BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058a.1
(1183 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP056651 133 7e-43
TC18710 108 4e-24
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 95 7e-20
TC13572 62 1e-10
CN825682 52 4e-07
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po... 44 2e-04
AV768875 38 0.008
BP041113 38 0.011
AV780221 35 0.070
TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane pro... 33 0.20
AV767121 32 0.45
TC15123 similar to UP|AAM51564 (AAM51564) Flavonoid 3', 5'-hydro... 31 1.3
TC19399 similar to UP|Q9FIZ7 (Q9FIZ7) 5-oxoprolinase (AT5g37830/... 29 3.8
TC16258 similar to UP|TPIS_COPJA (P21820) Triosephosphate isomer... 29 5.0
TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like... 29 5.0
TC19531 similar to UP|Q7XJ60 (Q7XJ60) At3g47690, partial (47%) 28 6.5
TC11676 28 6.5
TC16079 similar to UP|O04077 (O04077) Sucrose transport protein,... 28 6.5
TC11847 25 7.0
>BP056651
Length = 564
Score = 133 bits (335), Expect(2) = 7e-43
Identities = 65/142 (45%), Positives = 85/142 (59%)
Frame = +1
Query: 41 VVDRRMCGLL*GDSEFEWKATPAVNRGGGLLCIWNSKLFVLEESVDGPGFLGLMGRWGAA 100
++ + MC GD + +W+ PA R GGLLC+W +F +EE G GFLGL G+W
Sbjct: 28 LITKFMCSSFWGDGDMDWRMIPAKERAGGLLCVWKPSVFTVEECFLGEGFLGLKGKWKGV 207
Query: 101 QQRCVIINIYSPCDIDGKRAMWDALCAWRGTCDVGEWCLAGDFNAVRYAEERRGSSGVLS 160
CVIIN+YSPC KR +W+ L A R + WC+AGDFN+VR +EERRG+ G S
Sbjct: 208 S--CVIINVYSPCSRGEKRQLWEDLKALRRRLEEDIWCMAGDFNSVRRSEERRGTHGEGS 381
Query: 161 SHRREMREFNVFIANMDLVDIP 182
S EM EFN FI + + P
Sbjct: 382 SGAGEMEEFNDFIDEWNWMTSP 447
Score = 58.9 bits (141), Expect(2) = 7e-43
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = +3
Query: 176 MDLVDIPLTGRRFTWRRANDQAQSRIDRFLVSTSWCDVWPNCSHLV 221
M+L DIPL GR++TW R+N +A+SR+DRFLVS W W +C+ V
Sbjct: 426 MELDDIPLVGRKYTWVRSNGKARSRLDRFLVSHQWNTSWXDCAQYV 563
>TC18710
Length = 843
Score = 108 bits (271), Expect = 4e-24
Identities = 63/190 (33%), Positives = 95/190 (49%), Gaps = 3/190 (1%)
Frame = +2
Query: 459 GPDGFNFRFIQRFWDVLSGDVVKAVREFWMRGA*PRGSNASFIVLIPKVKIPQLLNDFRP 518
G DG N F Q+ DV+ V A+ F R P N + + LIPKV P+ +N FRP
Sbjct: 188 GMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRP 367
Query: 519 ISLIGCIYKVVPKLFAIRLRLVIGKVIDERQFTFVGNRNMLDSVVVLNEVMHEAK---VK 575
IS +YKV+ K+F RL+ + +I Q F+ R + D+++++ E H
Sbjct: 368 ISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGAL 547
Query: 576 KRPSIFFKVDYEKAYNSVEWGFLEYMMGRMNFCAKWIGWIMGCLNSATVSVLVNGSPSGE 635
R K+D KAY+ VEW FLE + F W+ IM ++ + + +NG +
Sbjct: 548 GRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPK 727
Query: 636 FHMEKGLRQG 645
++GLRQG
Sbjct: 728 LLPQRGLRQG 757
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 94.7 bits (234), Expect = 7e-20
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 3/180 (1%)
Frame = -3
Query: 362 GDLNSGFFHSTINWKRRADSIVGLM-VDGMWEDEPVRVKAAIHDFFQKKFKS--VAWLRP 418
GD N+ FFH++ +R + I+ + G+W + +V A ++F + S + +LR
Sbjct: 569 GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQYLRE 390
Query: 419 KLDGVQFSTITDRDNTELVGPFDEVEIKQAVWECGGTKSPGPDGFNFRFIQRFWDVLSGD 478
L + +TDR N +L EIK+AV+ G K+PG DG N F Q+ +++ D
Sbjct: 389 CLAPIP-KLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKND 213
Query: 479 VVKAVREFWMRGA*PRGSNASFIVLIPKVKIPQLLNDFRPISLIGCIYKVVPKLFAIRLR 538
V A+ +F+ G P N + + LIPK+ + + FRPIS IYKV+ K+ RL+
Sbjct: 212 VNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLK 33
>TC13572
Length = 534
Score = 62.4 bits (150), Expect(2) = 1e-10
Identities = 57/165 (34%), Positives = 77/165 (46%), Gaps = 5/165 (3%)
Frame = -1
Query: 890 GVV*WRSNMTMVFILANRLGGEMFRRRVLSGR*IGLMKLFLSRFGEVMQLHSGWMIGPGG 949
GVV NM M + LGG M R+ V+ GR +GL + + +G + SGW G G
Sbjct: 477 GVVLCWLNMVMGVVQIFHLGGGMCRQPVV-GRMVGLRRACIRFYGLEIIPGSGWRTGLGW 301
Query: 950 VLLGSSFIACIICPL*SVLLLRAV-----VTGIKTNGGGIYLGDGRWVCVSKAGWGRCCI 1004
G + I CI C *+ L+ +V V GI + GG L G W+ W
Sbjct: 300 GF*GRNTIGCITCRS*NGLVSMSVEVGARVFGIGISDGGDRLLVGNWIGCKP*AW----T 133
Query: 1005 LYLVPCFGRVRWTLGCGGQE*RVSLLYNQLIPLCRSLHWGLQILF 1049
L++ P F +V T GCG Q ++L Q + CR L L ILF
Sbjct: 132 LFVFP-FWQVSRTNGCGSQVKMAAILLIQRLFFCRYLVNNLPILF 1
Score = 21.6 bits (44), Expect(2) = 1e-10
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2
Query: 871 IELFWGSGCG 880
I+ FW SGCG
Sbjct: 533 IKHFWASGCG 504
>CN825682
Length = 626
Score = 52.4 bits (124), Expect = 4e-07
Identities = 31/98 (31%), Positives = 49/98 (49%), Gaps = 3/98 (3%)
Frame = -3
Query: 137 WCLAGDFNAVRYAEERRGSSGVLSSHRREMREFNVFIANMDLVDIPLTGRRFTWR---RA 193
W GDFN + + +E+ G+ ++ F F+ +L+D+ L G RFTW R
Sbjct: 300 WTCYGDFNEILHHQEKEGAR---DQDPTRIQVFRDFLDGANLMDLELKGCRFTWLSNLRN 130
Query: 194 NDQAQSRIDRFLVSTSWCDVWPNCSHLVLNRDVSDHCP 231
+ R+DR LV+ +W +PN + + L SDH P
Sbjct: 129 GLVTKERLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16
>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
polymerase-like protein, partial (3%)
Length = 530
Score = 43.9 bits (102), Expect = 2e-04
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = -3
Query: 327 EELVEMRDLLIEFWRVLRYQESFLCQKACMKWLVEGDLNSGFFHSTINWKRRADSIVGLM 386
+E+ + + L + WR +E F Q++ +KWL GD N+ FFH++ +R + I +
Sbjct: 318 QEIKQRKMRLKDLWR---QEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRERNRIERIK 148
Query: 387 -VDGMWEDEPVRVKAAIHDFFQKKFKS 412
+ G W + + + DF+ +KS
Sbjct: 147 DMQGTWVRSQLAINRDVPDFYPDIYKS 67
>AV768875
Length = 232
Score = 38.1 bits (87), Expect = 0.008
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +1
Query: 121 MWDALCAWRGTCDVGEWCLAGDFNAVRYAEERRGSSGVLSSHRREMREFNVFIANMDLVD 180
+W L R + + W L GD N + + + RG H + F + + +L+D
Sbjct: 13 LWQHLSTIRASISI-PWLLIGDMNEILFPSQVRGGE----FHPNRAQRFATVLDDCNLID 177
Query: 181 IPLTGRRFTWRR 192
+ + G +FTW R
Sbjct: 178 LGMVGGKFTWFR 213
>BP041113
Length = 503
Score = 37.7 bits (86), Expect = 0.011
Identities = 54/158 (34%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Frame = +2
Query: 941 SGWMIGPGGVLLGSSFIACIICPL*SVLLLRAVVTGI------KTNGGGIYLGDGRWVCV 994
SG IG VL G+ +IC ++ +V GI +GGG LG G WV +
Sbjct: 2 SGRKIG*EWVLFGTDTTGFLICLRRKGVVF*SVGGGITGCGLGNFHGGGH*LG-GSWVGL 178
Query: 995 S---KAGWGRCCILYLVPCFGRVRWTLGCGGQE*RVSLLYNQLIPLCRSLHWGLQILFLI 1051
S + G C L T GCG + + L QL CR HW +QILFL
Sbjct: 179 S***RI*VGCACQKGLK--------TSGCGFRVAPIQL--TQLTLFCRHQHWRIQILFLP 328
Query: 1052 LFGDRLRRRT*RRLPSGVCLIDSLAWIIC*SGE*LQTR 1089
FG+ *+RL VC II *S *L R
Sbjct: 329 PFGEP-*LLL*KRLRGDVCWAGCQPMII**SVR*LWIR 439
>AV780221
Length = 461
Score = 35.0 bits (79), Expect = 0.070
Identities = 33/118 (27%), Positives = 50/118 (41%), Gaps = 1/118 (0%)
Frame = +1
Query: 832 VIFCAVLLRGEGKLRG*NGLMSANLRMLVGWV*SALICLIELFWGSGCGDGELRGRPSGV 891
++F R K G*NG+ + R W C LFW SG G RG G+
Sbjct: 106 ILFLGGRWREGRK*LG*NGVRFVDPRTRGVWGFRTWACSTRLFWASGDGGCLRRGMDYGI 285
Query: 892 V*WRSNMTMVFILANRLGGEMFRRRVLS-GR*IGLMKLFLSRFGEVMQLHSGWMIGPG 948
++ M F +R+GG +RV G ++++ G+V++ SG G G
Sbjct: 286 RFC*LSIRMPFPKVHRVGGTTSTQRVSKMEAGDGCKEVYVEG*GKVLKSSSGMKTGWG 459
>TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane protein-like,
partial (10%)
Length = 879
Score = 33.5 bits (75), Expect = 0.20
Identities = 27/80 (33%), Positives = 31/80 (38%)
Frame = -2
Query: 976 GIKTNGGGIYLGDGRWVCVSKAGWGRCCILYLVPCFGRVRWTLGCGGQE*RVSLLYNQLI 1035
G K G G+ G G W C V R+ LG G Q R + Y QL
Sbjct: 782 GWKVYGLGLL*GGGIQALGRTY*WQICVTCLRVCHCRRIPMILGAGQQIRRANTQYKQLT 603
Query: 1036 PLCRSLHWGLQILFLILFGD 1055
L LQI F ILFG+
Sbjct: 602 SFYGLLQMSLQIPFFILFGN 543
>AV767121
Length = 525
Score = 32.3 bits (72), Expect = 0.45
Identities = 48/173 (27%), Positives = 68/173 (38%)
Frame = +3
Query: 788 GSISWYLLGGVFVWFRVCYLLCLCFFYLFSEFLAVLSGSAIRSCVIFCAVLLRGEGKLRG 847
GS LL F ++ C L CF +LFS L+ + C IF L+ + KL
Sbjct: 12 GSKKQCLLEVGFS*YKAC*LPYPCFSFLFSSCR*GLAKAVSA*CAIFYGEALKMKTKLPR 191
Query: 848 *NGLMSANLRMLVGWV*SALICLIELFWGSGCGDGELRGRPSGVV*WRSNMTMVFILANR 907
*NG S + + L W + L + G+ G G * + N ++ IL
Sbjct: 192 *NGRTSVSPKSLGVWGSRIFLLLTKPCLGNEDGGI*RNLTVFGGG*LKLN--LITILVVL 365
Query: 908 LGGEMFRRRVLSGR*IGLMKLFLSRFGEVMQLHSGWMIGPGGVLLGSSFIACI 960
LGG F V +G ++ S G ++ SG IG F CI
Sbjct: 366 LGGMTFCPCVRKMLMVGSLRG*KSWLGREIKQSSGLRIGLVQGYYPQGFAGCI 524
>TC15123 similar to UP|AAM51564 (AAM51564) Flavonoid 3', 5'-hydroxylase,
partial (24%)
Length = 592
Score = 30.8 bits (68), Expect = 1.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 981 GGGIYLGDGRWVCVSKAGWGRCCILYLVPC 1010
GGG LG G +C+ WG CIL + C
Sbjct: 166 GGGFVLGRGWGLCLFSTFWGLWCILMIGSC 255
>TC19399 similar to UP|Q9FIZ7 (Q9FIZ7) 5-oxoprolinase (AT5g37830/K22F20_70),
partial (7%)
Length = 499
Score = 29.3 bits (64), Expect = 3.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Frame = +1
Query: 105 VIINIYSPCDID-------GKRAMWDALCAWRGTCDVGEWC 138
V+++ PC + G R M+D L WR CDV + C
Sbjct: 265 VVVDGVLPCKVSFFSARSPGNRFMFDVLLMWRPNCDVMD*C 387
>TC16258 similar to UP|TPIS_COPJA (P21820) Triosephosphate isomerase,
cytosolic (TIM) , partial (31%)
Length = 622
Score = 28.9 bits (63), Expect = 5.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 986 LGDGRWVCVSKAGWGRCCILYLVPCF 1011
+G VC + +G CC+ L+PCF
Sbjct: 379 IGSQELVCCLSSCFGNCCV*ALIPCF 302
>TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like
arabinogalactan-protein 9 {Arabidopsis thaliana;},
partial (38%)
Length = 942
Score = 28.9 bits (63), Expect = 5.0
Identities = 13/45 (28%), Positives = 21/45 (45%)
Frame = -3
Query: 200 RIDRFLVSTSWCDVWPNCSHLVLNRDVSDHCPLLMRQVVADWGPK 244
R+ ++V SW +W +C + R +CP R V GP+
Sbjct: 244 RVKPWVVELSWLSIWVSCWDSLRRRMRVVYCPAFSRIAVKFTGPE 110
>TC19531 similar to UP|Q7XJ60 (Q7XJ60) At3g47690, partial (47%)
Length = 709
Score = 28.5 bits (62), Expect = 6.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1140 CSLTLEGMICSGAGYWRFGSLALGRCGWCVM 1170
CSL G + S + +W F + R GWCV+
Sbjct: 262 CSLWWWGFLFSCSLFWFFNGVQYWRDGWCVL 354
>TC11676
Length = 679
Score = 28.5 bits (62), Expect = 6.5
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 2/29 (6%)
Frame = +1
Query: 797 GVFVW--FRVCYLLCLCFFYLFSEFLAVL 823
G +VW FR + LCFF+LFS L ++
Sbjct: 463 G*YVWHLFRTLIISWLCFFFLFSNTLIII 549
>TC16079 similar to UP|O04077 (O04077) Sucrose transport protein, partial
(18%)
Length = 573
Score = 28.5 bits (62), Expect = 6.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 990 RWVCVSKAGWGRCCILYLVP 1009
+W+C G+GRCCI Y+ P
Sbjct: 392 KWICF---GFGRCCIRYISP 442
>TC11847
Length = 460
Score = 25.0 bits (53), Expect(2) = 7.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -2
Query: 1126 GWRQRFQRRQRSTFCSLTLEGMICSGAGYWRFG 1158
G R RR C + ++C G G W FG
Sbjct: 249 GGAMRQGRRSFGLRCDSSENWLLCHGRGRWNFG 151
Score = 21.6 bits (44), Expect(2) = 7.0
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3
Query: 1165 CGWCVM 1170
CGWCVM
Sbjct: 137 CGWCVM 120
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.339 0.151 0.528
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,740,342
Number of Sequences: 28460
Number of extensions: 448914
Number of successful extensions: 3949
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 3851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3943
length of query: 1183
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1083
effective length of database: 2,051,600
effective search space: 2221882800
effective search space used: 2221882800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0058a.1