TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0249.1
         (68 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD399280 weakly similar to GP|16648801|gb At2g24280/F27D4.19 {Ar...   116  2e-27
TC203394 weakly similar to UP|Q9FLH1 (Q9FLH1) Lysosomal Pro-X ca...    91  1e-19
TC205671 similar to GB|AAO23606.1|27764970|BT003041 At2g27920/T1...    26  4.5
BE661296                                                               25  5.9
TC227355 similar to UP|TSSP_HUMAN (Q9NQE7) Thymus-specific serin...    25  5.9
TC227354                                                               25  7.7
TC226260 similar to UP|O22285 (O22285) Expressed protein (At2g39...    25  7.7

>CD399280 weakly similar to GP|16648801|gb At2g24280/F27D4.19 {Arabidopsis
           thaliana}, partial (20%)
          Length = 482

 Score =  116 bits (291), Expect = 2e-27
 Identities = 55/67 (82%), Positives = 62/67 (92%)
 Frame = -1

Query: 2   IEKDLKRSASNIIFYNGLRDPWSGGGVLKNISKTLVAIVAKEGAHHRDLRYSTKEDPKWL 61
           IE+ LKRSASNIIF+NGLRDPWS GGVLK ISKT+VAIVAK+GAHH DLRYS+KEDP+WL
Sbjct: 383 IERVLKRSASNIIFFNGLRDPWSAGGVLKTISKTIVAIVAKKGAHHVDLRYSSKEDPQWL 204

Query: 62  KDVRIKE 68
           KDVR +E
Sbjct: 203 KDVRTQE 183


>TC203394 weakly similar to UP|Q9FLH1 (Q9FLH1) Lysosomal Pro-X
           carboxypeptidase, partial (50%)
          Length = 1017

 Score = 90.5 bits (223), Expect = 1e-19
 Identities = 43/68 (63%), Positives = 52/68 (76%)
 Frame = +1

Query: 1   DIEKDLKRSASNIIFYNGLRDPWSGGGVLKNISKTLVAIVAKEGAHHRDLRYSTKEDPKW 60
           DI   LK+  SNIIF NGL DPWSGGGVL+NIS+++V++V +EGAHH DLR STK DP W
Sbjct: 562 DIHATLKKFGSNIIFSNGLLDPWSGGGVLQNISESVVSLVTEEGAHHIDLRSSTKNDPDW 741

Query: 61  LKDVRIKE 68
           L + R  E
Sbjct: 742 LVEQRETE 765


>TC205671 similar to GB|AAO23606.1|27764970|BT003041 At2g27920/T1E2.16
           {Arabidopsis thaliana;} , partial (75%)
          Length = 1695

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 11/29 (37%), Positives = 18/29 (61%)
 Frame = +2

Query: 1   DIEKDLKRSASNIIFYNGLRDPWSGGGVL 29
           D+E ++  S++N+ FYN L+D  S    L
Sbjct: 752 DLENEIVASSNNVDFYNFLQDSKSDSDTL 838


>BE661296 
          Length = 308

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 33  SKTLVAIVAKEGAHHRDLRYST 54
           +KTL+  VAK+G  H  LR +T
Sbjct: 242 NKTLILYVAKDGQGHHPLRSNT 177


>TC227355 similar to UP|TSSP_HUMAN (Q9NQE7) Thymus-specific serine protease
            precursor  , partial (5%)
          Length = 1722

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 10/17 (58%), Positives = 12/17 (69%)
 Frame = +2

Query: 7    KRSASNIIFYNGLRDPW 23
            K + S IIF NG +DPW
Sbjct: 1247 KIAGSKIIFTNGSQDPW 1297


>TC227354 
          Length = 698

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 9/17 (52%), Positives = 12/17 (69%)
 Frame = +1

Query: 7   KRSASNIIFYNGLRDPW 23
           K + S I+F NG +DPW
Sbjct: 250 KIAGSKIVFANGSQDPW 300


>TC226260 similar to UP|O22285 (O22285) Expressed protein (At2g39750/T5I7.5),
            partial (79%)
          Length = 2458

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 34   KTLVAIVAKEGAHHRDLRYSTKEDPK 59
            KT   +   EGA+H+   Y+  EDP+
Sbjct: 1847 KTSERVCINEGAYHKPRPYNLHEDPQ 1770


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.315    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,954,849
Number of Sequences: 63676
Number of extensions: 25757
Number of successful extensions: 109
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of query: 68
length of database: 12,639,632
effective HSP length: 44
effective length of query: 24
effective length of database: 9,837,888
effective search space: 236109312
effective search space used: 236109312
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)