E + ++ E
Sbjct: 436 PETKTEDAKVAKTAKPAAAAGPSAKQVKIVDPKKDEEEADLDVSSPDVSGY------EDD 597
Query: 60 LQKVKKESSSDDDSSSEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEE 119
L ++S + D S+DE+ P P K + P + A P S ++++ E+
Sbjct: 598 LISADEDSDDESDDESDDEEETP--TPAKKVDQGKKRPNESASKTPVSGKKAKNATPEKP 771
Query: 120 EVIAKKPTKVVVPKKEESSSDEDSSSDEDSSS 151
+ T PKK++ + ++ +S
Sbjct: 772 DGKKNVHTATPHPKKQDGKTPNSFGKNKSPNS 867
Score = 42.4 bits (98), Expect = 2e-04
Identities = 55/230 (23%), Positives = 86/230 (36%), Gaps = 4/230 (1%)
Frame = +1
Query: 190 SSESEDDDSSEEDEPSAKQPKKEVAVKPAVQKKKEESSSDDSSSESEDEKPAVKVSAPS- 248
+ + + D SE DE + ++E K E+ ++D+ ++ KPA + PS
Sbjct: 358 TDDGDASDFSESDEEEEELMEQE--------NGKPETKTEDAKV-AKTAKPAA-AAGPSA 507
Query: 249 ---KVVPAAVKNGAADSDSSDSDSSSDEDDDKKKPATKVAKKLPAAAPIKKVEKSESSDD 305
K+V AD D S D S EDD + E SDD
Sbjct: 508 KQVKIVDPKKDEEEADLDVSSPDVSGYEDD--------------------LISADEDSDD 627
Query: 306 ESSESSDEENDSKPATTTVAKPSAVKKSASSDSDDEDSSDSDSEVKKDKMDVDESDSSED 365
ES + SD+E + T T AK K +E +S + KK K + + E
Sbjct: 628 ESDDESDDEEE----TPTPAK----KVDQGKKRPNESASKTPVSGKKAK-----NATPEK 768
Query: 366 SDEEDEKSTKTPQKKVKDVEMVDASSGKNAPKTPAAQTENEGSKTLFVGN 415
D + T TP K +D + ++ +P + + G F N
Sbjct: 769 PDGKKNVHTATPHPKKQDGKTPNSFGKNKSPNSGGKFSNKSGGSKPFNSN 918
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.298 0.120 0.311
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,591,790
Number of Sequences: 28460
Number of extensions: 114840
Number of successful extensions: 5045
Number of sequences better than 10.0: 641
Number of HSP's better than 10.0 without gapping: 1987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3511
length of query: 664
length of database: 4,897,600
effective HSP length: 96
effective length of query: 568
effective length of database: 2,165,440
effective search space: 1229969920
effective search space used: 1229969920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0135.11