BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0282.6
(303 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233399 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MV... 84 6e-17
AI441098 46 2e-05
TC225986 weakly similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD1203... 38 0.005
BU927182 34 0.071
BM887577 34 0.093
TC216950 33 0.16
TC221142 33 0.21
CK606020 32 0.27
TC231208 weakly similar to GB|AAT41807.1|48310367|BT014824 At2g2... 32 0.35
TC213837 31 0.79
TC223864 weakly similar to UP|Q9LIG9 (Q9LIG9) Cytochrome P450-li... 30 1.0
TC233690 weakly similar to UP|Q6K393 (Q6K393) Ankyrin 3, epithel... 30 1.8
BG649950 29 2.3
TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1... 29 2.3
TC229682 UP|Q9XIU9 (Q9XIU9) GmMYB29A2 protein, complete 29 2.3
BE823544 similar to PIR|D85433|D854 globulin-like protein [impor... 29 2.3
TC216502 similar to GB|AAF40452.1|7211981|F13M7 ESTs gb|N65605, ... 29 2.3
TC218741 29 2.3
BF068563 29 3.0
TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated anti... 29 3.0
>TC233399 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE11_17
{Arabidopsis thaliana;} , partial (17%)
Length = 425
Score = 84.3 bits (207), Expect = 6e-17
Identities = 40/55 (72%), Positives = 47/55 (84%)
Frame = -3
Query: 249 EENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQSEAKDMLNIHR 303
E REFVVHVPLPDEKEIE+ VLEKKK +LL++Y SE L++EQ+EAKDMLNI R
Sbjct: 423 ERERREFVVHVPLPDEKEIERRVLEKKKKDLLSRYASEGLVEEQTEAKDMLNIQR 259
>AI441098
Length = 411
Score = 45.8 bits (107), Expect = 2e-05
Identities = 21/32 (65%), Positives = 27/32 (83%)
Frame = -1
Query: 272 LEKKKMELLNKYVSEDLMDEQSEAKDMLNIHR 303
LEKKK +LL++Y E L++EQ+EAKDMLNI R
Sbjct: 411 LEKKKKDLLSRYAVEGLVEEQTEAKDMLNIQR 316
>TC225986 weakly similar to UP|Q9W1I6 (Q9W1I6) CG18426-PA (LD12035p), partial
(13%)
Length = 1553
Score = 38.1 bits (87), Expect = 0.005
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +2
Query: 223 REILREEEEDVVEEERMRG-REMKERLEENEREFVVHVP----LPDEKEIEKMVLEKKKM 277
RE+ R E E E ER+R RE + R+EE ER++ ++ EKE E+ ++K+
Sbjct: 56 RELERYERE--AERERVRKEREQRRRVEEAERQYETYLKDWEYREREKEKERQYEKEKEK 229
Query: 278 ELLNKYVSEDLMDEQSEAKD 297
E K E L DE+ E +D
Sbjct: 230 ERERKRRKEILYDEEDEDED 289
Score = 35.4 bits (80), Expect = 0.032
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 14/146 (9%)
Frame = +2
Query: 170 RDDEDGILERLEPSAEAAMRREAAE--------EWYRLDRIRQEARKGVKSGEVAEVSAA 221
R + + ER+ E R E AE +W +R +++ R+ K E
Sbjct: 68 RYEREAERERVRKEREQRRRVEEAERQYETYLKDWEYREREKEKERQYEKEKEKERERKR 247
Query: 222 VREILREEEEDVVEEERMRGR------EMKERLEENEREFVVHVPLPDEKEIEKMVLEKK 275
+EIL +EED E+ R R R + K+RL E E + V +KE E++ KK
Sbjct: 248 RKEILY-DEEDEDEDSRKRWRRSVIEEKRKKRLREKEDDLV-----DRQKEEEEIAEAKK 409
Query: 276 KMELLNKYVSEDLMDEQSEAKDMLNI 301
K E +EQ +D L +
Sbjct: 410 KAE-----------EEQKRQRDALKL 454
>BU927182
Length = 447
Score = 34.3 bits (77), Expect = 0.071
Identities = 28/89 (31%), Positives = 46/89 (51%)
Frame = +3
Query: 188 MRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEEDVVEEERMRGREMKER 247
+R+ +E +L + R++ + GE V R RE E++V +E R R +E+++
Sbjct: 18 LRQMISERRKKLQKERKKEFEKEHEGERVRVREKDR---REREKEVEKERREREKEVEKD 188
Query: 248 LEENEREFVVHVPLPDEKEIEKMVLEKKK 276
E E+E V EKE+EK EK+K
Sbjct: 189 RREREKE-VEKDRREREKEVEKDRREKEK 272
Score = 34.3 bits (77), Expect = 0.071
Identities = 31/121 (25%), Positives = 61/121 (49%), Gaps = 1/121 (0%)
Frame = +3
Query: 178 ERLEPSAEAAMRREAAEEWYRL-DRIRQEARKGVKSGEVAEVSAAVREILREEEEDVVEE 236
++L+ + +E E R+ ++ R+E K V+ E E V + RE E++V ++
Sbjct: 45 KKLQKERKKEFEKEHEGERVRVREKDRREREKEVEK-ERREREKEVEKDRREREKEVEKD 221
Query: 237 ERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNKYVSEDLMDEQSEAK 296
R R +E+++ E E+E V EKE+EK E++K + ++ E+ + + +
Sbjct: 222 RREREKEVEKDRREKEKE-VEKDRREKEKEVEKDRREREKEVVKDRKKIENDKEREQQHG 398
Query: 297 D 297
D
Sbjct: 399 D 401
>BM887577
Length = 427
Score = 33.9 bits (76), Expect = 0.093
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 282 KYVSEDLMDEQSEAKDMLNIHR 303
+Y SE L++EQ EAKDMLNI R
Sbjct: 1 RYASEGLVEEQIEAKDMLNIQR 66
>TC216950
Length = 873
Score = 33.1 bits (74), Expect = 0.16
Identities = 22/72 (30%), Positives = 37/72 (50%)
Frame = +2
Query: 217 EVSAAVREILREEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKK 276
E + V E +R+ E+ ++ E ++ E++ RLEE + V EKE E ++E K+
Sbjct: 239 ETAKRVEEAIRKRVEESLKSEEVQV-EIERRLEEGRKRLNDEVAAQLEKEKEAALIEAKQ 415
Query: 277 MELLNKYVSEDL 288
E + EDL
Sbjct: 416 KEEQARKEKEDL 451
Score = 28.9 bits (63), Expect = 3.0
Identities = 30/132 (22%), Positives = 57/132 (42%), Gaps = 8/132 (6%)
Frame = +2
Query: 173 EDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEED 232
E+ I +R+E S ++ E ++R +E RK + EVA +E E +
Sbjct: 257 EEAIRKRVEESLKSE------EVQVEIERRLEEGRKRLND-EVAAQLEKEKEAALIEAKQ 415
Query: 233 VVEEERMRGREMKERLEEN--------EREFVVHVPLPDEKEIEKMVLEKKKMELLNKYV 284
E+ R +++ LEEN RE + +E+ E ++++K E + K
Sbjct: 416 KEEQARKEKEDLERMLEENRRKVEEAQRREALEQQRREEERYKELEEMQRQKEEAMRKKK 595
Query: 285 SEDLMDEQSEAK 296
E+ + ++ K
Sbjct: 596 HEEEQERLNQIK 631
>TC221142
Length = 475
Score = 32.7 bits (73), Expect = 0.21
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -2
Query: 234 VEEERMRGREMKERLEENEREFVV 257
+E ER RGR M ERLEENE +V
Sbjct: 300 IESERERGRGMDERLEENESSLLV 229
>CK606020
Length = 340
Score = 32.3 bits (72), Expect = 0.27
Identities = 20/62 (32%), Positives = 33/62 (52%)
Frame = +1
Query: 217 EVSAAVREILREEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKK 276
E+ ++ E EEEE+ EEE E++E EE E E E+E+E+ +E ++
Sbjct: 178 EIDPSLDEEEEEEEEEEEEEEEEEEEEIEEEEEEEEEEV--------EEEVEEEEVEGEE 333
Query: 277 ME 278
+E
Sbjct: 334 VE 339
>TC231208 weakly similar to GB|AAT41807.1|48310367|BT014824 At2g27740
{Arabidopsis thaliana;} , partial (96%)
Length = 729
Score = 32.0 bits (71), Expect = 0.35
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 20/151 (13%)
Frame = +1
Query: 170 RDDEDGILERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKS--GEVAEVSAAVREILR 227
RDD++ E + SA A R + E ++R + E R V + G V E + + EI R
Sbjct: 163 RDDKE---EEMSRSALAMFRAKEEE----IERRKMEVRDKVHAYLGRVEEETKRLAEI-R 318
Query: 228 EEEEDVVEEERMR-----------GREMK---ERLEENEREFVVHVPLPDEKEIEKMVLE 273
EE E + + R +E+K + + ERE+ + + +EK EK L
Sbjct: 319 EELEGLTDPLRKEVAIVRKKIDSVNKELKPLGQTCQRKEREYKEALEVFNEKNKEKAQLV 498
Query: 274 KKKMELLNKYVSEDL----MDEQSEAKDMLN 300
K MEL+ + SE L ++E S+ D L+
Sbjct: 499 TKLMELVTE--SEKLRMKKLEELSKNLDTLH 585
>TC213837
Length = 1021
Score = 30.8 bits (68), Expect = 0.79
Identities = 21/70 (30%), Positives = 40/70 (57%)
Frame = +1
Query: 223 REILREEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNK 282
++I +E+ED ++ + E K+ E+ E + V PLP+EK +V K+ E +NK
Sbjct: 757 KKIEEKEKEDKLDNKLENELEDKKENEKQE-DLKVKNPLPEEKL--PVVQIPKQDEKVNK 927
Query: 283 YVSEDLMDEQ 292
++ E L +++
Sbjct: 928 FIKEPLKEKE 957
>TC223864 weakly similar to UP|Q9LIG9 (Q9LIG9) Cytochrome P450-like protein,
partial (5%)
Length = 561
Score = 30.4 bits (67), Expect = 1.0
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Frame = +2
Query: 223 REILREEEEDVVEEERMRGREMKE------------RLEENEREFVVHVPLPDEKEIEKM 270
RE R+EE++ ++E+R R K+ + +EN+ E + EKE++++
Sbjct: 212 REQERKEEKNKIDEKRKHERREKKEKSGDKKKSETVKKDENQEERKIQSLFMREKEVKRV 391
Query: 271 VLEKKKMELL 280
+L ++ M LL
Sbjct: 392 MLARQPMYLL 421
>TC233690 weakly similar to UP|Q6K393 (Q6K393) Ankyrin 3, epithelial isoform
a-like, partial (13%)
Length = 1024
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/67 (29%), Positives = 29/67 (42%)
Frame = -3
Query: 67 GEHRLRDLNDEINKLIREKSHWERRIVELGGPNYTRHSAKMTDLDGNIVDVPNPSGRGPG 126
GE RD+ DE ++ + + R E+GG + R A D+DG I + G G
Sbjct: 482 GEEERRDVGDEFLEVEADLAGGLREEEEVGGGDLERDGAGEVDVDGGIDNAAECQGEIAG 303
Query: 127 YRYFGAA 133
F A
Sbjct: 302 VGGFEEA 282
>BG649950
Length = 228
Score = 29.3 bits (64), Expect = 2.3
Identities = 20/42 (47%), Positives = 25/42 (58%)
Frame = +2
Query: 223 REILREEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDE 264
RE RE E + E ER R RE +ER E EREFV+ L ++
Sbjct: 5 RERERERERER-ERERERERE-REREREREREFVIDPSLVEQ 124
>TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(70%)
Length = 2075
Score = 29.3 bits (64), Expect = 2.3
Identities = 23/69 (33%), Positives = 30/69 (43%)
Frame = +2
Query: 214 EVAEVSAAVREILREEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLE 273
E EV V E EEE + EEE E +E EE E E V +++ E +
Sbjct: 122 EYEEVEEEVEEEEVEEEVEEEEEEEEEDEEEEEEEEEEEEENDVVKQQQQQQQDEDDIPI 301
Query: 274 KKKMELLNK 282
K +E L K
Sbjct: 302 SKLLEPLGK 328
Score = 28.5 bits (62), Expect = 3.9
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +2
Query: 204 QEARKGVKSGEVAEVSAAVREILREEEEDVVEEERMRGREMKERLEENEREFVVHVPLPD 263
QE + + E EV V E EEEED EEE E +E EEN+ D
Sbjct: 119 QEYEEVEEEVEEEEVEEEVEEEEEEEEEDEEEEE-----EEEEEEEENDVVKQQQQQQQD 283
Query: 264 EKE--IEKMVLEKKKMELLN 281
E + I K++ K +LLN
Sbjct: 284 EDDIPISKLLEPLGKDQLLN 343
>TC229682 UP|Q9XIU9 (Q9XIU9) GmMYB29A2 protein, complete
Length = 1249
Score = 29.3 bits (64), Expect = 2.3
Identities = 21/64 (32%), Positives = 28/64 (42%), Gaps = 3/64 (4%)
Frame = +3
Query: 126 GYRYFGAAKKLPGVRELFDKP---PELRKRRTRYDIYKRIDAAYYGYRDDEDGILERLEP 182
G R+ A KLPG + K L+KR DI KR+ D L +LEP
Sbjct: 339 GNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNSDIQKRVSKPRIKRSDSNSSTLTQLEP 518
Query: 183 SAEA 186
++ A
Sbjct: 519 TSSA 530
>BE823544 similar to PIR|D85433|D854 globulin-like protein [imported] -
Arabidopsis thaliana, partial (10%)
Length = 559
Score = 29.3 bits (64), Expect = 2.3
Identities = 18/67 (26%), Positives = 32/67 (46%)
Frame = -1
Query: 21 EEKKKPKERRPFLATECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINK 80
E+ K+ +ERR E D E +W ++ RE G+ ++ E + R E ++
Sbjct: 373 EQAKREQERRERRRQEEEDEEEPTRWERRGRREKGKSPEGVEWE---QEEARRQQAESDR 203
Query: 81 LIREKSH 87
+ E+SH
Sbjct: 202 QVEEQSH 182
>TC216502 similar to GB|AAF40452.1|7211981|F13M7 ESTs gb|N65605, gb|N38087,
gb|T20485, gb|T13726, gb|N38339, gb|F15440 and gb|N97201
come from this gene. {Arabidopsis thaliana;} , partial
(94%)
Length = 1551
Score = 29.3 bits (64), Expect = 2.3
Identities = 30/104 (28%), Positives = 49/104 (46%), Gaps = 16/104 (15%)
Frame = +2
Query: 189 RREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEED----------VVEEER 238
R++ EE R++R R++ R + + E R EEE+ V +EE
Sbjct: 692 RKKKEEEEKRMEREREKER--------IRIGKELLEAKRIEEENERKRLLALKKVEKEEE 847
Query: 239 MRGRE-MKERLEENEREFVVHVPLPDE-----KEIEKMVLEKKK 276
R RE +K++LEE++ E + LP E K ++E+KK
Sbjct: 848 KRAREKIKKKLEEDKAERRRRLGLPPEEPSAAKPSPAPIVEEKK 979
>TC218741
Length = 761
Score = 29.3 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 18/28 (63%)
Frame = +1
Query: 1 MARNEEKAQSMLNRFITMKAEEKKKPKE 28
M NE+ A S+ N +TM + E+ KPKE
Sbjct: 565 MKINEDNAYSLTNENVTMSSVEEPKPKE 648
>BF068563
Length = 328
Score = 28.9 bits (63), Expect = 3.0
Identities = 25/79 (31%), Positives = 34/79 (42%), Gaps = 3/79 (3%)
Frame = +2
Query: 178 ERLEPSAEAAMRREAAEEWYRLDRIRQEARKGVKSGEVAEVSAAVREILREEEEDVVEEE 237
+R +P + RR R+R +R+G E E A REE VVEEE
Sbjct: 116 DRFQPELHSRRRRR---------RLRLRSRRGEPESENCEEEGA-----REEG*SVVEEE 253
Query: 238 ---RMRGREMKERLEENER 253
R R R+ + R E + R
Sbjct: 254 QERRRRRRDFRRRREASVR 310
>TC231640 homologue to UP|Q918P0 (Q918P0) Latency associated antigen, partial
(7%)
Length = 466
Score = 28.9 bits (63), Expect = 3.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 228 EEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEK 265
EEEE+ EEE E +E+ EE E E V V + ++K
Sbjct: 52 EEEEEEEEEEEEEEEEEEEKEEEEEEEGNVLVIIDEDK 165
Score = 28.5 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 27/55 (48%)
Frame = +1
Query: 228 EEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVLEKKKMELLNK 282
EEEE+ EEE E +E EE E E + + DE + + L KK + + +
Sbjct: 49 EEEEEEEEEEEEEEEEEEEEKEEEEEEEGNVLVIIDEDKHDTEELNKKCEDFIKR 213
Score = 27.7 bits (60), Expect = 6.7
Identities = 23/61 (37%), Positives = 29/61 (46%), Gaps = 5/61 (8%)
Frame = +1
Query: 227 REEEEDVVEEERMRGREMKERLEENEREFVVHVPLPDEKEIEKMVL-----EKKKMELLN 281
+EEEE+ EEE E +E EE E E +E+E E VL +K E LN
Sbjct: 22 QEEEEEKEEEEEEEEEEEEEEEEEEEEE-----EKEEEEEEEGNVLVIIDEDKHDTEELN 186
Query: 282 K 282
K
Sbjct: 187 K 189
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,614,936
Number of Sequences: 63676
Number of extensions: 109556
Number of successful extensions: 700
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of query: 303
length of database: 12,639,632
effective HSP length: 97
effective length of query: 206
effective length of database: 6,463,060
effective search space: 1331390360
effective search space used: 1331390360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0282.6