BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0340.11
(420 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC230962 weakly similar to UP|Q9MAH6 (Q9MAH6) F12M16.15, partial... 371 e-103
TC203869 similar to UP|Q8L7Y2 (Q8L7Y2) At1g53800/T18A20_4, parti... 118 4e-27
BE660465 78 7e-15
TC232300 55 6e-08
TC216791 similar to UP|O23144 (O23144) Proton pump interactor (A... 35 0.083
TC225910 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, part... 33 0.18
TC203807 similar to UP|Q8L9H4 (Q8L9H4) CONSTANS-like B-box zinc ... 33 0.24
AI855708 33 0.24
BM094198 33 0.24
TC219466 33 0.24
TC206039 32 0.41
TC221047 similar to UP|Q6K784 (Q6K784) IgE autoantigen-like, par... 32 0.53
TC203824 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor... 32 0.53
NP004853 nodulin 32 0.70
TC225908 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, part... 32 0.70
TC203308 32 0.70
CO983030 31 0.91
TC218154 similar to GB|AAF87026.1|9295720|AC006535 T24P13.5 {Ara... 30 1.6
TC216886 weakly similar to UP|BIR3_HUMAN (Q13489) Baculoviral IA... 30 2.0
TC205778 weakly similar to UP|Q7TPA6 (Q7TPA6) Ab1-042, partial (... 30 2.0
>TC230962 weakly similar to UP|Q9MAH6 (Q9MAH6) F12M16.15, partial (35%)
Length = 882
Score = 371 bits (953), Expect = e-103
Identities = 189/260 (72%), Positives = 217/260 (82%)
Frame = +3
Query: 91 ESLSRKAVKERMRRFKIGLANKGRVPWNKGRKHSAETRERIKRRTSEALREPKVRKKMAE 150
+SLS + +KER+RR +IGLANKG+VPWNKGRKHSAETRERI++RT EALR+PKVRKKMAE
Sbjct: 18 DSLSEEVLKERIRRMRIGLANKGKVPWNKGRKHSAETRERIRQRTLEALRDPKVRKKMAE 197
Query: 151 HPRFHSDKIKEKISYSLRRVWQERLKSKRFREQIFLSWEQCIANAAKKGGCGQEELDWDS 210
HP HSD+ K KIS SLRRVW ERLKSKR EQ FLSW Q IANAA+KGG GQEELDWDS
Sbjct: 198 HPHSHSDQTKAKISDSLRRVWHERLKSKRLVEQFFLSWAQSIANAARKGGIGQEELDWDS 377
Query: 211 YNKIKEQLELQQLLQAEEKEKEKLMAIARAEKFIQSWSECLAKEAKKGGSGEKELDWDSY 270
YNKIK+QLEL LLQ+++K KEKLMA+A A+ IQSW E +AK AKKGGSGE+ELDWDSY
Sbjct: 378 YNKIKQQLELHHLLQSKKKGKEKLMAVAGAKNIIQSWKESIAKAAKKGGSGEQELDWDSY 557
Query: 271 EKIQEEMFLLNQIRRTTEKAKAKERARTKAEKEARIKAIKKVMLNQKKKDLRERIKGRGN 330
EKIQEEM L Q++RTTEKAK KE AR KAEKEA+IKAIK+V+L QKKKD ER K + N
Sbjct: 558 EKIQEEMVHLRQLQRTTEKAKEKEMARVKAEKEAQIKAIKRVILTQKKKDHLERAKLKRN 737
Query: 331 IKSQLCKNANEDGEAALEIT 350
IKS C NA E G+ +LE+T
Sbjct: 738 IKSHPCGNAKE-GKGSLEVT 794
Score = 37.0 bits (84), Expect = 0.017
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Frame = +1
Query: 253 KEAKKGGSGEKELDWDSYEKIQEEMFLLNQIRRTTEKAKAKERARTKAEKEARIKAIKKV 312
K+ +K G G K L + ++ +++ F ++ + K K K+ R K +K
Sbjct: 505 KQRRKEGVGNKNLIGIAMKRYKKKWFTSVNFSVLQKRQRKKRWQG*KQRKKHR*KQLKG* 684
Query: 313 MLNQKKKDLRERIKGRGN---IKSQLCKNANEDGEAALEITQQFKLDTKLTKINISKNIN 369
++KK + + G I ++ + A + QFKL T++TKI+IS+N N
Sbjct: 685 SSLKRKKII*RGLN*NGI*RVIPVEMQRKAKVPWKLL-----QFKLCTEVTKIHISENFN 849
Query: 370 SEVAREGGFSN 380
EV RE N
Sbjct: 850 GEVPREQDVCN 882
>TC203869 similar to UP|Q8L7Y2 (Q8L7Y2) At1g53800/T18A20_4, partial (43%)
Length = 1750
Score = 118 bits (296), Expect = 4e-27
Identities = 53/133 (39%), Positives = 84/133 (62%)
Frame = +3
Query: 99 KERMRRFKIGLANKGRVPWNKGRKHSAETRERIKRRTSEALREPKVRKKMAEHPRFHSDK 158
+E++RR +I ANKG PWNKGRKH+ ET ++IK RT A++ PKV+ K+ + +
Sbjct: 303 REKLRRLRISKANKGNTPWNKGRKHTPETLQKIKERTRLAMQNPKVKMKLINLGHAQTTE 482
Query: 159 IKEKISYSLRRVWQERLKSKRFREQIFLSWEQCIANAAKKGGCGQEELDWDSYNKIKEQL 218
++KI +RR W++R K +E W+ IA A+++G GQEEL W+SY + EQL
Sbjct: 483 TRKKIGVGVRRRWEKRRGKKMVQESCCTEWQNLIAEASRQGYVGQEELQWNSYETVNEQL 662
Query: 219 ELQQLLQAEEKEK 231
+ L+ E++++
Sbjct: 663 KQDWLMSVEQRKQ 701
>BE660465
Length = 716
Score = 78.2 bits (191), Expect = 7e-15
Identities = 36/88 (40%), Positives = 57/88 (63%)
Frame = +3
Query: 99 KERMRRFKIGLANKGRVPWNKGRKHSAETRERIKRRTSEALREPKVRKKMAEHPRFHSDK 158
+E++RR +I ANKG +PWNKGRKH+ ET ++IK RT A++ PKV+ K+ + +
Sbjct: 324 REKLRRMRISKANKGNIPWNKGRKHTPETLQKIKERTRLAMQNPKVKMKLVNLGHAQTSE 503
Query: 159 IKEKISYSLRRVWQERLKSKRFREQIFL 186
++KI +RR W E+ + K+ + I L
Sbjct: 504 TRKKIGAXVRRRW-EKXRGKKMVQGILL 584
>TC232300
Length = 635
Score = 55.1 bits (131), Expect = 6e-08
Identities = 26/39 (66%), Positives = 32/39 (81%)
Frame = +1
Query: 382 IYPTYNKLDLEVIKREKLRKEASFADRIQAARLKKGNLH 420
I+PT NK LE+IKREK++KE S A++IQAAR KKG LH
Sbjct: 25 IFPTXNKXXLELIKREKMQKEVSLAEQIQAARDKKGKLH 141
>TC216791 similar to UP|O23144 (O23144) Proton pump interactor
(AT4g27500/F27G19_100), partial (25%)
Length = 1385
Score = 34.7 bits (78), Expect = 0.083
Identities = 48/211 (22%), Positives = 92/211 (42%), Gaps = 19/211 (9%)
Frame = +3
Query: 129 ERIKRRTSEAL-----REPKVRKKMAEHPRFHSDKIKEKISYSLRRVWQERLKSKRFREQ 183
E K +EAL ++PK K + + K +K S + R LKSK +
Sbjct: 390 EEPKPAEAEALPKTFTKQPKEEPKPSPQETLPAQKESKKRSKNKGR----DLKSKPESKD 557
Query: 184 IFLSWEQCIANAAKKGGCGQEELDWDSYNKIKEQLELQQLLQAEEK-----EKEKLMAIA 238
+ + E N K+ + E+D ++K + E+ + QA E+ EK A
Sbjct: 558 VAETDEYEFKNPQKEAPAKEPEIDPAKLKEMKREEEIAKAKQALERKKKLAEKAAAKAAI 737
Query: 239 RAEKFIQSWSECLAKEAKKGGSGEKELDWDSYEKIQEEMFLLNQIRRTTEKAKAKERART 298
RA+K + + K+AKK SG + + ++ ++E+ + + + + +A +
Sbjct: 738 RAQKEAEKKLKDREKKAKK-KSGTAAVA-NPEDEPKDEVVEVTEPEKINDDVQAPAPVKE 911
Query: 299 KAEKEARIK---------AIKKVMLNQKKKD 320
K +KE+ I+ +I K ++ +KK +
Sbjct: 912 KVQKESGIRSRGRARGPDSIPKAIIKRKKSN 1004
>TC225910 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, partial (32%)
Length = 1272
Score = 33.5 bits (75), Expect = 0.18
Identities = 20/58 (34%), Positives = 31/58 (52%)
Frame = +2
Query: 289 KAKAKERARTKAEKEARIKAIKKVMLNQKKKDLRERIKGRGNIKSQLCKNANEDGEAA 346
KA A+ + +TKAE+EAR+ A K ++ K L E +K +++ A E E A
Sbjct: 473 KAYAEMQEKTKAEEEARVAAEKAREASESAKKLEEEVKRLSQQETRAASLAQEAQEKA 646
>TC203807 similar to UP|Q8L9H4 (Q8L9H4) CONSTANS-like B-box zinc finger
protein-like, partial (49%)
Length = 1780
Score = 33.1 bits (74), Expect = 0.24
Identities = 27/92 (29%), Positives = 39/92 (42%)
Frame = +1
Query: 43 SLQRVLSIEELQINVDDDSDNQSETSVDSSDYLNGGDGVVGLSDSLEIESLSRKAVKERM 102
SL + +S L + V D + S+ S S ++GG G L + R K +
Sbjct: 856 SLSQSVSSSSLDVGVVPDGNTVSDMSYSSGIVVSGGQGATQLCGMDREARVLRYREKRKN 1035
Query: 103 RRFKIGLANKGRVPWNKGRKHSAETRERIKRR 134
R+F+ + RK AETR RIK R
Sbjct: 1036RKFE-------KTIRYASRKAYAETRPRIKGR 1110
>AI855708
Length = 394
Score = 33.1 bits (74), Expect = 0.24
Identities = 20/58 (34%), Positives = 31/58 (52%)
Frame = +3
Query: 289 KAKAKERARTKAEKEARIKAIKKVMLNQKKKDLRERIKGRGNIKSQLCKNANEDGEAA 346
KA A+ + +TKAE+EAR+ A K ++ K L E +K +++ A E E A
Sbjct: 144 KAYAEMQDKTKAEEEARVAAEKAREASESAKKLEEEVKRLSQQETRAASLAQEAQEKA 317
>BM094198
Length = 398
Score = 33.1 bits (74), Expect = 0.24
Identities = 13/40 (32%), Positives = 22/40 (54%)
Frame = +3
Query: 228 EKEKEKLMAIARAEKFIQSWSECLAKEAKKGGSGEKELDW 267
+KEK K+ + RA +++W E LA++ G K + W
Sbjct: 78 KKEKRKIRGLVRATLMLKNWKEELARKVNGSGISTKRVKW 197
>TC219466
Length = 548
Score = 33.1 bits (74), Expect = 0.24
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 350 TQQFKLDTKLTKINISKNINSEVAREGGFSNSIYPTYNKLDLEVIKREKLRKEASFADRI 409
T+++ L+TK + N +S A EGG SNS + +LE ++RE K +
Sbjct: 69 TEEYSLETK-----V*SNSSSREAMEGGISNSTATGTTESELEALQREHEEKNMKIKELK 233
Query: 410 QAARLKKGNL 419
+ L K L
Sbjct: 234 RQIELTKNRL 263
>TC206039
Length = 834
Score = 32.3 bits (72), Expect = 0.41
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = -2
Query: 265 LDWDSYEKIQEEMFLL-NQIRRTTEKAKAKERARTKAEKEARIKAIKKVMLNQKKKDLRE 323
L +D YE I +FLL + ++ +K K K++ + K +K+ + K KK+ +KKK ++
Sbjct: 320 LQYDDYEWIV--IFLL*KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKIKKKKKKKKKKK 147
Query: 324 RIKGRGNIKSQLCKNANEDG 343
+ G + + K + G
Sbjct: 146 KXXXGGGGEPKXXKKKEKRG 87
>TC221047 similar to UP|Q6K784 (Q6K784) IgE autoantigen-like, partial (61%)
Length = 763
Score = 32.0 bits (71), Expect = 0.53
Identities = 30/117 (25%), Positives = 54/117 (45%), Gaps = 6/117 (5%)
Frame = +2
Query: 197 KKGGCGQEELDWDSYNKIKEQLELQQLLQAEEKEKEKLMAIARAEKFIQSWSECLAKEA- 255
K+ G +E ++W N K++ +L ++ EEKE +K I R E+ + KEA
Sbjct: 26 KERGTLKESIEWGGRNMDKKKSKLVGIVDDEEKEAQKTREI-RIERTDEFGRILTPKEAF 202
Query: 256 -----KKGGSGEKELDWDSYEKIQEEMFLLNQIRRTTEKAKAKERARTKAEKEARIK 307
K G G ++ + K E + Q++ + + + ER R E +AR++
Sbjct: 203 RMISHKFHGKGPGKMKQEKRMKQYYEELKMKQMKSSDTPSLSVERMR---EAQARLQ 364
>TC203824 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor SC35
(CG5442-PB) (LD32469p), partial (6%)
Length = 1532
Score = 32.0 bits (71), Expect = 0.53
Identities = 29/121 (23%), Positives = 58/121 (46%), Gaps = 1/121 (0%)
Frame = +2
Query: 215 KEQLELQQLLQAEEKEKEKLMAIARAEKFIQSWSECLAKEAKKGGSGEKELDWDSYEKIQ 274
KE E + ++ EE+ ++K I E+ I+ + + + + K + ELD E ++
Sbjct: 719 KEIEERNKRIRFEEETRDK---IDEKEREIKGYRQKVEELEKVAAEKKTELD----ELVK 877
Query: 275 EEMFLLNQIRRTTEKAKAKERARTKAEKEARIKAIKKVMLNQKKKDLRERI-KGRGNIKS 333
+++ L +R + EK E + + KEA+ + LN+K + E I +G + S
Sbjct: 878 QKLRLEEALRESEEKVTGLESSILQLRKEAKEAERVIISLNEKAVETVESIDRGLNGVHS 1057
Query: 334 Q 334
+
Sbjct: 1058E 1060
>NP004853 nodulin
Length = 1431
Score = 31.6 bits (70), Expect = 0.70
Identities = 37/138 (26%), Positives = 64/138 (45%), Gaps = 14/138 (10%)
Frame = +1
Query: 223 LLQAE-EKEKEKLMAIARAEKFIQSWSECLAKEAKKGGSGEKELDWDSYEKIQEEMFLLN 281
L +AE ++E E++ A+ R EK +E L+K + + + +E +W+ Y+K + +L
Sbjct: 817 LREAELQREVERMNALTRTEKLK---AEFLSKASVEYETKVQEANWELYKKQKAAEAILF 987
Query: 282 QIRRTTEKAKAKERA---RTKAEKEARIKAIKK-----VMLNQKKKDLRERIKGR----- 328
+ + E KA A + E EA + A KK V L Q + + + G
Sbjct: 988 EKEKEAEAQKALAEAAFFSRQQEAEAELFAKKKEAEGLVALGQAQGAYLKTLLGALGGNY 1167
Query: 329 GNIKSQLCKNANEDGEAA 346
GN++ L N+ E A
Sbjct: 1168GNLRDYLMINSGMFQEIA 1221
>TC225908 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, partial (38%)
Length = 1293
Score = 31.6 bits (70), Expect = 0.70
Identities = 21/59 (35%), Positives = 29/59 (48%)
Frame = +1
Query: 288 EKAKAKERARTKAEKEARIKAIKKVMLNQKKKDLRERIKGRGNIKSQLCKNANEDGEAA 346
EKAKA+E AR AEK K + + KK L++ + + L + A E EAA
Sbjct: 553 EKAKAEEEARVAAEKANEASESAKKLEEEVKKLLQQEARA-----ASLAQEAQEKAEAA 714
>TC203308
Length = 1778
Score = 31.6 bits (70), Expect = 0.70
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = -3
Query: 267 WDSYEKIQEEMFLLNQIRRTTEKAKAKERARTKAEKEARIKAIKKVMLNQKKKDLRERIK 326
W SY I+ + FLL ++ +K K K++ + K +K+ + K KK +KKK +++ K
Sbjct: 357 WLSY--IKADPFLLR*KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 184
Score = 28.5 bits (62), Expect = 5.9
Identities = 16/56 (28%), Positives = 28/56 (49%)
Frame = -3
Query: 284 RRTTEKAKAKERARTKAEKEARIKAIKKVMLNQKKKDLRERIKGRGNIKSQLCKNA 339
++ +K K K++ + K +K+ + K KK+ L K + + K RG K K A
Sbjct: 267 KKKKKKKKKKKKKKKKKKKKKKKKKKKKIFLGGPLK--KTKFKNRGREKKNFSKGA 106
>CO983030
Length = 505
Score = 31.2 bits (69), Expect = 0.91
Identities = 27/125 (21%), Positives = 59/125 (46%)
Frame = +2
Query: 213 KIKEQLELQQLLQAEEKEKEKLMAIARAEKFIQSWSECLAKEAKKGGSGEKELDWDSYEK 272
K K++ + ++ + ++K+K+K + +K + + K+ KK +K+ +K
Sbjct: 11 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 190
Query: 273 IQEEMFLLNQIRRTTEKAKAKERARTKAEKEARIKAIKKVMLNQKKKDLRERIKGRGNIK 332
+++ + ++ +K K K++ + K +K+ + K K N KKK K NIK
Sbjct: 191 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQKKKKXKNKKNTKKKKXXNMKKKIXNIK 370
Query: 333 SQLCK 337
+ K
Sbjct: 371 KKFYK 385
>TC218154 similar to GB|AAF87026.1|9295720|AC006535 T24P13.5 {Arabidopsis
thaliana;} , partial (90%)
Length = 965
Score = 30.4 bits (67), Expect = 1.6
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +1
Query: 43 SLQRVLSIEELQINVDDDSDNQSETSVDSSDYLNGGDGVVGLSDSLEIESLSRKAVKER 101
S + +L EEL IN+ D +Q ET ++S L+G D + S + + ++SR+ + +
Sbjct: 586 SHRTLLETEELGINIIQDLHSQRETLLNSHKRLHGIDDAIDKSKKV-LTTMSRRITRNK 759
>TC216886 weakly similar to UP|BIR3_HUMAN (Q13489) Baculoviral IAP
repeat-containing protein 3 (Inhibitor of apoptosis
protein 1) (HIAP1) (HIAP-1) (C-IAP2) (TNFR2-TRAF
signaling complex protein 1) (IAP homolog C) (Apoptosis
inhibitor 2) (API2), partial (4%)
Length = 1137
Score = 30.0 bits (66), Expect = 2.0
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Frame = +1
Query: 194 NAAKKGGCGQEELDWDSYNKIKEQLELQQLLQAEEKEKEKLMA---------IARAEKFI 244
NA +K GQ +L N +LE + E E KL A +A+ EK
Sbjct: 40 NALRKAS-GQLDLG----NAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREK-- 198
Query: 245 QSWSECLAKEAKKGGSGEKELDWDSYEKIQEEMFLLNQIRRTTEKAKAKERARTKAEKEA 304
+ + LA E +K ++E+ D EKI + +L QIR+ ++A+ K + KA++EA
Sbjct: 199 KCLKKLLAWEKQKAKL-QQEIS-DEKEKILKTKEILVQIRQCQKEAEVKWKEELKAKEEA 372
>TC205778 weakly similar to UP|Q7TPA6 (Q7TPA6) Ab1-042, partial (16%)
Length = 2225
Score = 30.0 bits (66), Expect = 2.0
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +3
Query: 282 QIRRTTEKAKAKERARTKAEKEARIKAIKKVMLNQKKKDLRERIKGRGNIKSQLCKNANE 341
++R EKA E+ R + ++ R K KK+ +KKK+ +E+ + R K K
Sbjct: 1155 KLREEMEKA---EKDRKEKREKKREKKEKKMEKKEKKKEKKEKKERRKEEKEIKLKEGTA 1325
Query: 342 DGEAALEITQQFKLDTKL 359
+ ++FKL +KL
Sbjct: 1326 TTSHGTDDGKKFKLISKL 1379
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.130 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,915,949
Number of Sequences: 63676
Number of extensions: 192646
Number of successful extensions: 1024
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of query: 420
length of database: 12,639,632
effective HSP length: 100
effective length of query: 320
effective length of database: 6,272,032
effective search space: 2007050240
effective search space used: 2007050240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0340.11