BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0101.7
(629 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15102 similar to UP|Q7X9B3 (Q7X9B3) 9/13 hydroperoxide lyase, ... 38 0.006
TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-... 35 0.028
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%) 35 0.036
BP058107 34 0.062
AV411760 33 0.14
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li... 33 0.18
TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%) 33 0.18
TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, parti... 32 0.24
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 32 0.40
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 32 0.40
TC19436 similar to UP|Q93Y06 (Q93Y06) Receptor protein kinase-li... 31 0.52
TC8162 similar to UP|Q9XHE5 (Q9XHE5) Microtubule-associated prot... 31 0.52
TC16067 UP|Q9ZRY4 (Q9ZRY4) NDX1 homeobox protein, complete 31 0.52
BP066698 31 0.69
TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial ... 31 0.69
TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromos... 30 0.89
TC18419 30 0.89
TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , part... 30 1.2
TC14181 similar to UP|Q9FE06 (Q9FE06) Phi-1-like protein (AT5g64... 30 1.5
TC18670 similar to UP|Q93YA8 (Q93YA8) Calcium binding protein, p... 30 1.5
>TC15102 similar to UP|Q7X9B3 (Q7X9B3) 9/13 hydroperoxide lyase, partial
(68%)
Length = 1097
Score = 37.7 bits (86), Expect = 0.006
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Frame = +1
Query: 28 KSDPSQPSSVSKKASKKKRSRNPTCKVYKSQVKNSKAPNVPILEDVPDEEEINDEDSPVK 87
K+ P+ P++ SK +S K N T S AP P + +++ P
Sbjct: 436 KTPPNPPTNSSKPSSCKSSLPNTTPSSLSS------APPSPTTSPISTPSSPENQEKPAS 597
Query: 88 SPPDVVPDVVADVET----TGSKGSSAQETPGKDSTSHENSGDATTPNISVSSSSKDADP 143
+PP P + + T K SSA + P E S + P+ S SS+ P
Sbjct: 598 TPPSAPPRSTSSSSSSPINTPRKPSSATKAPASSPPGSELSLHHSPPSASRKSST---TP 768
Query: 144 KNGNSEGTNS 153
K +SE ++S
Sbjct: 769 KISSSEPSHS 798
>TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-like
protein, partial (41%)
Length = 522
Score = 35.4 bits (80), Expect = 0.028
Identities = 42/166 (25%), Positives = 63/166 (37%)
Frame = +2
Query: 69 ILEDVPDEEEINDEDSPVKSPPDVVPDVVADVETTGSKGSSAQETPGKDSTSHENSGDAT 128
IL + P + S + S P+ +TT + S TP K S S S
Sbjct: 44 ILPNKPLHSTLTKPPSQISSNPN---------KTTSTTSSPTSTTP-KPSPSPAPSSTLR 193
Query: 129 TPNISVSSSSKDADPKNGNSEGTNSEEPNQAPASVQNISDDASDDVPLTESFADSVAARM 188
P+ S +S+S + P T S +P+ AS S PLT S A S
Sbjct: 194 APSSSPASASPASSP-------TKSPKPSSPSASAPPSS------TPLTPSTATS----- 319
Query: 189 KKKRRVSSPEVTPTSSKKSKSSPITYKSRQASVKSKGKQKEDKTPT 234
SSP T +SS S + P ++ + +++ K P+
Sbjct: 320 -----ESSPTATSSSSSASPAPPTSFSALSRALELKALASSPSPPS 442
>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
Length = 1093
Score = 35.0 bits (79), Expect = 0.036
Identities = 49/201 (24%), Positives = 70/201 (34%), Gaps = 8/201 (3%)
Frame = +2
Query: 53 KVYKSQVKNSKAPNVPILEDVPDEEEINDEDSPVKSPPDVVPDVVADVETTGSKGS---- 108
K S K+ NV D++E E+ KS E +GSK
Sbjct: 8 KAELSDAKDESQENVAAPHKESDDDESKSEEEEDKSKAQKKTSKKIVKEGSGSKAGERTK 187
Query: 109 SAQETPGKDSTSHENSGDATTPNISVSSSSKDADPKNGNSEGTNSEEPNQAPASVQNISD 168
SA++TP K SS + D PK + T +E + A AS+
Sbjct: 188 SAKKTPVK------------------SSKNVDKTPKKSTPKQTAAEH-DSASASLSKSKQ 310
Query: 169 DASDDVPLTESFADSVAARMKKKRRVSSPEVTPTSSKKSKSSPITYKSRQASVKSKGKQK 228
AS K+K P+ +S K + T KS +A VK +GK K
Sbjct: 311 PASK----------------KRKTENEKPDTKGKASSKKQ----TDKSSKALVKDQGKSK 430
Query: 229 EDK----TPTEKKKRKTPVDV 245
K P+ + VD+
Sbjct: 431 SGKKAKAVPSREAMHAVVVDI 493
>BP058107
Length = 496
Score = 34.3 bits (77), Expect = 0.062
Identities = 23/67 (34%), Positives = 35/67 (51%), Gaps = 10/67 (14%)
Frame = +3
Query: 102 TTGSKGSSAQETPGK-------DSTSHENSGDATTPNISVSSSSKDADPKN---GNSEGT 151
T+GS S++ T + STS ++G A+T + S SS+S+ N GNS GT
Sbjct: 129 TSGSTSSTSTNTLSRITLSTSSASTSSASTGSASTSSASTSSASRSCGSSNSRKGNSLGT 308
Query: 152 NSEEPNQ 158
N P++
Sbjct: 309 NEGTPSK 329
>AV411760
Length = 420
Score = 33.1 bits (74), Expect = 0.14
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Frame = +1
Query: 129 TPNISVSSSSKDADPKNGNSEGTNSEEPNQAPASVQ--------------NISDDASDDV 174
TP+ S S + D +E NS A A + N SDD DD+
Sbjct: 40 TPSFSFSLAMPSEDSNIVKTEEENSVPKKTANAKKKPVTPASRSNAKKELNYSDD--DDM 213
Query: 175 PLTESFADSVAARMKKKRRVSSPEVTPTSSKKSKSSPITYKSRQASVKSKGKQKEDKTPT 234
P+ + +V+ +KKK+ V E + KK +P K R+ V QK D P
Sbjct: 214 PIAKR--TTVSKEVKKKKNVKEEEEKQETKKKVAETP---KKREKKVYDLPGQKRD--PP 372
Query: 235 EKK 237
E+K
Sbjct: 373 EEK 381
>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (31%)
Length = 1482
Score = 32.7 bits (73), Expect = 0.18
Identities = 29/104 (27%), Positives = 39/104 (36%), Gaps = 10/104 (9%)
Frame = +3
Query: 74 PDEEEINDEDSPVKSPPDVVPDVVADVETTGSKGSSAQETPGKDSTSHENSGDA------ 127
P + SPV +PP P E+ S +S G +TS +GD+
Sbjct: 699 PPSASTSPSPSPVSAPPAASP--APGAESPSSSPTSNSPAGGPTATSPSPAGDSPAGGPP 872
Query: 128 ----TTPNISVSSSSKDADPKNGNSEGTNSEEPNQAPASVQNIS 167
TT + S+S D P GT S P P+S N S
Sbjct: 873 APSPTTGDTPPSASGPDVSP-----SGTPSSLPADTPSSSSNNS 989
>TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%)
Length = 1231
Score = 32.7 bits (73), Expect = 0.18
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = +3
Query: 189 KKKRRVSSPEVTPTSSKKSKSSPITYKSRQASVKSKGKQKEDKTPTEKKKRKTPVDVEDS 248
KKK V S+ K S +S + +GK+ E+K +KKK K V D
Sbjct: 522 KKKEEVDHEGEKKHSTLLEKLHRSDSSSSSSSDEEEGKEGEEK-KKKKKKEKKEVKSTDE 698
Query: 249 ESDVEVGVQDIRSSDKKKFSGK 270
+ V V V + +KK F K
Sbjct: 699 NTSVPVEVDPAHAEEKKGFLDK 764
>TC14416 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (28%)
Length = 695
Score = 32.3 bits (72), Expect = 0.24
Identities = 34/127 (26%), Positives = 51/127 (39%), Gaps = 9/127 (7%)
Frame = +2
Query: 121 HENSGDATTPNISVSSSSKDADPKNGNSEGTNSEEPNQAPASVQNISDDASDDVPLTESF 180
H T PN SSS DP N NS P+++ +S S P T
Sbjct: 161 HPPHSSTTKPN--TSSSQLPPDPSNSNSH----------PSTLHPLS--PSPPQPTTALP 298
Query: 181 ADSVAARM----KKKRRVSSPEVTPTSSKKSKSSP-----ITYKSRQASVKSKGKQKEDK 231
S + R+ KK+ SP T +K + P T K+ ++ V K K+K++
Sbjct: 299 RPSSSPRLPTGPSKKKTTRSPSKTKKKEQKVSAKPKRVGNPTVKTLKSRVLKKEKEKKEI 478
Query: 232 TPTEKKK 238
T +K+
Sbjct: 479 TRNHQKR 499
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 31.6 bits (70), Expect = 0.40
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = +2
Query: 587 EEERREGDQSAAAPNVCNEEEEGSEECAEESAEGSGKDCSSEG 629
EE+ +GD+ + +EEEE ++ E+ EG GK S G
Sbjct: 773 EEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDEEGEGKSKSKSG 901
>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (40%)
Length = 620
Score = 31.6 bits (70), Expect = 0.40
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Frame = +3
Query: 140 DADPKNGNSEGTNSEEPNQAPASVQNISDDASDDVPLTESFADSVAARMKKKRRVSSPEV 199
D+D ++ + ++ E + S ++ SDD ++ P+ + A KKR S
Sbjct: 15 DSDDEDDEDDDSDEEMDDADSDSDESDSDDTDEETPVKK-------ADQGKKRANDSALK 173
Query: 200 TPTSSKKSKS--------SPITYKSRQASVKSKGKQKEDKTPTEK 236
TP S+KK+K+ + + K GK E K T K
Sbjct: 174 TPVSTKKAKNITPEKTDGKKTGHTATPHPGKKGGKNSESKAQTPK 308
>TC19436 similar to UP|Q93Y06 (Q93Y06) Receptor protein kinase-like protein,
partial (19%)
Length = 570
Score = 31.2 bits (69), Expect = 0.52
Identities = 23/91 (25%), Positives = 41/91 (44%), Gaps = 5/91 (5%)
Frame = +2
Query: 98 ADVETTGSKGSSAQETPGKDSTSHENSGDATTPNISVSSSSKDADPKNGNSEGTNSEEP- 156
A T + + TP + STS +S ATTP+ S S + N +S T + P
Sbjct: 257 ASSSKTSPSPAPSPRTPSRASTSSVSSRSATTPSPDPSLISHLSQTSN-HSSSTATTSPA 433
Query: 157 ----NQAPASVQNISDDASDDVPLTESFADS 183
+P++ ++S A+ P++ F+ +
Sbjct: 434 LSRRQSSPSTASSLSRSATTTSPVSSRFSST 526
>TC8162 similar to UP|Q9XHE5 (Q9XHE5) Microtubule-associated protein,
partial (10%)
Length = 976
Score = 31.2 bits (69), Expect = 0.52
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 14/125 (11%)
Frame = +1
Query: 56 KSQVKNSKAPNVPILEDVPDEEEINDEDSPVKSPPDVVPDVVADVETTGSKGSSAQETPG 115
KS N A N P ++ D N+ SP+ PP+ P + ++ S + P
Sbjct: 178 KSGCNNDDAGN-PQCNEISDNGP-NNSPSPISGPPEYTPQTCNNDDSGNSVTHPKERKPN 351
Query: 116 K------------DSTSHENSG--DATTPNISVSSSSKDADPKNGNSEGTNSEEPNQAPA 161
K D S + G +AT P S SS S P + S G S +
Sbjct: 352 KFQWLWKFGRNNADVISEKVGGAAEATKPTNSSSSQSNRPAPASSTSNGHCSSVSYGGES 531
Query: 162 SVQNI 166
QN+
Sbjct: 532 VDQNV 546
>TC16067 UP|Q9ZRY4 (Q9ZRY4) NDX1 homeobox protein, complete
Length = 3271
Score = 31.2 bits (69), Expect = 0.52
Identities = 19/94 (20%), Positives = 37/94 (39%)
Frame = +2
Query: 33 QPSSVSKKASKKKRSRNPTCKVYKSQVKNSKAPNVPILEDVPDEEEINDEDSPVKSPPDV 92
+PS +SKK K + + ++A + D+ ++++ D+D K+
Sbjct: 1898 EPSELSKKGGNLKEGMSENSSFPGTGQCTTRAEITNLGNDLSRQDQVEDKDIAGKTVSRG 2077
Query: 93 VPDVVADVETTGSKGSSAQETPGKDSTSHENSGD 126
D D + + S GK H +SG+
Sbjct: 2078 ARDFDKDCQNAETSSSDTSSAKGKSVIDHMDSGE 2179
>BP066698
Length = 442
Score = 30.8 bits (68), Expect = 0.69
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 65 PNVPILEDVPDEEEINDEDSPVKSPPDVVPDVVADVETTGS 105
P P L+DVP+ + N+ DS PP V P + + S
Sbjct: 127 PGFPHLQDVPETVKANEADSSSHIPPPVAPPAAMNEQRESS 5
>TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (4%)
Length = 493
Score = 30.8 bits (68), Expect = 0.69
Identities = 27/98 (27%), Positives = 43/98 (43%)
Frame = +2
Query: 84 SPVKSPPDVVPDVVADVETTGSKGSSAQETPGKDSTSHENSGDATTPNISVSSSSKDADP 143
SP P + P + + +S+ TP S+S +S + TP+ S SSS +
Sbjct: 185 SPSTPSPALTPSAKPPSA*STTSATSSATTPWSSSSS-SSSPSSGTPSPSSSSSPSSSPG 361
Query: 144 KNGNSEGTNSEEPNQAPASVQNISDDASDDVPLTESFA 181
+ +S T + AP S+ S S +PL SF+
Sbjct: 362 SSSSSSATALSLSSPAP-SITVSSSPRSGLLPLLRSFS 472
>TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromosome 3, P1
clone: MSJ11, partial (39%)
Length = 1403
Score = 30.4 bits (67), Expect = 0.89
Identities = 44/218 (20%), Positives = 82/218 (37%), Gaps = 2/218 (0%)
Frame = +3
Query: 34 PSSVSKKASKKKRSRNPTCKVYKSQVKNSKAPNVPILEDVPDEEEINDEDSPVKSPPDVV 93
P ++ + K K + P K + K S A +D EEE + DV
Sbjct: 318 PRRSARISEKVKVTPTPESDPPKKRGKRSSASK----KDASGEEEKEETK-------DVE 464
Query: 94 PDVVADVETTGSKGSSAQETPGKDSTSHENSGDATTPNISVSSSSKDADPKNGNSEGTNS 153
+ + + + D E +AT N ++DAD K G N+
Sbjct: 465 MQEAGETKDAVKENQDENKAEDTDVNQDEKKAEATDANQD-EKRAEDADVKEPTHPGENT 641
Query: 154 EEPNQAPASVQNISDDASDDVPLTESFADSVAARMKKKRRVSSPEVTPTSSKKSKSSPIT 213
+ PN + + A +++ ++ D A + V + + +KS+++P T
Sbjct: 642 DGPND-----EGKLNTADEELQASKEKVDDKGA--EGSDAVQNKDDGSGEPEKSEAAPTT 800
Query: 214 YKSRQASVKSKGKQKEDKTPTE--KKKRKTPVDVEDSE 249
++ V+ + K++ D+ E + K K V D E
Sbjct: 801 --EQKIEVEGENKEEHDRGIHESGEIKDKEGAKVNDEE 908
>TC18419
Length = 409
Score = 30.4 bits (67), Expect = 0.89
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Frame = +1
Query: 26 GLKSDPSQPSSVSKKASKKKRSRNPT--------CKVYKSQVKNSKAPNVPILEDVPDEE 77
G +S P A+++ S+ T K + S ++ SK P P P E+
Sbjct: 82 GKQSKSQTPLEAIHNATRRSNSKTTTDFPPVSSSSKEWLSSLRPSKNPTAP----PPPEQ 249
Query: 78 EINDEDSPVKSPPDVVPDVVADVETTGSKGSSAQETPGKDSTSHENSGDATTPNISVSSS 137
E D+D P+ PP P +++ P D S N + S S
Sbjct: 250 E--DDDGPLVGPPPPPP---------------SEQQPDDDGEMFGPSPPTPASNFNDSDS 378
Query: 138 SKDAD 142
+D+D
Sbjct: 379 EQDSD 393
>TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , partial (42%)
Length = 519
Score = 30.0 bits (66), Expect = 1.2
Identities = 28/105 (26%), Positives = 41/105 (38%), Gaps = 2/105 (1%)
Frame = +2
Query: 102 TTGSKGSSAQETPGKDSTSHENS--GDATTPNISVSSSSKDADPKNGNSEGTNSEEPNQA 159
T+GS S + G S S NS +TTP+ SSSS P T S P
Sbjct: 158 TSGSPPSDSPHRVGSSSESTSNSLASPSTTPSTP-SSSSSPTSPSTTKQISTPSPSPPPP 334
Query: 160 PASVQNISDDASDDVPLTESFADSVAARMKKKRRVSSPEVTPTSS 204
A+ + S ++++ S + R S + PT+S
Sbjct: 335 VATAASSSKNSAEPRRFKSSSPQNPTRNSHPYRISSHTDSPPTTS 469
>TC14181 similar to UP|Q9FE06 (Q9FE06) Phi-1-like protein
(AT5g64260/MSJ1_10), partial (84%)
Length = 1244
Score = 29.6 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 118 STSHENSGDATTPNISVSSSSKDADPKNGN 147
S H +S + TTPN S++S++ +P NGN
Sbjct: 577 SNPHISSPNRTTPNRSMASAAAHTEPINGN 488
>TC18670 similar to UP|Q93YA8 (Q93YA8) Calcium binding protein, partial
(41%)
Length = 329
Score = 29.6 bits (65), Expect = 1.5
Identities = 28/101 (27%), Positives = 44/101 (42%), Gaps = 6/101 (5%)
Frame = +1
Query: 49 NPTCKVYKSQVK---NSKAPNVPILEDVPDEEEINDEDSP---VKSPPDVVPDVVADVET 102
NPT ++++S K N P P + P+ E + +P V+SP +
Sbjct: 31 NPT-RLHRSPQKPTRNFLPPPHPTSKTRPNSRESSTASTPTATVRSP------------S 171
Query: 103 TGSKGSSAQETPGKDSTSHENSGDATTPNISVSSSSKDADP 143
T S SSA+ P S S +TP + SS+S+ + P
Sbjct: 172 TSSTASSARSDPACHRRSFSRSWKTSTPTATASSASRSSLP 294
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.308 0.126 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,403,985
Number of Sequences: 28460
Number of extensions: 97810
Number of successful extensions: 655
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of query: 629
length of database: 4,897,600
effective HSP length: 96
effective length of query: 533
effective length of database: 2,165,440
effective search space: 1154179520
effective search space used: 1154179520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0101.7