TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0400a.3
         (419 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE555567 similar to GP|18087557|gb AT3g27930/K24A2_2 {Arabidopsi...   268  4e-72
BE058948                                                              165  3e-41
TC234641 weakly similar to UP|Q8W106 (Q8W106) AT3g27930/K24A2_2,...    43  2e-04
BG511631 similar to GP|18087557|gb| AT3g27930/K24A2_2 {Arabidops...    34  0.11
BG882216                                                               33  0.24
TC232840                                                               32  0.70
TC221833 UP|Q9LWW4 (Q9LWW4) ESTs C26056(C11550), partial (10%)         30  2.6
TC215922                                                               29  3.5
TC226697 weakly similar to UP|Q7RHM7 (Q7RHM7) Cyclophilin-RNA in...    29  4.5
BU090749                                                               28  5.9
TC204738                                                               28  5.9
TC228148 similar to UP|Q7YXC8 (Q7YXC8) C. elegans GRD-1 protein ...    28  5.9

>BE555567 similar to GP|18087557|gb AT3g27930/K24A2_2 {Arabidopsis thaliana},
           partial (28%)
          Length = 422

 Score =  268 bits (684), Expect = 4e-72
 Identities = 127/139 (91%), Positives = 134/139 (96%)
 Frame = +2

Query: 108 SCAYYPRYGFGAFGVFPLLLRKREFSEDYGLMGLRYGSGNLSFGVTLMPFAKKDELPKSA 167
           +CAYYP+YGFGAFGVFPLLL+KRE S+DYGLMGLRYGSGNLSFGVTL+PFA KDELPKSA
Sbjct: 5   ACAYYPKYGFGAFGVFPLLLKKRESSQDYGLMGLRYGSGNLSFGVTLLPFAMKDELPKSA 184

Query: 168 WLVSKMGRLTAGVQYEPQHGNAKLSNLMNWSCAMAYGVGSGSPLSPSFNFSLELVKSSQF 227
           WLVSKMGRLTAGVQYEPQ GNAKLSNLMNWSCAM YGVGSGSPL PSFNF+LELVKSSQF
Sbjct: 185 WLVSKMGRLTAGVQYEPQQGNAKLSNLMNWSCAMGYGVGSGSPLCPSFNFNLELVKSSQF 364

Query: 228 VASFYQHMVVQRRVKNPLE 246
           +ASFYQHMVVQRRVKNPLE
Sbjct: 365 IASFYQHMVVQRRVKNPLE 421


>BE058948 
          Length = 411

 Score =  165 bits (418), Expect = 3e-41
 Identities = 79/100 (79%), Positives = 87/100 (87%)
 Frame = +3

Query: 2   FRKEVKPPPPPLVVLVPPLFDFPPLAARNRMLESSYDVVFGKLALRCLFNDYFQSPKHFT 61
           F +E  PPPPP VVLVPPLFDFPPLAARNRML SSYDVVFGKLAL  LF DYF   ++FT
Sbjct: 57  FSREPAPPPPP-VVLVPPLFDFPPLAARNRMLHSSYDVVFGKLALTSLFEDYFHQARNFT 233

Query: 62  TRIMFKPIDEPHVDLIATVSGPLDHKPEESITGNALFRWQ 101
           TRIM KPI++PHVDLIATVSGPLDHKP++SI G+ALFRWQ
Sbjct: 234 TRIMLKPIEDPHVDLIATVSGPLDHKPKDSIAGDALFRWQ 353


>TC234641 weakly similar to UP|Q8W106 (Q8W106) AT3g27930/K24A2_2, partial
           (16%)
          Length = 384

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 19/22 (86%), Positives = 22/22 (99%)
 Frame = +3

Query: 329 ADGQIQYGFGIQSESLREASFQ 350
           ADG++QYGFGIQSESLREAS+Q
Sbjct: 12  ADGKMQYGFGIQSESLREASYQ 77


>BG511631 similar to GP|18087557|gb| AT3g27930/K24A2_2 {Arabidopsis
           thaliana}, partial (3%)
          Length = 297

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 214 SFNFSLELVKSSQFVASFYQHMVVQRRV 241
           S     + + + QF+ASFYQHM VQRRV
Sbjct: 152 SILLKFQSLNNLQFIASFYQHMAVQRRV 69


>BG882216 
          Length = 398

 Score = 33.1 bits (74), Expect = 0.24
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 370 VVSYNILGVDSASKHQDLYSNIRHSFQN 397
           V SYNILG  +AS+H DLY N+   + N
Sbjct: 302 VASYNILGGRNASQHSDLYVNVPSRYIN 385


>TC232840 
          Length = 449

 Score = 31.6 bits (70), Expect = 0.70
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = +1

Query: 8  PPPPPLVVLVPPLFDFPPLAAR 29
          P PPP++ L+PP F F PL  R
Sbjct: 76 PLPPPMLHLLPPFFSFSPLCIR 141


>TC221833 UP|Q9LWW4 (Q9LWW4) ESTs C26056(C11550), partial (10%)
          Length = 542

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 6/43 (13%)
 Frame = -3

Query: 8   PPPPPLVV------LVPPLFDFPPLAARNRMLESSYDVVFGKL 44
           PPPPP V+      L+ P+   PP  A N+ +E+  + +   L
Sbjct: 186 PPPPPFVLLLVARTLIDPVLSTPPCFALNKKMETELEPLLESL 58


>TC215922 
          Length = 802

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 6   VKPPPPPLVVLVPPLFDFPP 25
           + PP PP  VL+PPLF F P
Sbjct: 139 LSPPFPPQSVLLPPLFSFLP 198


>TC226697 weakly similar to UP|Q7RHM7 (Q7RHM7) Cyclophilin-RNA interacting
           protein, partial (11%)
          Length = 488

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 18/51 (35%), Positives = 24/51 (46%), Gaps = 2/51 (3%)
 Frame = +2

Query: 3   RKEVKPPPPPLVVL--VPPLFDFPPLAARNRMLESSYDVVFGKLALRCLFN 51
           R+ + PP PP   L   PP+F  PPL + + +L  S  V    L    L N
Sbjct: 152 RRHLAPPLPPPSSLRPSPPVFSPPPLLSSSDLLSGSEHVALRPLDFHFLSN 304


>BU090749 
          Length = 405

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 11/46 (23%), Positives = 24/46 (51%)
 Frame = -2

Query: 312 SWWKPSFTFSISATRDRADGQIQYGFGIQSESLREASFQSIFTILN 357
           +WW      + +   + A+G++ +  G+QS SL E      F++++
Sbjct: 404 AWWLEFSEVASALGEEEAEGEVDHKTGLQSSSLMEERIWKAFSMVS 267


>TC204738 
          Length = 940

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 86  HKPEESITGNALFRWQRILRMRSCAYYPRYGFGAFGVFPLLLRKREFSEDYGLMGL 141
           H+P E +  N  F W+R    R C +  R G     + P  L +  FS   GL+G+
Sbjct: 260 HRPNELVAPNKGFLWRRWRSSRVCIHRRRRGEPVRFLLPPKLLQLRFS---GLVGI 102


>TC228148 similar to UP|Q7YXC8 (Q7YXC8) C. elegans GRD-1 protein
           (Corresponding sequence R08B4.1b), partial (3%)
          Length = 1180

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 19/52 (36%), Positives = 25/52 (47%), Gaps = 9/52 (17%)
 Frame = -1

Query: 8   PPPPPLVVLV---------PPLFDFPPLAARNRMLESSYDVVFGKLALRCLF 50
           PPPPPL++L+         PPL   PP  A   +L     ++F K A   LF
Sbjct: 568 PPPPPLLLLLLPPPPPLPPPPLPPLPPFDASAEVLRL---ILFKKSAAAFLF 422


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,813,624
Number of Sequences: 63676
Number of extensions: 274270
Number of successful extensions: 2447
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2388
length of query: 419
length of database: 12,639,632
effective HSP length: 100
effective length of query: 319
effective length of database: 6,272,032
effective search space: 2000778208
effective search space used: 2000778208
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)