TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0365.17
         (568 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG789506                                                              109  4e-24
TC217419 weakly similar to UP|YG49_SCHPO (O60184) Protein C23E6....    30  2.9
TC221329                                                               30  3.8
BM108203                                                               29  4.9
TC227783                                                               29  4.9
TC207129 homologue to UP|Q84XV9 (Q84XV9) Phosphoribosylformylgly...    29  6.5
CO981269                                                               28  8.4

>BG789506 
          Length = 387

 Score =  109 bits (272), Expect = 4e-24
 Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 6/125 (4%)
 Frame = +1

Query: 217 SFSRFIKDHY--VENGEVSDAEHVAFLLYWLSAYVFCTKSLRIPAKLLPLANLLHEGRQL 274
           +FS++I +H   VE  EVSD EHVAFL  WLS YVFCTKSL++  + +P+A  +HEG+  
Sbjct: 10  TFSKYIAEHKGSVEE-EVSDEEHVAFLTLWLSHYVFCTKSLQVAKRFIPMALQIHEGQNF 186

Query: 275 AMARLVLGNLYQMLNEAVEDIRNTKT-VSLNAAGPLWLFQLWLNAVFESLLPV---QDNP 330
              RL+L  LY+ L EA +D++ +K   S   +GP+WL QLWLNA FE  + V   QD  
Sbjct: 187 GFGRLLLAVLYESLGEACDDLKKSKDGSSFLVSGPMWLLQLWLNATFEQEMGVIIPQDYA 366

Query: 331 LTVSN 335
             V+N
Sbjct: 367 EEVAN 381


>TC217419 weakly similar to UP|YG49_SCHPO (O60184) Protein C23E6.09 in
           chromosome II, partial (3%)
          Length = 692

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -2

Query: 486 PFTYAPSYYATNAFKAWW--SEYWAQISKPLVDCLQCMTDAFLLQKQDPKKTKGMHLAEI 543
           PFTYAP  Y        W  S YW+  S P   C Q  ++  +    + K    +HL E 
Sbjct: 535 PFTYAPQPYQVPLTLTSWMTSHYWS--SLPFHPCFQKRSNLQITCTTEQKAFVQLHLQEF 362

Query: 544 RSF 546
             +
Sbjct: 361 HQY 353


>TC221329 
          Length = 874

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 12  ATELKLDESKRVPIPEPPNEAEKRAIWKSQVLIPFSVNGTLRAILGPL---KVVKHDMPN 68
           ATE + D S ++ + +PPN  +   +W +++++   +NG  R+ L  L   K+V   +P+
Sbjct: 259 ATEPR-DSSNKLLVGQPPNSLQGNTVWNAKIIL---MNGLSRSALEELSSDKIVDDRIPH 426


>BM108203 
          Length = 448

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 20/67 (29%), Positives = 30/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 64  HDMPNSLPEEHESFHPSVRGKELVLAFQ-PSYSMPFLSDPKRAFRSAPPNPSANDKAYLK 122
           HD+  SLP   +  H S R + L +  Q P    PF+ D     R  P       + +L 
Sbjct: 180 HDITKSLPSSXKPVHESKRRRVLPMMDQFPVEIHPFIEDIIDVEREIPIVVIVLLQLHLV 359

Query: 123 WLDRVEG 129
           W++R+ G
Sbjct: 360 WVERILG 380


>TC227783 
          Length = 1056

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/43 (34%), Positives = 24/43 (54%)
 Frame = +3

Query: 142 DLIQLSRSPISYNPAMLLSALYFWERSTNCLHVPFGMITPTLL 184
           D ++L R P+ Y   ++LSAL FW  S      P G+I+  ++
Sbjct: 468 DPLELLRGPLYYVLILILSALVFWRES------PIGVISLAMM 578


>TC207129 homologue to UP|Q84XV9 (Q84XV9) Phosphoribosylformylglycinamidine
            synthase, complete
          Length = 4134

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 19/56 (33%), Positives = 30/56 (52%)
 Frame = -1

Query: 437  LVSRQFGLSQVLPNTLFDKSLVLYPGTIKRASVFDTTVQFYNKRLLNLSPFTYAPS 492
            +V ++F  +    NTLF +S+   PG I   S+  TT +   K  L +SP T++ S
Sbjct: 2001 VVKKRFEQTDGKLNTLFRESITSIPGAISSGSLS*TT-RLNLKVFLGMSPRTFSSS 1837


>CO981269 
          Length = 791

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (54%)
 Frame = -1

Query: 365 MFLELKHYRSSFSPYSKAIRGPFWLRNSYPNASDSALP 402
           MF +L H +  F+   + +RG  W  ++YP  SD  LP
Sbjct: 614 MFTDLNHLK--FTTALEGLRGLPWAHSTYPGGSD*DLP 507


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,181,260
Number of Sequences: 63676
Number of extensions: 430980
Number of successful extensions: 2215
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2214
length of query: 568
length of database: 12,639,632
effective HSP length: 102
effective length of query: 466
effective length of database: 6,144,680
effective search space: 2863420880
effective search space used: 2863420880
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)