BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0369a.2
(1602 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 137 5e-32
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 135 2e-31
NP004897 gag-protease polyprotein 131 2e-30
CF920770 108 1e-23
TC232995 75 3e-13
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 65 2e-10
AW704309 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 61 5e-09
AI966222 57 7e-08
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 54 6e-07
BM143109 52 2e-06
TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F2... 51 4e-06
CF922226 51 4e-06
TC216023 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F2... 46 1e-04
AI959950 45 3e-04
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 44 6e-04
TC206105 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-in... 41 0.005
BI425121 41 0.005
CA852083 40 0.011
TC217412 similar to UP|Q6L724 (Q6L724) ATP-dependent RNA helicas... 39 0.018
TC218149 similar to UP|Q70I27 (Q70I27) SAR DNA-binding protein-l... 39 0.024
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 137 bits (344), Expect = 5e-32
Identities = 119/445 (26%), Positives = 202/445 (44%), Gaps = 16/445 (3%)
Frame = +1
Query: 3 SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
+F D+ W ++ G+E P +DT+GK P + T ++ +L + KA L +
Sbjct: 88 AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNALFN 267
Query: 57 AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
+ ++ I AK ++ LK +HEG KVK S+ L K+E+ M+ E I +
Sbjct: 268 GVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 447
Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
+ L + T + V +I+R LP+ + VT+IE +D+ NM ++ELI L+
Sbjct: 448 MNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 627
Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
EL S+ + K K++A S E EE+E + +++ + + L+ K+
Sbjct: 628 TFELGLSDRTEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVLLGKQF 774
Query: 237 NRIWKHRQSKFKGSGR------AKGK--YESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
N++ + K R KG + S +K S K + C C+ GH K++CP
Sbjct: 775 NKVLNRMDRRQKPHVRNIPFDIRKGSEYQKKSDEKPSHSKGIQCHGCEGYGHIKAECPTH 954
Query: 289 KKDKKPKKHFKTKKSLMV-TFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSES 346
K K +K L V D++ESE + DSD +V L + ++++ D+DSE
Sbjct: 955 LK--------KQRKGLSVCRSDDTESEQESDSDRDVNALTG----RFESAEDSSDTDSEI 1098
Query: 347 EGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKII 406
D EL + ++ K +L +LKK ++ + HE+ I
Sbjct: 1099TFD----------------ELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEI 1230
Query: 407 SDLKNENHALVNSNSVLKNQIAKLE 431
S+LK E L NS L+N ++
Sbjct: 1231SELKGEVGFL---NSKLENMTKSIK 1296
Score = 94.4 bits (233), Expect = 4e-19
Identities = 149/480 (31%), Positives = 207/480 (43%), Gaps = 3/480 (0%)
Frame = +2
Query: 1113 KKN*INSPRTMFGA**RSLRVSMLLERNGYSETS*MRKEK*SETRQG*LVKATASRKK*T 1172
KKN NS FG+* R M L +G S T M+K * ETR L+KAT K *T
Sbjct: 3257 KKNWSNSKGMKFGS*FLDPRELM*LAPSGSSRTKPMKKVL*PETRPDLLLKATLRLKV*T 3436
Query: 1173 TLKHLLR*QDWRQLDC*SPSQ*ITI*FYIRWT*RVPS*MVISQRKSMFINPQVLKMKRNQ 1232
+K D DC + RW *R *M +K M+ + + L ++ Q
Sbjct: 3437 LMKLSPLLLDLSPSDCYLV*LASSNSSCTRWM*RARF*MDT*MKKPMWSSQRDL*IQLIQ 3616
Query: 1233 TMCSN*RNHSTV*SKLPEHGMRDLAHSFWRMNL*GVK*IQLFFARLIKMIS*LCKFMLMI 1292
M + R S *SKL E GM+ S + + +L + + * ++MLM
Sbjct: 3617 IMYTGSRRLSMD*SKLQELGMKG*QSSLLSKGIGREELTRLSLSNKMLKT***HRYMLMT 3796
Query: 1293 LYLVLLINLYAKNFLR*CRLNLR*V*WEN*STFWEYKLIKHQKEHISIRASTLKNF*RSS 1352
L L C LNLR*V E+* FW+ K + + + S +AS + RS
Sbjct: 3797 LCLEGCRMRCFDILSNRCNLNLR*VLLES*LIFWDSK*SRWKTPYSSHKASMQRTLSRS- 3973
Query: 1353 ICWNLQWPRLQCILHAFW--RKKIKVVKYVRSSIVE**VH-FYT*LHLGQTYYLVFTYVL 1409
+ W + P ++ LH +K+K+ + E *+ +Y * T + +V
Sbjct: 3974 LGWKM--PAIKEHLHLLT*SCQKMKLAPVLIKVCTEA*LGAYYI*QLADLTSPMQ*VFVQ 4147
Query: 1410 VSNQIQGKPT*LLLRGS*GI*KAPLTLA*CIRKHQSTSFQVIVMLIMLEIEQREKVLLEI 1469
I T*+ R * +* AP+T+ C Q + IVMLI LE++ EK LL
Sbjct: 4148 DIKPILR*VT*IK*REF*NM*MAPVTMGLCTVIVQIQCWLGIVMLIGLEVQMTEKALLVD 4327
Query: 1470 VNFWEAI*SHGQARGNQPLHYQLQRQNISQQQYAALRCSG*NISWRIIRSLRAISQFIVI 1529
V+ WE I HG AR Y L +Q+I QQ+ A G*+ R S + V
Sbjct: 4328 VSIWEPILFHGSARSRTVCPYLLLKQSILQQEAAVHN*FG*SRC*RSTMSNKMS*HCTVT 4507
Query: 1530 TLLQSR*ARILSCIQGQSTLR*SITSLEIMCRRAYFL*SLLILTINGQISLQSP*QRIDL 1589
T + +IL STL IT LEI+ S+L L QI Q +I L
Sbjct: 4508 T*VLLIFLKILFNTAEPSTLTLDITILEILLMIKLSHWSMLTLRNK*QIFSQRHWMQISL 4687
Score = 35.4 bits (80), Expect = 0.20
Identities = 30/89 (33%), Positives = 49/89 (54%)
Frame = +3
Query: 829 SAKREGL*DCACQK*PWWRV*E*QV*ESV*FLWNCT*FLLSQNSSTKWCC*EEEQNSSGD 888
++KR+ L Q+*PW RV*+ QV + + +* L S ++TKW *+E+Q+ +
Sbjct: 2421 TSKRKRLCHQENQE*PWQRV*KQQVY*ILHI*RHHS*VLCSHYTTTKWHS*KEKQDFARS 2600
Query: 889 G*NHAPRNWHG*ALLGRGSKYNMLHSEQN 917
* HA LG +++MLH +Q+
Sbjct: 2601 C*GHASCQRTSL*SLG*SHEHSMLHPQQS 2687
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 135 bits (339), Expect = 2e-31
Identities = 117/444 (26%), Positives = 200/444 (44%), Gaps = 15/444 (3%)
Frame = +1
Query: 3 SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
+F D+ W ++ G+E P +DT+GK P + T ++ +L + KA L +
Sbjct: 88 AFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNALFN 267
Query: 57 AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
+ ++ I AK ++ LK++HEG KVK S+ L K+E+ M+ E I +
Sbjct: 268 GVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 447
Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
+ L + T + V +I+R LP+ + VT+IE +D+ NM ++ELI L+
Sbjct: 448 MNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQ 627
Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
EL S+ + K K++A S E EE+E + +++ + + L+ K+
Sbjct: 628 TFELGLSDRAEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVLLGKQF 774
Query: 237 NRIWKHRQSKFKG-------SGRAKGKYES-SGQKKSSIKEVTCFECKESGHYKSDCPKL 288
N++ + K R KY+ S K S K + C C+ GH ++CP
Sbjct: 775 NKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTH 954
Query: 289 KKDKKPKKHFKTKKSLMVTFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSESE 347
K K +K L V ++ESE + DSD +V L I + ++++ D+DSE
Sbjct: 955 LK--------KHRKGLSVCQSDTESEQESDSDRDVNALTGIFE----TAEDSSDTDSEIT 1098
Query: 348 GDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIIS 407
D EL + + K +L +LKK ++ + H++ IS
Sbjct: 1099FD----------------ELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEIS 1230
Query: 408 DLKNENHALVNSNSVLKNQIAKLE 431
+LK E L NS L+N ++
Sbjct: 1231ELKGEVGFL---NSKLENMTKSIK 1293
Score = 89.7 bits (221), Expect = 9e-18
Identities = 146/486 (30%), Positives = 206/486 (42%), Gaps = 9/486 (1%)
Frame = +2
Query: 1113 KKN*INSPRTMFGA**RSLRVSMLLERNGYSETS*MRKEK*SETRQG*LVKATASRKK*T 1172
KKN NS G+* LR M L +G S T M+K * ETR L+KAT K *T
Sbjct: 3254 KKNWSNSKGMKSGS*FLGLRELM*LAPSGSSRTKPMKKVS*PETRPDWLLKATLRLKV*T 3433
Query: 1173 TLKHLLR*QDWRQLDC*SPSQ*ITI*FY------IRWT*RVPS*MVISQRKSMFINPQVL 1226
++ L + D SPS +* RW *R *M +KSM+ + + L
Sbjct: 3434 LMRLLPQLLDL------SPSDYYLV*LVSSNSSCTRWM*RAHF*MDT*MKKSMWSSQRDL 3595
Query: 1227 KMKRNQTMCSN*RNHSTV*SKLPEHGMRDLAHSFWRMNL*GVK*IQLFFARLIKMIS*LC 1286
+ + Q M + R S *SKL E GM+ S + + + + + *L
Sbjct: 3596 QTRLIQIMYTGSRRLSMD*SKLQELGMKG*QSSLLSKGIGREELTRPSLSNKMLKT**LH 3775
Query: 1287 KFMLMILYLVLLINLYAKNFLR*CRLNLR*V*WEN*STFWEYKLIKHQKEHISIRASTLK 1346
++MLM L L C LNLR*V E+* FW++K + + + S +A +
Sbjct: 3776 RYMLMTLCLEGCRMRCFDILFNRCNLNLR*VLLES*LIFWDFK*SRWRTPYSSHKAGMQR 3955
Query: 1347 NF*RSSICWNLQWPRLQCILHAFW---RKKIKVVKYVRSSIVE**VHFYT*LHLGQTYYL 1403
RS + W + P ++ LH ++ + ++ ** +Y * T +
Sbjct: 3956 TLSRS-LGWRM--PVIKGHLHLLT*SCQRMKQAPVLIKVCTEA**GAYYI*QLADPTSPM 4126
Query: 1404 VFTYVLVSNQIQGKPT*LLLRGS*GI*KAPLTLA*CIRKHQSTSFQVIVMLIMLEIEQRE 1463
+V I T*L R * +* A +T+ C Q + IVMLI LE++ E
Sbjct: 4127 Q*VFVQDIKPIPR*VT*LK*REF*NM*MALVTMGLCTVIVQIQCWLGIVMLIGLEVQMTE 4306
Query: 1464 KVLLEIVNFWEAI*SHGQARGNQPLHYQLQRQNISQQQYAALRCSG*NISWRIIRSLRAI 1523
K LL + WE HG AR Y Q+ +I QQ+ A G*+ R S +
Sbjct: 4307 KALLVDASIWETTLFHGSARSRTVCPYLQQKPSILQQEAAVHS*FG*SRC*RSTMSNKMS 4486
Query: 1524 SQFIVITLLQSR*ARILSCIQGQSTLR*SITSLEIMCRRAYFL*SLLILTINGQISLQSP 1583
V T + +IL STL IT EI+ *S+L L QI Q
Sbjct: 4487 *HCTVTT*VLLIFLKILFNTAEPSTLTLDITISEILLMIK*SH*SMLTLRNK*QIFSQRL 4666
Query: 1584 *QRIDL 1589
+I L
Sbjct: 4667 WMQISL 4684
Score = 35.0 bits (79), Expect = 0.26
Identities = 34/121 (28%), Positives = 57/121 (47%)
Frame = +3
Query: 829 SAKREGL*DCACQK*PWWRV*E*QV*ESV*FLWNCT*FLLSQNSSTKWCC*EEEQNSSGD 888
++KRE L Q+*PW R+*+ QV + + +* L S ++T+W *EE+Q+ +
Sbjct: 2418 TSKRERLCHQENQE*PWQRI*KQQVH*ILHI*RHHS*VLCSHYTTTEWDS*EEKQDFARG 2597
Query: 889 G*NHAPRNWHG*ALLGRGSKYNMLHSEQNLCETNSE*DSL*IVEEHKTQHFLFSSFWLCL 948
HA LG +++MLH +Q+ E +* +E + W +
Sbjct: 2598 CSGHASCQRTSL*SLG*SHEHSMLHPQQSHTEKRDSNHPV*NLEREEAICQALPHLWKSM 2777
Query: 949 L 949
L
Sbjct: 2778 L 2780
>NP004897 gag-protease polyprotein
Length = 1923
Score = 131 bits (330), Expect = 2e-30
Identities = 117/445 (26%), Positives = 200/445 (44%), Gaps = 16/445 (3%)
Frame = +1
Query: 3 SFFLGFDADLWDIIVDGYERP--VDTDGKKI----PRSEMTADQKKLYSQHHKARAILLS 56
+F D+ W ++ +E P +DT+GK P + T ++ +L + KA L +
Sbjct: 88 AFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDELALGNSKALNALFN 267
Query: 57 AISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMF 116
+ ++ I AK ++ LK +HEG KVK S+ L K+E+ M+ E I +
Sbjct: 268 GVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHDFH 447
Query: 117 SRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISILK 176
+ L + T + V +I+R LP+ + VT+IE +D+ N+ ++ELI L+
Sbjct: 448 MNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNLRVDELIGSLQ 627
Query: 177 CHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRL 236
EL S+ + K K++A S E EE+E + +++ + + L+ K+
Sbjct: 628 TFELGLSDRTEKKSKNLAFVSNDE-----------GEEDEYDLDTDEGLTNAVVLLGKQF 774
Query: 237 NRIWKHRQSKFKGSGR------AKGK--YESSGQKKSSIKEVTCFECKESGHYKSDCPKL 288
N++ + K R KG + S +K S K C C+ GH K++CP
Sbjct: 775 NKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGFQCHGCEGYGHIKAECPTH 954
Query: 289 KKDKKPKKHFKTKKSLMV-TFDESESE-DVDSDGEVQGLMAIVKDKGAESKEAVDSDSES 346
K K +K L V D++ESE + DSD +V L + ++++ D+DSE
Sbjct: 955 LK--------KQRKGLSVCRSDDTESEQESDSDRDVNALTG----RFESAEDSSDTDSEI 1098
Query: 347 EGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKII 406
D EL + ++ K +L +LKK ++ + HE+ I
Sbjct: 1099TFD----------------ELATSYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEI 1230
Query: 407 SDLKNENHALVNSNSVLKNQIAKLE 431
S+LK E L NS L+N ++
Sbjct: 1231SELKGEVGFL---NSKLENMTKSIK 1296
>CF920770
Length = 581
Score = 108 bits (271), Expect = 1e-23
Identities = 61/186 (32%), Positives = 102/186 (54%), Gaps = 13/186 (6%)
Frame = -2
Query: 9 DADLWDIIVDGYERP-----VDTDGKKI--------PRSEMTADQKKLYSQHHKARAILL 55
D ++W+ I G P V DG PR + + +K + KA+ I+
Sbjct: 574 DLNIWEAIEIGPYIPTTVERVSIDGSSSSESITIEKPRDRWSEEDRKRVQYNLKAKNIIT 395
Query: 56 SAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEM 115
SA+ +EY ++++ + AK ++D+L+++HEG VK S+ +L +YE F M NE+I+ M
Sbjct: 394 SALGMDEYFRVSNCKSAKEMWDTLRLTHEGTTDVKRSRINALTHEYELFRMNTNENIQSM 215
Query: 116 FSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLEELISIL 175
RF +V + L K + +D + +++RCL W P VT+I +RD+ NMSL L L
Sbjct: 214 QKRFTHIVNHLAALGKEFQNEDLINKVLRCLSREWQPKVTAISESRDLSNMSLATLFGKL 35
Query: 176 KCHELK 181
+ HE++
Sbjct: 34 QEHEME 17
>TC232995
Length = 1009
Score = 74.7 bits (182), Expect = 3e-13
Identities = 57/137 (41%), Positives = 75/137 (54%)
Frame = +3
Query: 1222 NPQVLKMKRNQTMCSN*RNHSTV*SKLPEHGMRDLAHSFWRMNL*GVK*IQLFFARLIKM 1281
NP VLK NQTM N + V*+K HGM D F + N VK I + R M
Sbjct: 9 NPLVLKFLINQTMFINYKRLFMV*NKPLGHGMND*VIFFLKKNSPEVKWIPHYS*RESIM 188
Query: 1282 IS*LCKFMLMILYLVLLINLYAKNFLR*CRLNLR*V*WEN*STFWEYKLIKHQKEHISIR 1341
I K+MLMI +L L+ A++F C++NL+ *WEN*STFW+YK K K + SI
Sbjct: 189 IFCWFKYMLMI*FLDPLMIHCARSFPLICKVNLKCQ*WEN*STFWDYKSSKLNKVYSSIN 368
Query: 1342 ASTLKNF*RSSICWNLQ 1358
+T +N * + W +Q
Sbjct: 369 PNTARN-*SKDLGWIVQ 416
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 65.1 bits (157), Expect = 2e-10
Identities = 54/143 (37%), Positives = 76/143 (52%)
Frame = -1
Query: 1111 PWKKN*INSPRTMFGA**RSLRVSMLLERNGYSETS*MRKEK*SETRQG*LVKATASRKK 1170
P KKN*IN M G **++L++ + E+NG+ E +*M E R * K +++
Sbjct: 457 PCKKN*INLKEIMCGN**KNLKIILS*EQNGFLEIN*MNMA*LLEIRLD**QKGIIKKRE 278
Query: 1171 *TTLKHLLR*QDWRQLDC*SPSQ*ITI*FYIRWT*RVPS*MVISQRKSMFINPQVLKMKR 1230
*T KH+L+ QD + L+C I I+W +V *MV ++K M NPQ LK +
Sbjct: 277 *TMKKHMLQLQD*KSLECF*HMYP**ILNSIKWMLKVLF*MV*FKKKYMLNNPQALKSRI 98
Query: 1231 NQTMCSN*RNHSTV*SKLPEHGM 1253
NQ M N + V*+K GM
Sbjct: 97 NQLMFINCKRLFMV*NKPLGRGM 29
>AW704309 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (23%)
Length = 423
Score = 60.8 bits (146), Expect = 5e-09
Identities = 35/138 (25%), Positives = 75/138 (53%)
Frame = -1
Query: 50 ARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPN 109
AR+ L + +S + +I + K I+D LK + G+ +++ + L+L +++E M+ +
Sbjct: 423 ARSCLFTGVSQMIFIRIMTLKSPKAIWDCLKEEYAGDDRIRSMQVLNLRREFEL*RMKES 244
Query: 110 ESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIELTRDVENMSLE 169
E+I+E ++ +V I+ L + V + + +PE + + S+E T+D+ ++L
Sbjct: 243 ETIKEYSNKLLGIVNKIKLLGSDFADSRIVEKNLVTVPERYEAFIASLENTKDLSKITLA 64
Query: 170 ELISILKCHELKRSEMQD 187
E++ L+ E +R QD
Sbjct: 63 EVLHALQAQEQRRLMRQD 10
>AI966222
Length = 430
Score = 57.0 bits (136), Expect = 7e-08
Identities = 34/57 (59%), Positives = 41/57 (71%)
Frame = +3
Query: 888 DG*NHAPRNWHG*ALLGRGSKYNMLHSEQNLCETNSE*DSL*IVEEHKTQHFLFSSF 944
DG*NHA + *ALLG ++Y ML SEQNL +T+ E DSL*I+E KTQH +F SF
Sbjct: 3 DG*NHAK**LNP*ALLG*SNEYCMLSSEQNLYKTHLEKDSL*IMEGTKTQHIIFLSF 173
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 53.9 bits (128), Expect = 6e-07
Identities = 34/82 (41%), Positives = 50/82 (60%)
Frame = +1
Query: 1107 IGFWPWKKN*INSPRTMFGA**RSLRVSMLLERNGYSETS*MRKEK*SETRQG*LVKATA 1166
IG KKN* N TM+G **++L++ +LLE+NG+ E +*M E + G* K
Sbjct: 40 IGSLSCKKN*TNLKETMYGN**KNLKIILLLEQNGFLEIN*MNMV*LLEIKPG**RKDII 219
Query: 1167 SRKK*TTLKHLLR*QDWRQLDC 1188
+++*T KH+L QD + L+C
Sbjct: 220 KKRE*TMKKHMLLLQD*KPLEC 285
>BM143109
Length = 415
Score = 52.0 bits (123), Expect = 2e-06
Identities = 26/60 (43%), Positives = 43/60 (71%)
Frame = +2
Query: 1287 KFMLMILYLVLLINLYAKNFLR*CRLNLR*V*WEN*STFWEYKLIKHQKEHISIRASTLK 1346
++MLMIL+LV L+ L+AKNFL+ C++NL+ * +*+ F +YK K + E++S+ + K
Sbjct: 200 RYMLMILFLVQLMILFAKNFLKICKMNLKCQ*CVS*TFFLDYKSSKQRMEYLSVNQNIAK 379
>TC216024 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F23H14.7
{Arabidopsis thaliana;} , partial (14%)
Length = 1433
Score = 51.2 bits (121), Expect = 4e-06
Identities = 46/168 (27%), Positives = 76/168 (44%), Gaps = 3/168 (1%)
Frame = +2
Query: 181 KRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIW 240
K+S + S+ E+ K ++SK L+ S+ + DS DEL SKR
Sbjct: 491 KKSSSETSDYDDFESSSEEERRKKKQSKKLRDRGSRSDSSDSDSIADEL---SKRKRHHK 661
Query: 241 KHRQSKFKGSGRAKGKYESSGQKKS---SIKEVTCFECKESGHYKSDCPKLKKDKKPKKH 297
+ R SKF GS + + +S +K++ K E ES D P+ K +K +KH
Sbjct: 662 RQRPSKFSGSDYSTEEGDSLVRKRNHGKHSKRHRRSESSESDLSSDDAPRKKGHRKHQKH 841
Query: 298 FKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKGAESKEAVDSDSE 345
K+S V S+S+ S G+ ++ ++ ESK ++ S+
Sbjct: 842 H--KRSHNVELRSSDSDYHHSHGQRSRSKSLEENSEDESKRSMHKKSD 979
Score = 43.9 bits (102), Expect = 6e-04
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 4/175 (2%)
Frame = +2
Query: 179 ELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASE-DSD---EDELTLISK 234
E K+ ++ + K+ + + K E A K + L+A + + S+ DSD +DE SK
Sbjct: 224 EEKKKKIMERKEAPLKWEQKLEAAAETKERKLKATKHKKRSGSDSDSDNDSDDESRKTSK 403
Query: 235 RLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKKP 294
R +R KHR+ SG + + E S ++K+ + + E + ++S + ++ KK
Sbjct: 404 RSHR--KHRKHSHYDSGDHEKRKEKSSKRKT---KKSSSETSDYDDFESSSEEERRKKKQ 568
Query: 295 KKHFKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKGAESKEAVDSDSESEGD 349
K + + S S+S D DS + + SK + S EGD
Sbjct: 569 SKKLRDRGS------RSDSSDSDSIADELSKRKRHHKRQRPSKFSGSDYSTEEGD 715
>CF922226
Length = 667
Score = 51.2 bits (121), Expect = 4e-06
Identities = 53/253 (20%), Positives = 97/253 (37%)
Frame = -3
Query: 99 QKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRIIRCLPESWMPLVTSIE 158
Q SF M + S+ E F L+ + ++ + +D + ++ LP+S+ ++
Sbjct: 629 QSLYSFKMHEDRSVGEQLDLFNKLILDLENIDVTIDDEDQALLLLCYLPKSYSHFKETLL 450
Query: 159 LTRDVENMSLEELISILKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESE 218
RD ++SL+E+ + L EL + KK S + + + + K K
Sbjct: 449 FGRD--SVSLDEVQTALNSKELNERKE---KKSSASGEGLTARGKTFK------------ 321
Query: 219 EASEDSDEDELTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKES 278
+DS+ D + K K E+ + +I ++ C+ CK+
Sbjct: 320 ---KDSEFD------------------------KKKQKPENQKNGEGNIFKIRCYHCKKE 222
Query: 279 GHYKSDCPKLKKDKKPKKHFKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKGAESKE 338
GH + CP+ +K+ K D + V DG +V +K E+K
Sbjct: 221 GHTRKVCPERQKNGGSNNRKK---------DSGNAAIVQDDGYESAEALMVSEKNPETKW 69
Query: 339 AVDSDSESEGDPN 351
+DS PN
Sbjct: 68 IMDSGCSWHMTPN 30
>TC216023 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F23H14.7
{Arabidopsis thaliana;} , partial (15%)
Length = 1437
Score = 45.8 bits (107), Expect = 1e-04
Identities = 58/240 (24%), Positives = 96/240 (39%), Gaps = 4/240 (1%)
Frame = +3
Query: 179 ELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEESEEASE-DSD---EDELTLISK 234
E K+ ++ + K+ + + K E A K + L+ + S+ DSD +DE SK
Sbjct: 213 EEKKKKIMERKEAPLKWEQKLEAAAEAKERKLKVAKHTKRSGSDSDSDYDSDDESRKTSK 392
Query: 235 RLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDKKP 294
R +R KHR+ SG + + E S ++K T ES Y SD + +++
Sbjct: 393 RSHR--KHRKHSHYDSGDHEKRKEKSSKRK------TKKWSSESSDYSSDDSESSFEEER 548
Query: 295 KKHFKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKGAESKEAVDSDSESEGDPNSDD 354
++ K K L S+S + DS + + SK + S EGD
Sbjct: 549 RRKKKQSKKLRDRGSRSDSSNYDSTADELSKRKRQHKRQRPSKFSGSDYSTDEGDSLVQK 728
Query: 355 ENEVFASFSTSELKHALSDIMDKYNSLLSTHKKLKKNLSAVSKTPSEHEKIISDLKNENH 414
N S + + + SD+ +S + HKK + K E +SD +H
Sbjct: 729 RNHGMHSKRHRQSESSESDL----SSDDAPHKKGHRKHHKHHKRSHNVELRLSDSDYRSH 896
Score = 45.4 bits (106), Expect = 2e-04
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Frame = +3
Query: 198 KSEKAKVEKSKALQAEEEESEEASEDSDEDELTLISKRLNRIWKHRQSKFKGSGRAKGKY 257
+ + K ++SK L+ S+ ++ DS DEL SKR + + R SKF GS + +
Sbjct: 540 EERRRKKKQSKKLRDRGSRSDSSNYDSTADEL---SKRKRQHKRQRPSKFSGSDYSTDEG 710
Query: 258 ESSGQKKS---SIKEVTCFECKESGHYKSDCPKLKKDKKPKKHFKTKKSLMVTFDESESE 314
+S QK++ K E ES D P K +K KH K ++ + +S
Sbjct: 711 DSLVQKRNHGMHSKRHRQSESSESDLSSDDAPHKKGHRKHHKHHKRSHNVELRLSDS--- 881
Query: 315 DVDSDGEVQGLMAIVKDKGAESKE 338
D S G+ ++ ++ ESK+
Sbjct: 882 DYRSHGQRSRSKSLEENSEDESKK 953
>AI959950
Length = 466
Score = 45.1 bits (105), Expect = 3e-04
Identities = 49/120 (40%), Positives = 63/120 (51%), Gaps = 3/120 (2%)
Frame = -2
Query: 1113 KKN*INSPRTMFGA**RSLRVSMLLERNGYSETS*MRKEK*SETRQG*LVKATASRKK*T 1172
KKN I+ R M + + LE NGY T+* R + +T+Q *L+K T +RK *T
Sbjct: 384 KKNLISFKRIMSRSSLNYQKERR*LE*NGYFVTN*TRMVRL*DTKQD*LLKVTHNRKV*T 205
Query: 1173 TLK--HLLR-*QDWRQLDC*SPSQ*ITI*FYIRWT*RVPS*MVISQRKSMFINPQVLKMK 1229
T K HLL *+ + P I I* I+W *+V *M S+RK M N LKMK
Sbjct: 204 TQKPLHLLHV*K*YASYFHLQP---IVI*SCIKWM*KVHF*MA*SKRKFMLNNRLDLKMK 34
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 43.9 bits (102), Expect = 6e-04
Identities = 55/181 (30%), Positives = 89/181 (48%)
Frame = +1
Query: 1289 MLMILYLVLLINLYAKNFLR*CRLNLR*V*WEN*STFWEYKLIKHQKEHISIRASTLKNF 1348
MLM LV A++FL * R++L+ V* +*S+ ++K + +SI+ +
Sbjct: 505 MLMT*SLVQPQKGCARSFLS**RMDLKRV*KVS*SSS*DFKSFRKFMGFLSIKRNIQSPI 684
Query: 1349 *RSSICWNLQWPRLQCILHAFWRKKIKVVKYVRSSIVE**VHFYT*LHLGQTYYLVFTYV 1408
*+ S + CI+ + KV+ + SIV * + ++ *L + Q L F +V
Sbjct: 685 *KGSEWMKPNLWQPLCIVPQSLTRMRKVIILHKRSIVV*LILYHI*LLVDQILCLSFAFV 864
Query: 1409 LVSNQIQGKPT*LLLRGS*GI*KAPLTLA*CIRKHQSTSFQVIVMLIMLEIEQREKVLLE 1468
+ IQ L L+GS* I L + +RK S F IVM I+L I+ + + L+E
Sbjct: 865 QDFSLIQKFLMLLQLKGS*DILLELLIIVYGLRKGLSLIF*DIVMFILLVIK*KGRALVE 1044
Query: 1469 I 1469
+
Sbjct: 1045 M 1047
>TC206105 weakly similar to UP|Q7RH28 (Q7RH28) Mature-parasite-infected
erythrocyte surface antigen, partial (5%)
Length = 858
Score = 40.8 bits (94), Expect = 0.005
Identities = 45/193 (23%), Positives = 85/193 (43%), Gaps = 7/193 (3%)
Frame = +1
Query: 162 DVENMSLEELISI----LKCHELKRSEMQDLKKKSIALKSKSEKAKVEKSKALQAEEEES 217
+ + +L+EL + L HEL + + KKK A K + + K +A EE++
Sbjct: 283 EAQKKALDELKKLVQEALNNHELTAPKPEPEKKKPAAEKKEEVEVTEGKKEAEVIEEKKE 462
Query: 218 EEASEDSDEDELTLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQKKSSIKEVTCFECKE 277
E +E+ E E+T K I + ++ + K + E + +K KE E K+
Sbjct: 463 VEVTEEKKEIEVTEEKKEAEVIEEKKEVEVT---EEKKEIEVTEEK----KEAEVKEEKK 621
Query: 278 SGHY---KSDCPKLKKDKKPKKHFKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKGA 334
G K + ++ K+ + + KK + VT ++ E E + EV+ + + +
Sbjct: 622 EGEVTEEKKEVEVTEEKKEAEVIVEEKKEVEVTEEKKEVEVTEGKKEVEVIEEKKETEVT 801
Query: 335 ESKEAVDSDSESE 347
E K+ V+ + E
Sbjct: 802 EEKKEVEVEVREE 840
>BI425121
Length = 412
Score = 40.8 bits (94), Expect = 0.005
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +2
Query: 861 WNCT*FLLSQNSSTKWCC*EEEQNSSGDG*NHAPRNWHG*ALLGRGSKYNMLHSEQNLCE 920
W +* +L++N S K *+E+ N + G*+H S +N+L S+QN+ +
Sbjct: 212 WYFS*LVLTENPSRK*GS*KEK*NFARKG*DH--------------SFHNLLCSKQNIDK 349
Query: 921 TNSE*DSL*IVEEHKTQHFL 940
TN + DSL* +E KT +F+
Sbjct: 350 TNDKKDSL*TMERKKTHYFI 409
>CA852083
Length = 829
Score = 39.7 bits (91), Expect = 0.011
Identities = 36/165 (21%), Positives = 66/165 (39%), Gaps = 17/165 (10%)
Frame = +1
Query: 205 EKSKALQAEEEESEEASEDSDEDEL-TLISKRLNRIWKHRQSKFKGSGRAKGKYESSGQK 263
E++K+ + S+E E D + + T + R ++W+ AK K K
Sbjct: 187 ERAKSNKRSNAGSDEEEEARDPNAVPTDFTSREAKVWE-----------AKSKATERNWK 333
Query: 264 KSSIKEVTCFECKESGHYKSDCPK-LKKDKKPKKHFK----TKKSLMVTFDESESEDVDS 318
K +E+ C C ESGH+ CP L ++K + F+ K++ F E ++
Sbjct: 334 KRKEEEMICKLCGESGHFTQGCPSTLGANRKSQDFFERIPARDKNVRALFTEKVLSKIEK 513
Query: 319 DGE-----------VQGLMAIVKDKGAESKEAVDSDSESEGDPNS 352
D V G ++ KG ++ + + + G +S
Sbjct: 514 DVGCKIKMDEKFIIVSGKDRLILAKGVDAGHKIREEGDQRGSSSS 648
>TC217412 similar to UP|Q6L724 (Q6L724) ATP-dependent RNA helicase, partial
(3%)
Length = 868
Score = 38.9 bits (89), Expect = 0.018
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +3
Query: 222 EDSDEDELTLISKRLNRIWKHRQSKFKGSGRAKGK-------YESSGQKKSSIKEVTCFE 274
EDS +D S+R R +K S + +G++ G SS S TCF
Sbjct: 141 EDSGDDFGDQSSRRGGRNFKTGNSWSRAAGKSSGDDWLIGGGRRSSRPSSSDRFGGTCFN 320
Query: 275 CKESGHYKSDCPKL 288
C ESGH SDCP +
Sbjct: 321 CGESGHRASDCPNV 362
>TC218149 similar to UP|Q70I27 (Q70I27) SAR DNA-binding protein-like protein,
partial (57%)
Length = 1030
Score = 38.5 bits (88), Expect = 0.024
Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 24/181 (13%)
Frame = +2
Query: 201 KAKVEKSKALQAEEEESEEASEDSDEDELTL-----ISKRLNRIWKHRQSKFKGSGRAKG 255
K K+ +S A + +A DS ++ + L + RL + +F GS + K
Sbjct: 455 KGKISRSLAAKTALAIRCDALGDSQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKP 634
Query: 256 KYESSGQKK-------------------SSIKEVTCFECKESGHYKSDCPKLKKDKKPKK 296
K E+ + + S I ++ E S K KK+KK KK
Sbjct: 635 KIEAYDKDRKKGAGGLITPAKTYNPSADSVIGQMVDSAIDEDAQEPSVADK-KKEKKDKK 811
Query: 297 HFKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKDKGAESKEAVDSDSESEGDPNSDDEN 356
K KK E V +DGE + + KDK + KE ++ ++ D N+ ++
Sbjct: 812 KKKDKKE--------EDATVQADGEEPEPVVVKKDKKKKRKETESAELQNGNDDNAGEKK 967
Query: 357 E 357
+
Sbjct: 968 K 970
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.355 0.156 0.545
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,749,008
Number of Sequences: 63676
Number of extensions: 960998
Number of successful extensions: 11813
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 6557
Number of HSP's successfully gapped in prelim test: 514
Number of HSP's that attempted gapping in prelim test: 4859
Number of HSP's gapped (non-prelim): 7679
length of query: 1602
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1492
effective length of database: 5,635,272
effective search space: 8407825824
effective search space used: 8407825824
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0369a.2