TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0070.9
         (437 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F...    50  7e-07
TC19357 weakly similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5...    37  0.008
BP042459                                                               28  2.3
BF177462                                                               28  3.0
TC13698 similar to GB|AAO63291.1|28950735|BT005227 At4g20000 {Ar...    27  5.1
BP037854                                                               27  6.6
TC14736 similar to UP|Q9LHS4 (Q9LHS4) Human RAN binding protein ...    27  6.6

>TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;}, partial (36%)
          Length = 880

 Score = 50.1 bits (118), Expect = 7e-07
 Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 28/228 (12%)
 Frame = +3

Query: 4   NNLPDWNTFYNECVEDFMNDTFVEDMMQQEMEF-----YQQ---------QQHANTVRPK 49
           NN P+WN          +NDT + D++   + F     +QQ         Q H     P+
Sbjct: 99  NNDPEWN----------LNDTVLNDLLTSFIHFDDTKPHQQLMDPNPIANQSHIEQFEPE 248

Query: 50  KTRRVIKRDREAGN------ERLM-----KDYFSK--NPVYTEELFRRRFRMRKHVFLRI 96
                 K+ R +         RL      KD++ +  +P + EE FRR FRM K  F  I
Sbjct: 249 FDEPPTKKPRRSDGTATTPPRRLWVKDRSKDWWERCSHPDFPEEEFRRSFRMSKATFEMI 428

Query: 97  VEALGSYNPYFLMSVDAVGRQGLSPLQKCTAAIRMLAYGSPADSVDEYVRIGESTAIECL 156
              L S     +   + + R+ +   Q+    I  LA G P   V +   +G ST  + +
Sbjct: 429 CRELDS----AVTKKNTMLREAIPVRQRVAVCIWRLATGDPLRLVAKRFGLGISTCHKLV 596

Query: 157 KNFVEGVCEVFGGQYLRRPNEEDMTRLLQWGES-RGFPGMLGSIDCMH 203
                 +  V   ++LR P+E  MT      E+  G P + G++   H
Sbjct: 597 LEVCSAIKTVLMPKFLRWPDEAAMTAAKSEFEALSGIPNIGGAMYTTH 740


>TC19357 weakly similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980),
           partial (16%)
          Length = 577

 Score = 36.6 bits (83), Expect = 0.008
 Identities = 30/118 (25%), Positives = 57/118 (47%)
 Frame = +2

Query: 311 KQKFAKRQEAARKDVERAFGVLQSRFAIVRGPSRWWHPNDMKSIIYACIILHNMIVEDER 370
           K+ F  R    R  + R+F VL++RF I+  P+  +     + I+ A  +LHN+I  ++R
Sbjct: 5   KELFNHRHYFLRGAILRSFTVLKARFPILI-PAPQYSFQIQRDIVIAACVLHNIIRREDR 181

Query: 371 NTYKGNFVYEQVNNDISDAEVLSGPIPAFRNMLERRAHQIEKSIHRQLQADLVEHIWD 428
           N +  N +     ++++  + L   +    +M E+ A  +  SI   +  D +   WD
Sbjct: 182 NDWLFNSLGGTPVDELTVLDELP-DVQLLSSMQEQLAFSLRDSIASAMWDDFLNK-WD 349


>BP042459 
          Length = 529

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -1

Query: 114 VGRQGLSPLQKCTAAIRMLAYGSPADSVDEYVRIGESTAIECLKNFVEGVCEVF-GGQYL 172
           +GR G       +   R+ +Y     S D Y+ +G++  ++ +   V G  EV+ GGQYL
Sbjct: 358 IGRNGFEETYLYSPGSRVESY-----SKDAYICVGQAAVLQPI---VLGPEEVWKGGQYL 203

Query: 173 RRPN 176
           + PN
Sbjct: 202 QNPN 191


>BF177462 
          Length = 417

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 19/51 (37%), Positives = 25/51 (48%), Gaps = 6/51 (11%)
 Frame = -2

Query: 318 QEAARKDVERAF------GVLQSRFAIVRGPSRWWHPNDMKSIIYACIILH 362
           + AA + V R F      G+  S FAI+ G   WW  N   S+I   +ILH
Sbjct: 194 ERAAEEGVGREFQGR*ERGIGGSEFAILEGWRVWWSLN--PSLIQVLLILH 48


>TC13698 similar to GB|AAO63291.1|28950735|BT005227 At4g20000 {Arabidopsis
          thaliana;}, partial (10%)
          Length = 419

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 10/15 (66%), Positives = 12/15 (79%)
 Frame = +2

Query: 30 MQQEMEFYQQQQHAN 44
          MQ +M+FYQQQ H N
Sbjct: 77 MQMQMQFYQQQPHMN 121


>BP037854 
          Length = 462

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 227 IMLEAVASQDLWIWHAFFGIA 247
           ++  +V + DLW W  FFG A
Sbjct: 282 LIFSSVLALDLWFWELFFGTA 220


>TC14736 similar to UP|Q9LHS4 (Q9LHS4) Human RAN binding protein 16-like,
           partial (5%)
          Length = 757

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 329 FGVLQSRFAIVRGPSRWWHPNDM 351
           FGV    F I+  P  WWHP ++
Sbjct: 185 FGVCILSFWIISFPPIWWHPGNL 253


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,233,215
Number of Sequences: 28460
Number of extensions: 94626
Number of successful extensions: 512
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of query: 437
length of database: 4,897,600
effective HSP length: 93
effective length of query: 344
effective length of database: 2,250,820
effective search space: 774282080
effective search space used: 774282080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)