BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.12
(1332 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 733 0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 720 0.0
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 209 8e-54
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 160 5e-39
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 157 4e-38
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 130 8e-37
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 143 6e-34
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 142 1e-33
TC232995 140 4e-33
BI321712 139 8e-33
BG508993 138 1e-32
BU549979 133 6e-31
CO981347 106 8e-30
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 127 2e-29
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 127 3e-29
CO982036 125 2e-28
CO983516 125 2e-28
AI959950 124 2e-28
AW185460 122 1e-27
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 122 1e-27
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 733 bits (1893), Expect = 0.0
Identities = 409/1084 (37%), Positives = 625/1084 (56%), Gaps = 7/1084 (0%)
Frame = +1
Query: 250 CYKCHRLGHFQYECPDWEKKVNYAELEEEEELLLMAYVEPHQTKKQEVWYLDSGCSNHMK 309
CY H H + + KK+ + + L++ + + +E WYLDSGCS HM
Sbjct: 1549 CYHLHGHPHHGTQSSNSRKKMMWVPKHKAVSLVVHTSL---RASAKEDWYLDSGCSRHMT 1719
Query: 310 GNKEWFLDLEEDFSRTVKLGNDTRMAVVAKGSIRMQLNGITQVISDVYYIPELKNNLLSI 369
G KE+ L++E + V G+ ++ ++ G ++ +G+ ++ V + L NL+SI
Sbjct: 1720 GVKEFLLNIEPCSTSYVTFGDGSKGKIIGMG--KLVHDGLPS-LNKVLLVKGLTANLISI 1890
Query: 370 GQLQEKGLAILIQDGTCKVFHPMRGVIMQTNMSGNIMFFLLASMAPKRSVCLQAEAVSQK 429
QL ++G + C V + V+M+ + S + + S CL ++ +
Sbjct: 1891 SQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSK---ED 2061
Query: 430 EAHM*HCRFGHLNHKGLRTLSHKKMVVGLPSLESPE-KICTTCLTGKQHREPVPKRSLWR 488
E + H RFGHL+ +G++ + K V G+P+L+ E +IC C GKQ + K
Sbjct: 2062 EVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQT 2241
Query: 489 ASKQLQLVHSDICGPIKPSWNSDKRYILSFIDDHTRKTWVYFLHEKSEAFVKFKEYKAGV 548
S+ L+L+H D+ GP++ KRY +DD +R TWV F+ EKSE F FKE +
Sbjct: 2242 TSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRL 2421
Query: 549 EKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGINRQLTTTYTP*QNGVAERKNRTIMNVV 608
++E I +R+D EF ++ F EFC S+GI + + TP QNG+ ERKNRT+
Sbjct: 2422 QREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAA 2601
Query: 609 RSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAVENKTPEEAWSGEKPVVHYFRIFECVAH 668
R ML+ K++P W+EA+ +I NR + T E W G KP V +F IF +
Sbjct: 2602 RVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCY 2781
Query: 669 VHVPDQRRSKLDDKSKKCVFLGVSDESKAWRLYVPVSKKIIVSKDVVFEEEESWDWGRIE 728
+ ++R K+D KS +FLG S S+A+R++ ++ ++ S +VV ++ +E
Sbjct: 2782 ILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVE 2961
Query: 729 EEIKL------DILECGEEDQNEEENGRTDLNNLSSNSSSSSNSLPESLPNEPISNTPEE 782
E+++ D + GE +N + TD +N++ SS + + P E I P
Sbjct: 2962 EDVRTSGDNVADAAKSGENAENSDS--ATDESNINQPDKRSSTRIQKMHPKELIIGDPNR 3135
Query: 783 LVEGRVVRERRVPSWFADYETREGLEENLNAMMMVTENDPVSFGEAVKNKKWRDAMSAEI 842
G R R V E ++ V++ +P + EA+ ++ W +AM E+
Sbjct: 3136 ---GVTTRSREV--------------EIVSNSCFVSKIEPKNVKEALTDEFWINAMQEEL 3264
Query: 843 ESIERNQSWELTVLPKGVKPIGVKWVFKTKLNEDGDVEKFKARLVAKGYAQRHEVDYTEV 902
E +RN+ WEL P+G IG KW+FK K NE+G + + KARLVA+GY Q VD+ E
Sbjct: 3265 EQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDET 3444
Query: 903 FAPVARLDTIRVILEVAAQFSWEVFQLDVKSAFLHGELKEEVFVQQPKGFIRKGEEDKVY 962
FAPVARL++IR++L VA ++++Q+DVKSAFL+G L EEV+V+QPKGF D VY
Sbjct: 3445 FAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVY 3624
Query: 963 RLKKALYGLKQALRAWYSRIEAYFVREDFERCPSEHILFTKSKGGRILIVSLYVDDLIFT 1022
RLKKALYGLKQA RAWY R+ + ++ + + + LF K ++I +YVDD++F
Sbjct: 3625 RLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 3804
Query: 1023 GNDRVMCDEFKSSMMLEFDMSDLGKMKYFLGVEVKQC*DGIFIC*RRYARDVLARFDMRD 1082
G M F M EF+MS +G++ YFLG++VKQ D IF+ RYA++++ +F M +
Sbjct: 3805 GMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMEN 3984
Query: 1083 SNAVKNPTVPGTKLSKDEGGVRVDETLFKQVVGSLMYLTVTRPDLMYGVSLISRFMSSPT 1142
++ + P KLSKDE G VD++L++ ++GSL+YLT +RPD+ Y V + +R+ ++P
Sbjct: 3985 ASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPK 4164
Query: 1143 MSHWLAAKRILRYLKGTTDLGIFYKKGGSNMKLMAFPDSDYAGDLDDRRSTSRFVFMLGS 1202
+SH KRIL+Y+ GT+D GI Y SN L+ + D+D+AG DDR+STS F LG+
Sbjct: 4165 ISHLTQVKRILKYVNGTSDYGIMYCH-CSNPMLVGYCDADWAGSADDRKSTSGGCFYLGN 4341
Query: 1203 GVVSWSSKKQYVVALSTTEAEYIAAALCACQCVWLIRVLEKIGVEEKTSTEIMCDNSFTI 1262
++SW SKKQ V+LST EAEYIAA Q VW+ ++L++ VE+ T + CDN I
Sbjct: 4342 NLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMT-LYCDNMSAI 4518
Query: 1263 QLSKNPVFHGKSKHIDVRFHFLRDLVNDGVIKLSYCNSQDQIADIMTKPIKLEQFEKLRG 1322
+SKNPV H ++KHID+R H++RDLV+D VI L + ++++QIADI TK + QFEKLRG
Sbjct: 4519 NISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRG 4698
Query: 1323 MLGV 1326
LG+
Sbjct: 4699 KLGI 4710
Score = 100 bits (250), Expect = 3e-21
Identities = 68/209 (32%), Positives = 105/209 (49%), Gaps = 11/209 (5%)
Frame = +1
Query: 13 PKFDG-HYDYWSMTMENFLRSKEM--WSLVDEGIP---VLETGTTPASE-----EQMKAV 61
P DG +Y+YW M FL+S + W V +G +L+T P E + K
Sbjct: 40 PILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEE 219
Query: 62 EEAKLKDLKVKNYLFQAIGREILETILDKETSKEIWNSMKQKYHGSSKVKREQLQVMRRE 121
+E L + K N LF + + I I +K+ W +K + G+SKVK +LQ++ +
Sbjct: 220 DELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATK 399
Query: 122 FDLLAMKEGEKVDSFLGRTLIVVNKMKSNGETMEHSTVVSKILRSLTSKFNYVVCSIEES 181
F+ L MKE E + F L + N + GE + +V KILRSL +F+ V +IEE+
Sbjct: 400 FENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEA 579
Query: 182 NDLSILSIDELHGSLLVHEQRMQGHQEEE 210
D+ + +DEL GSL E + E++
Sbjct: 580 QDICNMRVDELIGSLQTFELGLSDRAEKK 666
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 720 bits (1858), Expect = 0.0
Identities = 403/1109 (36%), Positives = 630/1109 (56%), Gaps = 16/1109 (1%)
Frame = +1
Query: 234 RGRGRGRQSLNKEVIECYKCHRLGHFQYECPDWEKKVNYAELEEEEELLLMAYVEPHQ-- 291
R G ++ ++ C+ C + GH + C ++ +M +V H+
Sbjct: 1465 RHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMM-WVPKHKIV 1641
Query: 292 ---------TKKQEVWYLDSGCSNHMKGNKEWFLDLEEDFSRTVKLGNDTRMAVVAKGSI 342
+E WYLDSGCS HM G KE+ +++E + V G+ ++ + G
Sbjct: 1642 SLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMG-- 1815
Query: 343 RMQLNGITQVISDVYYIPELKNNLLSIGQLQEKGLAILIQDGTCKVFHPMRGVIMQTNMS 402
++ +G+ ++ V + L NL+SI QL ++G + C V + V+M+ + S
Sbjct: 1816 KLVHDGLPS-LNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRS 1992
Query: 403 GNIMFFLLASMAPKRSVCLQAEAVSQKEAHM*HCRFGHLNHKGLRTLSHKKMVVGLPSLE 462
+ + S CL ++ + E + H RFGHL+ +G++ + K V G+P+L+
Sbjct: 1993 KDNCYLWTPQETSYSSTCLFSK---EDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLK 2163
Query: 463 SPE-KICTTCLTGKQHREPVPKRSLWRASKQLQLVHSDICGPIKPSWNSDKRYILSFIDD 521
E +IC C GKQ + K S+ L+L+H D+ GP++ KRY +DD
Sbjct: 2164 IEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDD 2343
Query: 522 HTRKTWVYFLHEKSEAFVKFKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGI 581
+R TWV F+ EKS+ F FKE +++E I +R+D EF +++F EFC S+GI
Sbjct: 2344 FSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGI 2523
Query: 582 NRQLTTTYTP*QNGVAERKNRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAV 641
+ + TP QNG+ ERKNRT+ R ML+ K++P W+EA+ +I NR +
Sbjct: 2524 THEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRG 2703
Query: 642 ENKTPEEAWSGEKPVVHYFRIFECVAHVHVPDQRRSKLDDKSKKCVFLGVSDESKAWRLY 701
T E W G KP V +F IF ++ ++R K+D KS +FLG S S+A+R++
Sbjct: 2704 TPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVF 2883
Query: 702 VPVSKKIIVSKDVVFEEEESWDWGRIEEEIKL---DILECGEEDQN-EEENGRTDLNNLS 757
++ ++ S +VV ++ +EE+++ ++ + + +N E + TD N++
Sbjct: 2884 NSRTRTVMESINVVVDDLTPARKKDVEEDVRTSGDNVADTAKSAENAENSDSATDEPNIN 3063
Query: 758 SNSSSSSNSLPESLPNEPISNTPEELVEGRVVRERRVPSWFADYETREGLEENLNAMMMV 817
S + + P E I P G R R + E ++ V
Sbjct: 3064 QPDKRPSIRIQKMHPKELIIGDPNR---GVTTRSREI--------------EIVSNSCFV 3192
Query: 818 TENDPVSFGEAVKNKKWRDAMSAEIESIERNQSWELTVLPKGVKPIGVKWVFKTKLNEDG 877
++ +P + EA+ ++ W +AM E+E +RN+ WEL P+G IG KW+FK K NE+G
Sbjct: 3193 SKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEG 3372
Query: 878 DVEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDVKSAFLH 937
+ + KARLVA+GY Q VD+ E FAPVARL++IR++L VA ++++Q+DVKSAFL+
Sbjct: 3373 VITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLN 3552
Query: 938 GELKEEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQALRAWYSRIEAYFVREDFERCPSE 997
G L EE +V+QPKGF+ D VYRLKKALYGLKQA RAWY R+ + ++ + + +
Sbjct: 3553 GYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGID 3732
Query: 998 HILFTKSKGGRILIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFDMSDLGKMKYFLGVEVK 1057
LF K ++I +YVDD++F G M F M EF+MS +G++ YFLG++VK
Sbjct: 3733 KTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVK 3912
Query: 1058 QC*DGIFIC*RRYARDVLARFDMRDSNAVKNPTVPGTKLSKDEGGVRVDETLFKQVVGSL 1117
Q D IF+ +YA++++ +F M +++ + P KLSKDE G VD++L++ ++GSL
Sbjct: 3913 QMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSL 4092
Query: 1118 MYLTVTRPDLMYGVSLISRFMSSPTMSHWLAAKRILRYLKGTTDLGIFYKKGGSNMKLMA 1177
+YLT +RPD+ Y V + +R+ ++P +SH KRIL+Y+ GT+D GI Y +M L+
Sbjct: 4093 LYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSM-LVG 4269
Query: 1178 FPDSDYAGDLDDRRSTSRFVFMLGSGVVSWSSKKQYVVALSTTEAEYIAAALCACQCVWL 1237
+ D+D+AG DDR+STS F LG+ ++SW SKKQ V+LST EAEYIAA Q VW+
Sbjct: 4270 YCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWM 4449
Query: 1238 IRVLEKIGVEEKTSTEIMCDNSFTIQLSKNPVFHGKSKHIDVRFHFLRDLVNDGVIKLSY 1297
++L++ VE+ T + CDN I +SKNPV H ++KHID+R H++RDLV+D VI L +
Sbjct: 4450 KQMLKEYNVEQDVMT-LYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEH 4626
Query: 1298 CNSQDQIADIMTKPIKLEQFEKLRGMLGV 1326
++++QIADI TK + QFEKLRG LG+
Sbjct: 4627 VDTEEQIADIFTKALDANQFEKLRGKLGI 4713
Score = 105 bits (262), Expect = 1e-22
Identities = 89/309 (28%), Positives = 135/309 (42%), Gaps = 52/309 (16%)
Frame = +1
Query: 13 PKFDG-HYDYWSMTMENFLRSKEM--WSLVDEGIP---VLETGTTPASE-----EQMKAV 61
P DG +Y+YW M FL+S + W V +G +L+T P +E + K
Sbjct: 40 PILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEE 219
Query: 62 EEAKLKDLKVKNYLFQAIGREILETILDKETSKEIWNSMKQKYHGSSKVKREQLQVMRRE 121
+E L + K N LF + + I I +K+ W +K + G+SKVK +LQ++ +
Sbjct: 220 DELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATK 399
Query: 122 FDLLAMKEGEKVDSFLGRTLIVVNKMKSNGETMEHSTVVSKILRSLTSKFNYVVCSIEES 181
F+ L MKE E + F L + N + GE M +V KILRSL +F+ V +IEE+
Sbjct: 400 FENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEA 579
Query: 182 NDLSILSIDELHGSLLVHEQRMQGH----------------QEEEHVLK----------- 214
D+ + +DEL GSL E + +E+E+ L
Sbjct: 580 QDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVL 759
Query: 215 --------VAQEDRSSRGRGRGAPRGGRGRGRGRQSLNKEV------IECYKCHRLGHFQ 260
+ + DR + R P R +G Q + E I+C+ C GH +
Sbjct: 760 LGKQFNKVLNRMDRRQKPHVRNIPFDIR-KGSEYQKKSDEKPSHSKGIQCHGCEGYGHIK 936
Query: 261 YECPDWEKK 269
ECP KK
Sbjct: 937 AECPTHLKK 963
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 209 bits (531), Expect = 8e-54
Identities = 98/218 (44%), Positives = 152/218 (68%), Gaps = 2/218 (0%)
Frame = +1
Query: 1105 VDETLFKQVVGSLMYLTVTRPDLMYGVSLISRFMSSPTMSHWLAAKRILRYLKGTTDLGI 1164
VD T F++++GSL YL +RP++ + VSLISRFM P +SH AAKR+LR +KGT G+
Sbjct: 7 VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186
Query: 1165 FY--KKGGSNMKLMAFPDSDYAGDLDDRRSTSRFVFMLGSGVVSWSSKKQYVVALSTTEA 1222
+ K L+ + DSD+ D + +ST ++FM V+ SSKKQ V+ALST EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 1223 EYIAAALCACQCVWLIRVLEKIGVEEKTSTEIMCDNSFTIQLSKNPVFHGKSKHIDVRFH 1282
EY+AA+L ACQ VW++ +LE++ + E+ ++ DN I L+K+P HG+SKHI++RFH
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 1283 FLRDLVNDGVIKLSYCNSQDQIADIMTKPIKLEQFEKL 1320
++RD V+ G + + YC +++Q+AD+MTKPI++ +F+++
Sbjct: 547 YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQI 660
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 160 bits (404), Expect = 5e-39
Identities = 75/140 (53%), Positives = 97/140 (68%)
Frame = +3
Query: 1188 DDRRSTSRFVFMLGSGVVSWSSKKQYVVALSTTEAEYIAAALCACQCVWLIRVLEKIGVE 1247
DDR+ST+ FVF +G +W SKKQ +V LST EAEY+AA C C +WL +L+++ +
Sbjct: 9 DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188
Query: 1248 EKTSTEIMCDNSFTIQLSKNPVFHGKSKHIDVRFHFLRDLVNDGVIKLSYCNSQDQIADI 1307
++ EI DN + L+KNPVFH KSKHID R+HF+R+ + +KL Y SQDQ ADI
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADI 368
Query: 1308 MTKPIKLEQFEKLRGMLGVT 1327
TKP+KLE F KLR MLGVT
Sbjct: 369 FTKPLKLETFVKLRSMLGVT 428
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 157 bits (396), Expect = 4e-38
Identities = 76/151 (50%), Positives = 105/151 (69%)
Frame = -3
Query: 837 AMSAEIESIERNQSWELTVLPKGVKPIGVKWVFKTKLNEDGDVEKFKARLVAKGYAQRHE 896
AM E+ ERN W+L P+ IG KWVF+ KL+E G + + KARLVAKGY Q
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 897 VDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDVKSAFLHGELKEEVFVQQPKGFIRKG 956
+DY E +APVARL+ IR++L + +++++Q+DVKSAFL+G ++EEV+V+QP GF
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 957 EEDKVYRLKKALYGLKQALRAWYSRIEAYFV 987
+ VY+L+KALYGLKQA RAWY RI + +
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNFLL 6
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 130 bits (326), Expect(2) = 8e-37
Identities = 75/186 (40%), Positives = 110/186 (58%)
Frame = +3
Query: 1010 LIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFDMSDLGKMKYFLGVEVKQC*DGIFIC*RR 1069
LI+ +YVDD+IF + MC EF M F+ S G++K+ LG+++ Q GIFI +
Sbjct: 489 LIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEK 668
Query: 1070 YARDVLARFDMRDSNAVKNPTVPGTKLSKDEGGVRVDETLFKQVVGSLMYLTVTRPDLMY 1129
Y + L RF M ++ + P T + KDE G + ++ SL YLT +RPD+++
Sbjct: 669 YTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVF 848
Query: 1130 GVSLISRFMSSPTMSHWLAAKRILRYLKGTTDLGIFYKKGGSNMKLMAFPDSDYAGDLDD 1189
V L +RF S P +SH A KRILRYL GTT+ +++KK S L+ + D +AGD +
Sbjct: 849 VVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKK-RSEFDLLGYCDVYFAGDKVE 1025
Query: 1190 RRSTSR 1195
R+STSR
Sbjct: 1026 RKSTSR 1043
Score = 43.9 bits (102), Expect(2) = 8e-37
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +2
Query: 968 LYGLKQALRAWYSRIEAYFVREDFERCPSEHILFTKSKGGRI 1009
+YGLKQALRAWY R+ ++ V F R ++ LF K++ G +
Sbjct: 362 VYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNL 487
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 143 bits (360), Expect = 6e-34
Identities = 77/169 (45%), Positives = 102/169 (59%)
Frame = +1
Query: 452 KKMVVGLPSLESPEKICTTCLTGKQHREPVPKRSLWRASKQLQLVHSDICGPIKPSWNSD 511
+K+V LP + + +C TC GK+HRE P WR K L++VH D+C P+ + D
Sbjct: 283 EKIVYDLPIMNILDGVCDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLCTVEIPT-HGD 459
Query: 512 KRYILSFIDDHTRKTWVYFLHEKSEAFVKFKEYKAGVEKEIGAHITCLRTDRVCEFTSNE 571
Y ++FIDD ++K WVYFL +KSEA FK +KA EK+ G + L D+ E+ S
Sbjct: 460 NNYFITFIDDFSKKMWVYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEYLS-- 633
Query: 572 FDEFCRSQGINRQLTTTYTP*QNGVAERKNRTIMNVVRSMLNEKQVPKV 620
+ F GI QLTT YTP NGV ERKN+TIM++VR ML KQ KV
Sbjct: 634 YTIFFEKHGIQHQLTTKYTPQHNGVTERKNKTIMDMVRCMLKAKQSVKV 780
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 142 bits (358), Expect = 1e-33
Identities = 61/126 (48%), Positives = 94/126 (74%)
Frame = -2
Query: 856 LPKGVKPIGVKWVFKTKLNEDGDVEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVI 915
LP G P+G +WV+ K+ G+V++ KARLVAKGY Q + +DY + F+PVA+L T+R+
Sbjct: 400 LPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVRLF 221
Query: 916 LEVAAQFSWEVFQLDVKSAFLHGELKEEVFVQQPKGFIRKGEEDKVYRLKKALYGLKQAL 975
L +AA W + QLD+K+AFLHG+L+E+++++QP GF+ +GE V +L ++LYGLKQ+
Sbjct: 220 LAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQSP 41
Query: 976 RAWYSR 981
RAW+ +
Sbjct: 40 RAWFGK 23
>TC232995
Length = 1009
Score = 140 bits (353), Expect = 4e-33
Identities = 69/173 (39%), Positives = 105/173 (59%)
Frame = +2
Query: 946 VQQPKGFIRKGEEDKVYRLKKALYGLKQALRAWYSRIEAYFVREDFERCPSEHILFTKSK 1005
V+QP GF + + VY+L+KALYGLKQA RAWY R+ + + ++F R + LF K K
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 1006 GGRILIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFDMSDLGKMKYFLGVEVKQC*DGIFI 1065
IL+V +YVDD+IF + +C EF M EF+MS +G++KYFLG+++KQ GIFI
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 1066 C*RRYARDVLARFDMRDSNAVKNPTVPGTKLSKDEGGVRVDETLFKQVVGSLM 1118
+Y ++++ RF M + + P L KDE G +D ++ +G ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>BI321712
Length = 399
Score = 139 bits (350), Expect = 8e-33
Identities = 70/125 (56%), Positives = 90/125 (72%)
Frame = -3
Query: 1014 LYVDDLIFTGNDRVMCDEFKSSMMLEFDMSDLGKMKYFLGVEVKQC*DGIFIC*RRYARD 1073
LYVDDLIFTGN+ M +EFK M EF+M+D+G M Y+LG+EVKQ GIFI YA++
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 1074 VLARFDMRDSNAVKNPTVPGTKLSKDEGGVRVDETLFKQVVGSLMYLTVTRPDLMYGVSL 1133
VL +F M D+N V P G+KLSK E G VD TL+K ++GSL YLT TRPD++Y V +
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 1134 ISRFM 1138
+SR+M
Sbjct: 19 VSRYM 5
>BG508993
Length = 374
Score = 138 bits (348), Expect = 1e-32
Identities = 67/124 (54%), Positives = 88/124 (70%)
Frame = +1
Query: 1157 KGTTDLGIFYKKGGSNMKLMAFPDSDYAGDLDDRRSTSRFVFMLGSGVVSWSSKKQYVVA 1216
KGT D G+FY +N KL+ F DSD+AGD+DDR+ST+ FVF +G V +WSSKKQ +V
Sbjct: 4 KGTIDFGLFYSPS-NNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVT 180
Query: 1217 LSTTEAEYIAAALCACQCVWLIRVLEKIGVEEKTSTEIMCDNSFTIQLSKNPVFHGKSKH 1276
L T EAEY+AA C C +WL R+LE++ + +K ST+I DN +L+KN VFH +SKH
Sbjct: 181 LFTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKH 360
Query: 1277 IDVR 1280
ID R
Sbjct: 361 IDTR 372
>BU549979
Length = 615
Score = 133 bits (334), Expect = 6e-31
Identities = 65/188 (34%), Positives = 113/188 (59%), Gaps = 2/188 (1%)
Frame = -1
Query: 1133 LISRFMSSPTMSHWLAAKRILRYLKGTTDLGIFYKKGGSNMKLMAFPDSDYAGDLDDRRS 1192
++ R+ S+P + HW AK+++RYL+GT D + YK+ ++++ + DSD+AG +D RRS
Sbjct: 615 VLGRYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNC-LEVIGYSDSDFAGCVDSRRS 439
Query: 1193 TSRFVFMLGSGVVSWSSKKQYVVALSTTEAEYIAAALCACQCVWLIRVLEKIGVEEKTS- 1251
TS ++FML GVVSW S KQ ++A ST E E++ VWL + + V + S
Sbjct: 438 TSGYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISR 259
Query: 1252 -TEIMCDNSFTIQLSKNPVFHGKSKHIDVRFHFLRDLVNDGVIKLSYCNSQDQIADIMTK 1310
++ CDN + ++KN +SKHID+++ +R+ V + + + + N++ I D +TK
Sbjct: 258 PLKLYCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTK 79
Query: 1311 PIKLEQFE 1318
+ + F+
Sbjct: 78 GMTPKNFK 55
>CO981347
Length = 624
Score = 106 bits (265), Expect(3) = 8e-30
Identities = 54/116 (46%), Positives = 69/116 (58%)
Frame = +2
Query: 538 FVKFKEYKAGVEKEIGAHITCLRTDRVCEFTSNEFDEFCRSQGINRQLTTTYTP*QNGVA 597
F KF+E + ++G + LRTD EF +F+EFCR GI R +TP*QNG+A
Sbjct: 107 F*KFRE*HTLIGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNGLA 286
Query: 598 ERKNRTIMNVVRSMLNEKQVPKVFWSEAVRWCVHIQNRCPIVAVENKTPEEAWSGE 653
ER N TI+ VR ML ++PK FW EA ++ NRCP + KTP EAWSGE
Sbjct: 287 ERMNMTILERVRCMLLSARLPKTFWGEAANTTSYLINRCPSSTLGFKTPMEAWSGE 454
Score = 35.0 bits (79), Expect(3) = 8e-30
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +3
Query: 503 PIKPSWNSDKRYILSFIDDHTRKTWVYFLHEKSEAF 538
P + + Y L+ IDD +R+ W+Y L KSE+F
Sbjct: 3 PSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSESF 110
Score = 28.9 bits (63), Expect(3) = 8e-30
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 661 RIFECVAHVHVPDQRRSKLDDKSKKCVFLGVSDESKAWRLY 701
++F +A HV ++ KLD ++ KCVF+G K ++L+
Sbjct: 477 KVFGSLAFDHV---KQGKLDARAVKCVFIGYPKGVKRYKLW 590
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 127 bits (320), Expect = 2e-29
Identities = 56/128 (43%), Positives = 89/128 (68%)
Frame = +3
Query: 822 PVSFGEAVKNKKWRDAMSAEIESIERNQSWELTVLPKGVKPIGVKWVFKTKLNEDGDVEK 881
P + EA+ + WR AM E++++E N +WEL LP G +G +WV+ K+ +G V++
Sbjct: 21 PSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDR 200
Query: 882 FKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDVKSAFLHGELK 941
KARLVAKGY Q + ++Y + F+PV L T+R+ L +AA W + QLD+K+AFLHG+L+
Sbjct: 201 LKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLE 380
Query: 942 EEVFVQQP 949
E+++++QP
Sbjct: 381 EDIYMEQP 404
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 127 bits (319), Expect = 3e-29
Identities = 70/182 (38%), Positives = 111/182 (60%), Gaps = 4/182 (2%)
Frame = +1
Query: 877 GDVEKFKARLVAKGYAQRHEVDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDVKSAFL 936
G +++FKARLVAK Y Q + DYT F+PVA++ + ++ +A W +F LD K+AFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 937 HGELKEEVFVQQPKGFIRKGE-EDKVYRLKKALYGLKQALRAW---YSRIEAYFVREDFE 992
HG L+EEV+++QP GF+ +GE + V +L ++ YGLKQ+ RAW Y ++ + +
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCGAAIWYDSHEAD 387
Query: 993 RCPSEHILFTKSKGGRILIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFDMSDLGKMKYFL 1052
+ + S G I ++ +YVDD+ TG+D+ K + +F DLGK++YFL
Sbjct: 388 ----HSVFYCHSPQGCIYLI-VYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFL 552
Query: 1053 GV 1054
G+
Sbjct: 553 GI 558
>CO982036
Length = 674
Score = 125 bits (313), Expect = 2e-28
Identities = 75/209 (35%), Positives = 112/209 (52%), Gaps = 3/209 (1%)
Frame = -2
Query: 1009 ILIVSLYVD-DLIFTGNDRVMCDEFKSSMMLEFDMSDLGKMKYFLGVEVKQC*DGIFIC* 1067
IL V L V D+I TG+ + S + F + LGK+ YF+ +EVK D +F
Sbjct: 661 ILTVYLLVYVDIIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSL- 485
Query: 1068 RRYARDVLARFDMRDSNAVKNPTVPGTKLSKDEGGVRVDETLFKQVVGSLMYLTVTRPDL 1127
R ++ R + + +P KLSK + + T ++ VVG+L Y TV RP++
Sbjct: 484 RTSIFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEI 305
Query: 1128 MYGVSLISRFMSSPTMSHWLAAKRILRYLKGTTDLGIFYKKGGSN--MKLMAFPDSDYAG 1185
+ V+ + +FMS+P SHW KRILRYLKG+ G+ K S+ + + F D+D+A
Sbjct: 304 SFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWAS 125
Query: 1186 DLDDRRSTSRFVFMLGSGVVSWSSKKQYV 1214
+DD+RSTS LG ++SW KQ V
Sbjct: 124 AVDDKRSTSGAAVFLGPNLISWWXXKQQV 38
>CO983516
Length = 724
Score = 125 bits (313), Expect = 2e-28
Identities = 60/119 (50%), Positives = 83/119 (69%)
Frame = +2
Query: 903 FAPVARLDTIRVILEVAAQFSWEVFQLDVKSAFLHGELKEEVFVQQPKGFIRKGEEDKVY 962
F PVARL++IR++L VA ++++Q+DVKSAFL+G L EEV+V+QPKGFI D VY
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 963 RLKKALYGLKQALRAWYSRIEAYFVREDFERCPSEHILFTKSKGGRILIVSLYVDDLIF 1021
RLKKALYGLKQA RAWY R+ ++ + + + LF K ++I +YVDD++F
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVF 721
>AI959950
Length = 466
Score = 124 bits (312), Expect = 2e-28
Identities = 60/130 (46%), Positives = 91/130 (69%)
Frame = -1
Query: 837 AMSAEIESIERNQSWELTVLPKGVKPIGVKWVFKTKLNEDGDVEKFKARLVAKGYAQRHE 896
AM E++ ++N +L LPK K +GVKW+F KL+EDG V ++KARLVAKGY+Q+
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212
Query: 897 VDYTEVFAPVARLDTIRVILEVAAQFSWEVFQLDVKSAFLHGELKEEVFVQQPKGFIRKG 956
+DY + FA VARL+ I ++L A + +++Q+DVKSAFL+G +++EV+V+QP GF +
Sbjct: 211 IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32
Query: 957 EEDKVYRLKK 966
V++L K
Sbjct: 31 LHQHVFKLNK 2
>AW185460
Length = 411
Score = 122 bits (305), Expect = 1e-27
Identities = 61/106 (57%), Positives = 77/106 (72%)
Frame = +2
Query: 1123 TRPDLMYGVSLISRFMSSPTMSHWLAAKRILRYLKGTTDLGIFYKKGGSNMKLMAFPDSD 1182
TRPD+MY SL+SRFM SP+ H+ A KRILRYL+GT GI+Y +N +L+ + DSD
Sbjct: 92 TRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAFGIWYTTE-TNSELLGYTDSD 268
Query: 1183 YAGDLDDRRSTSRFVFMLGSGVVSWSSKKQYVVALSTTEAEYIAAA 1228
+AG DD +STS + F LGSG+ SW+SKKQ VA ST EAEY+A A
Sbjct: 269 WAGSTDDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAEYVAVA 406
Score = 35.0 bits (79), Expect = 0.22
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 977 AWYSRIEAYFVREDFERCPSEHILFTKSKGGR 1008
AWYSRI YF+ F R SE L+ KS+ R
Sbjct: 2 AWYSRINQYFMDRGFRRSKSEPTLYIKSQATR 97
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 122 bits (305), Expect = 1e-27
Identities = 55/123 (44%), Positives = 85/123 (68%)
Frame = +1
Query: 1010 LIVSLYVDDLIFTGNDRVMCDEFKSSMMLEFDMSDLGKMKYFLGVEVKQC*DGIFIC*RR 1069
LIVSLYVDDL+ T +D + +EFK MM F+M++LG M YFLG+E+KQ + + IC R+
Sbjct: 193 LIVSLYVDDLLVTRDDARLVEEFKQEMMQAFEMTNLGLMTYFLGIEIKQSQNKVLICQRK 372
Query: 1070 YARDVLARFDMRDSNAVKNPTVPGTKLSKDEGGVRVDETLFKQVVGSLMYLTVTRPDLMY 1129
YA+++L +F M + +V P K +K +G ++DE ++ ++G LMYLT TRPD+++
Sbjct: 373 YAKEILKKFQMEECKSVSTPMNQKEKFNKVDGADKIDEGYYRSLIGCLMYLTATRPDILF 552
Query: 1130 GVS 1132
+S
Sbjct: 553 AIS 561
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,657,369
Number of Sequences: 63676
Number of extensions: 787016
Number of successful extensions: 5445
Number of sequences better than 10.0: 182
Number of HSP's better than 10.0 without gapping: 4904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5263
length of query: 1332
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1223
effective length of database: 5,698,948
effective search space: 6969813404
effective search space used: 6969813404
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0346.12