TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0346.9
         (569 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC233924                                                               59  4e-09
TC230710 weakly similar to UP|Q9SD82 (Q9SD82) Replication factor...    37  0.018
TC208172                                                               36  0.041
TC222059 similar to GB|CAD39676.1|21741394|OSJN00121 OSJNBb0051N...    31  1.7
TC233023 similar to UP|O48652 (O48652) 6-4 photolyase, partial (...    31  1.7
BU082379                                                               30  2.9
TC226394                                                               30  3.8
CA938600                                                               29  6.5
TC226934 similar to UP|Q9LNV5 (Q9LNV5) F22G5.30, partial (75%)         28  8.5
TC206433                                                               28  8.5

>TC233924 
          Length = 641

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 32/77 (41%), Positives = 45/77 (57%), Gaps = 6/77 (7%)
 Frame = +3

Query: 11  INPSKETWNIVAKVQRLWL------SPSLYGSKLPFSLDMVLVDSKGDKIHATVRKTLIY 64
           IN  KE+W I+ KV RLW+      +     SK+  S +MVLVDSK  ++H +V+ TLIY
Sbjct: 225 INVEKESWKIMVKVVRLWMIYYVSTNKQTPNSKILLSTEMVLVDSKEGRVHGSVKWTLIY 404

Query: 65  RFQSLLTEGRVYQISFF 81
           +F   L E +V    F+
Sbjct: 405 KFDKTLQEEKVLYSIFW 455


>TC230710 weakly similar to UP|Q9SD82 (Q9SD82) Replication factor A-like
           protein, partial (30%)
          Length = 861

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 30/132 (22%), Positives = 61/132 (45%), Gaps = 2/132 (1%)
 Frame = +1

Query: 206 SQLQDSGMIYVEEDLLRQTDGKTIEQIKDLTEKSYCVVLGTMKYIPDGMDWYYPACK-CS 264
           S + ++G+  V  D +  +D  +   + D  + ++  + G + +I      +Y ACK C+
Sbjct: 58  SPISNNGIRSVYTDRIHLSDIISNPSLGD-GKPAFFSLRGHITFIKPDQAMWYRACKTCN 234

Query: 265 KKVYPADGM-YFCEACNRHVASPLYKFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAIL 323
           KKV  + G  Y+C+ C +       ++ +  +V +        +F+QEA  +V      L
Sbjct: 235 KKVTESFGSGYWCDGCQKSDEQCSLRYIMVAKVSDGSAETFISVFNQEAEKIVGCSADDL 414

Query: 324 VDASNKAGPDSP 335
            +   + G D+P
Sbjct: 415 DNLKLQEGEDNP 450


>TC208172 
          Length = 1148

 Score = 36.2 bits (82), Expect = 0.041
 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
 Frame = +1

Query: 289 KFRIQLRVMNSKNTATFVLFDQEANSVVKKPCAILVDASNKAGPDSPNVPSDILDLIDRT 348
           ++ I+++V +    A F L  ++   ++K  C  +V   +  GP +  +P+ + DL    
Sbjct: 514 EYNIRVQVYDGTGNACFKLPYKDVKILLKISCKDIV--LHIEGPYAQELPALLYDLNGLD 687

Query: 349 FLFKIEV------SNSSNSIYEPSYRVKKFCYDPEIINQFISNSPHLMYDE 393
            LF ++       ++SSN      Y V + C++ EI+        +  +DE
Sbjct: 688 LLFLVDTRIEGSATSSSNVSDHDGYSVSEICHEKEILRMLQRGEHYFQFDE 840


>TC222059 similar to GB|CAD39676.1|21741394|OSJN00121 OSJNBb0051N19.7 {Oryza
           sativa (japonica cultivar-group);} , partial (30%)
          Length = 510

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 33/112 (29%), Positives = 45/112 (39%), Gaps = 5/112 (4%)
 Frame = +2

Query: 341 ILDLIDRTFLFKIEVSNSSNSIYEPSYRVKKFCYDPEIINQFISNSPHLMYDESNPFYFL 400
           IL+++ R    K EV N S+ IY P +   +   + E+  Q I N      D+      +
Sbjct: 158 ILEMVGRRKNIKTEV-NCSSEIYFPDWIYNRLESNEELGLQNIRNESD---DKLVRKMTI 325

Query: 401 ATPTSVLKQESINPEISKDLN-----VEFAVAGELPNTDSPPASAVDLGCDT 447
                +    S  P ISK L      VE       P   SPP S V L C+T
Sbjct: 326 VGLWCIQTHPSTRPAISKVLEMLGSKVELLQIPPKPFLSSPPTSPVHLSCET 481


>TC233023 similar to UP|O48652 (O48652) 6-4 photolyase, partial (39%)
          Length = 678

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = +1

Query: 400 LATPTSVLKQESINPEISKDLNVEFAVAGELPNTDSPPASAVDLGCDTQNLSFDGGSSDM 459
           L  PT ++++    P +S    V+  +AGE P++ S   S++       NL    GS D+
Sbjct: 322 LFNPTDIIEKNGGKPPLSYQSFVK--LAGEPPSSLSTVYSSLP---PVGNL----GSCDI 474

Query: 460 SGIKLIAI--YGDSVGSDTSPPKGGSVESPNAGKNKLKEKMDCLK 502
           S +  I    YGD+   + SP KGG  E+       LK   +C+K
Sbjct: 475 SEVPTIRDLGYGDAEQDEFSPFKGGESEA-------LKRLDECMK 588


>BU082379 
          Length = 421

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 243 VLGTMKYIPDGMDWYYPACKCSKKVYPADGMYFCEACNRH 282
           VL   ++IP      Y  CKC  +    +  YFC  CN H
Sbjct: 127 VLVIFRFIPYSHLQLYAKCKCPFEHVEYENDYFCSCCN*H 246


>TC226394 
          Length = 1021

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = -1

Query: 90  FRTTGHAFKINFQIHTFVCVVTNTPIN----HSPYSFMAISEIMFND--PDASFLIDV 141
           F    + F  +   H  +C+      N    +SP+S M I  I F+D  P+ASF +D+
Sbjct: 610 FHRKSNQFPCSIP*HFAICIFHTFGDNMISVYSPFSLMFIESITFSDFMPEASFELDI 437


>CA938600 
          Length = 280

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 95  HAFKINFQIHTFVCVVTNTPINHSPYS 121
           ++F INF++H F        I+HSPYS
Sbjct: 170 NSFLINFKLHAFHFPFQTRTISHSPYS 90


>TC226934 similar to UP|Q9LNV5 (Q9LNV5) F22G5.30, partial (75%)
          Length = 1613

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 497 KMDCLKTARDEKLKTLHAEIIEAVVAPNDSDDNASAGGEV 536
           +M+ L+   DE +KTL+   ++A V   D  D+  A GE+
Sbjct: 806 EMNTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEI 925


>TC206433 
          Length = 1287

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 17/58 (29%), Positives = 29/58 (49%)
 Frame = -1

Query: 91   RTTGHAFKINFQIHTFVCVVTNTPINHSPYSFMAISEIMFNDPDASFLIDVIGILTGA 148
            + T H  KI   + TF  + T+TP+ H  +S   +  +  +    S L+ V G+L G+
Sbjct: 1179 KQTPHHHKI---MTTFSWIQTSTPMKHQIFSCSKLCTVSGSGGMFSVLVSVSGVLVGS 1015


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.315    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,890,095
Number of Sequences: 63676
Number of extensions: 300006
Number of successful extensions: 1491
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of query: 569
length of database: 12,639,632
effective HSP length: 102
effective length of query: 467
effective length of database: 6,144,680
effective search space: 2869565560
effective search space used: 2869565560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)