BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.15
(1070 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 350 2e-96
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 349 3e-96
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 160 2e-39
BI784757 138 1e-32
BI701169 133 5e-31
AW185460 127 2e-29
CO981347 100 3e-28
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 107 3e-23
CO981879 73 1e-21
BU545438 99 1e-20
BU083646 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 97 4e-20
BI702130 weakly similar to GP|4234854|gb| pol polyprotein {Zea m... 67 1e-18
CO983154 81 3e-15
BI427153 79 1e-14
TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 ... 73 6e-13
BG359773 71 3e-12
BI425191 weakly similar to GP|14586969|gb| pol polyprotein {Citr... 68 2e-11
BI425121 66 9e-11
BI424202 64 4e-10
TC213920 60 5e-09
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 350 bits (897), Expect = 2e-96
Identities = 209/655 (31%), Positives = 332/655 (49%), Gaps = 38/655 (5%)
Frame = +1
Query: 38 RDKPQCNYCKKFGHMEKYCYSKNRHQANLAEEQEQDQYLLYATQD-------------SA 84
R K +C+YC K+GH++ +CY + H + + + +++ + SA
Sbjct: 1498 RKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMWVPKHKIVSLVVHTSLRASA 1677
Query: 85 RETGGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*KGTR 144
+E WYLDSGCS HM + NI+ V G+G+ + G G ++ + G
Sbjct: 1678 KE---DWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHD---GLP 1839
Query: 145 LISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSNISFP 204
++ VLLV L NL+SI Q+ + G+ ++F C + ++ + + + P
Sbjct: 1840 SLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTP 2019
Query: 205 LNFKYVANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLK-ESNEACERCL 263
Y ++ + ++ D+ +WH+RFGH + + +K + K +R +P+LK E C C
Sbjct: 2020 QETSY-SSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQ 2196
Query: 264 LGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWVYFLK 323
+G Q ++S + VLEL+H D+ GPM+ S RY + DDFSR TWV F++
Sbjct: 2197 IGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIR 2376
Query: 324 AKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQ 383
KS+ F VFK+ ++++ IK +RSD G+E+ + +F +FC EGI + + A PQ
Sbjct: 2377 EKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQ 2556
Query: 384 QNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWC 443
QNG+ ERK RT+ E AR ML K + WAEA+ TA YI NR T E W
Sbjct: 2557 QNGIVERKNRTLQEAARVMLHAKELPYNL-WAEAMNTACYIHNRVTLRRGTPTTLYEIWK 2733
Query: 444 GKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKKLTIS 503
G+KP+ KH +FGS CY +R K++ K+ GIFLGYST S+ YRV+N +T+ + S
Sbjct: 2734 GRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMES 2913
Query: 504 RDVEVDGNASWNWDEEKVEKNILIPTQRPQEEVE--EEAENPGEPTSPPQQQEQQ----- 556
+V VD ++ VE+++ + + E AEN T P +
Sbjct: 2914 INVVVDDLTPAR--KKDVEEDVRTSGDNVADTAKSAENAENSDSATDEPNINQPDKRPSI 3087
Query: 557 --QDLSPE---------STPRRVRFLVDVYETCNLAILEPESFEAASKQEVWVKAMEEEI 605
Q + P+ R R + V +C ++ +EP++ + A E W+ AM+EE+
Sbjct: 3088 RIQKMHPKELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEEL 3267
Query: 606 KMIEKNNTWELVDCPHGKDIIGVKWVYKTKLKP*WHYTK------AQGEASSEGL 654
+ ++N WELV P G ++IG KW++K K T+ AQG EG+
Sbjct: 3268 EQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGV 3432
Score = 57.4 bits (137), Expect = 3e-08
Identities = 85/344 (24%), Positives = 149/344 (42%)
Frame = +3
Query: 706 RDLCGATTRFRVQRQ*KQSAKTKKSSIWLEASSSSMVQSD*SVLHRSRFQEEQE*TYTIH 765
R LCGA + + ++ S+W+EASS S+V V + +R E + * ++
Sbjct: 3567 RSLCGAAKGICRSNSSRSCIQAQEGSLWIEASSKSLV*KANRVPYSARV*EGRN*QDSLC 3746
Query: 766 QDSRSAYSLTLLIRR*SYLHRK*YKDDDGVQRRHDEDLRDDRPWLDELLPRYRGKSEK*W 825
Q + I * + R D + D+ W +L +++
Sbjct: 3747 QTRC*KLDDSTDIC**HCVWRDVE*DASTFCPTDAI*I*DESCWRADLFSGTPSEADGRL 3926
Query: 826 DIYLTKEIYRRLTQEIQDVQLQACKYSTRDK*ETTEG*WSTRS*GIALQESNW*SSISDG 885
I LTK++ + QE+ D + Q K + E + * + * ++Q+ +W +I +
Sbjct: 3927 HIPLTKQVCKEHCQEVWDGKCQP*KNTCTYSLEAVKR*SWHQC*SKSVQKHDWELTIFNS 4106
Query: 886 YTTRPYVCYKSTIKIHAEPKSDTLWSMQKNPKIPARNKRVWHMVQNHNQLKVAWLHRR*L 945
T ++C + KI ++ +L S ++N +I ++ +W V + + W+ *L
Sbjct: 4107 *QT*HHLCSRCLCKISSQS*DKSLESSKENSEICKWHQ*LWDYVLSLFRFNAGWVL*C*L 4286
Query: 946 GRFCR*HEKHFRLCFLPWIGNIFLDV*EASYSCTINI*S*VCGSC*SNKSSYMASKNTRR 1005
G CR* +KHF FL + F+ EA I *S V S ++ + +
Sbjct: 4287 GWKCR*QKKHFWWMFLFGNQSYFMVQQEAELCVPIYC*SRVYCSRKQLFTTSLDEADAEG 4466
Query: 1006 YGRKTR*VYYTQLRQQISYCYGEESDASQQNKAHSNQIPLHQRS 1049
+TR + L Q Y Y +S ++QQN+AH + L+ RS
Sbjct: 4467 VQCRTR-CHDIVL*QHECY*YF*KSCSTQQNQAH*H*TSLY*RS 4595
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 349 bits (896), Expect = 3e-96
Identities = 209/652 (32%), Positives = 331/652 (50%), Gaps = 35/652 (5%)
Frame = +1
Query: 38 RDKPQCNYCKKFGHMEKYCYSKNRHQANLAEEQEQDQYLLYATQDSA----------RET 87
R K +C+YC K+GH++ +CY + H + + + +++ + A
Sbjct: 1495 RKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVPKHKAVSLVVHTSLRASA 1674
Query: 88 GGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVVESKGKGTVMVET*KGTRLIS 147
WYLDSGCS HM + NI+ V G+G+ + G G ++ + G ++
Sbjct: 1675 KEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHD---GLPSLN 1845
Query: 148 DVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDKRVEIAQVKMQKSNISFPLNF 207
VLLV L NL+SI Q+ + G+ ++F C + ++ + + + P
Sbjct: 1846 KVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQET 2025
Query: 208 KYVANIAMKAQVDDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLK-ESNEACERCLLGM 266
Y ++ + ++ D+ +WH+RFGH + + +K + K +R +P+LK E C C +G
Sbjct: 2026 SY-SSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGK 2202
Query: 267 QRRVSFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWVYFLKAKS 326
Q ++S + VLEL+H D+ GPM+ S RY + DDFSR TWV F++ KS
Sbjct: 2203 QVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKS 2382
Query: 327 EVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQNG 386
E F VFK+ ++++ IK +RSD G+E+ + F +FC EGI + + A PQQNG
Sbjct: 2383 ETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNG 2562
Query: 387 VSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCGKK 446
+ ERK RT+ E AR ML K + WAEA+ TA YI NR T E W G+K
Sbjct: 2563 IVERKNRTLQEAARVMLHAKELPYNL-WAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRK 2739
Query: 447 PSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQTKKLTISRDV 506
PS KH +FGS CY +R K++ K+ GIFLGYST S+ YRV+N +T+ + S +V
Sbjct: 2740 PSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINV 2919
Query: 507 EVDGNASWNWDEEKVEKNILIPTQRPQEEVE--EEAENPGEPT-----SPPQQQEQQ--Q 557
VD + ++ VE+++ + + E AEN T + P ++ Q
Sbjct: 2920 VVDDLSPAR--KKDVEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQ 3093
Query: 558 DLSPE---------STPRRVRFLVDVYETCNLAILEPESFEAASKQEVWVKAMEEEIKMI 608
+ P+ R R + V +C ++ +EP++ + A E W+ AM+EE++
Sbjct: 3094 KMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQF 3273
Query: 609 EKNNTWELVDCPHGKDIIGVKWVYKTKLKP*WHYTK------AQGEASSEGL 654
++N WELV P G ++IG KW++K K T+ AQG EG+
Sbjct: 3274 KRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGV 3429
Score = 55.8 bits (133), Expect = 1e-07
Identities = 90/364 (24%), Positives = 155/364 (41%)
Frame = +3
Query: 706 RDLCGATTRFRVQRQ*KQSAKTKKSSIWLEASSSSMVQSD*SVLHRSRFQEEQE*TYTIH 765
R LCGA + + ++ S+W+EASS S+V V + +R E + * +
Sbjct: 3564 RSLCGAAKGICRPDSSRSCIQAQEGSLWIEASSKSLV*KANRVPYSARV*EGRN*QDPLC 3743
Query: 766 QDSRSAYSLTLLIRR*SYLHRK*YKDDDGVQRRHDEDLRDDRPWLDELLPRYRGKSEK*W 825
Q I * + R D + D+ W +L +++
Sbjct: 3744 QTRC*KLDDCTDIC**HCVWRDVE*DASTFCSTDAI*I*DESCWRADLFSGTSSEADGGL 3923
Query: 826 DIYLTKEIYRRLTQEIQDVQLQACKYSTRDK*ETTEG*WSTRS*GIALQESNW*SSISDG 885
I LTK++ + QE+ D + Q+ K + E +G* + * ++Q+ + +I +
Sbjct: 3924 HIPLTKQVCKEHCQEVWDGECQS*KDTCTYSLEAVKG*SRHQC*SKSVQKHDRELTIFNS 4103
Query: 886 YTTRPYVCYKSTIKIHAEPKSDTLWSMQKNPKIPARNKRVWHMVQNHNQLKVAWLHRR*L 945
TR ++C + KI ++ + +L S ++N +I + +W V + + W+ *L
Sbjct: 4104 *QTRHHLCSRCLCKISSQSQDKSLDSSKENSEICKWH**LWDYVLSLFKSNAGWVL*C*L 4283
Query: 946 GRFCR*HEKHFRLCFLPWIGNIFLDV*EASYSCTINI*S*VCGSC*SNKSSYMASKNTRR 1005
G CR* +KHF L F+ EA I S V S ++ + +
Sbjct: 4284 GWKCR*QKKHFWWMLLFGKQPYFMVQQEAELCVPIYSRSRVYCSRKQLFTASLDEADAEG 4463
Query: 1006 YGRKTR*VYYTQLRQQISYCYGEESDASQQNKAHSNQIPLHQRS*DIKRDSAQVLQN*RS 1065
+TR + L Q Y Y +S ++QQN+AH + L+QRS D + +* +
Sbjct: 4464 VQCRTR-CHDIVL*QHECY*YF*KSCSTQQNQAH*H*TSLYQRSC***SDHTEAC*H*GT 4640
Query: 1066 NRRY 1069
N RY
Sbjct: 4641 NSRY 4652
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 160 bits (406), Expect = 2e-39
Identities = 79/168 (47%), Positives = 108/168 (64%)
Frame = +1
Query: 239 LLYQKNMMRDLPSLKESNEACERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTS 298
+++Q+ ++ DLP + + C+ C +G + R SF T K WR K +L+++H D+C +
Sbjct: 271 IIFQEKIVYDLPIMNILDGVCDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLC-TVEIP 447
Query: 299 SHDNNRYFILFTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEY 358
+H +N YFI F DDFS+ WVYFLK KSE FK FKA EKQ+G +K L D+G+EY
Sbjct: 448 THGDNNYFITFIDDFSKKMWVYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKGQEY 627
Query: 359 TSREFDKFCEDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSMLKEK 406
S + F E GI+ QLT Y PQ NGV+ERK +TIM+M R MLK K
Sbjct: 628 LS--YTIFFEKHGIQHQLTTKYTPQHNGVTERKNKTIMDMVRCMLKAK 765
>BI784757
Length = 430
Score = 138 bits (347), Expect = 1e-32
Identities = 65/139 (46%), Positives = 93/139 (66%)
Frame = +1
Query: 239 LLYQKNMMRDLPSLKESNEACERCLLGMQRRVSFSTCKEWRAKDVLELIHTDVCGPMRTS 298
L +Q+ M+ LP +K +E C+ CL Q R +F RAK+ LE+I++DVCGPM+T
Sbjct: 7 LSFQREMVLGLPQIKPPSEVCDGCLQCKQSRSTFKQNVPIRAKEKLEVIYSDVCGPMQTE 186
Query: 299 SHDNNRYFILFTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEY 358
S NRYFI F D+ +R WVY ++ KS+ F VF+KFK + +KQSG IK+LR++ G EY
Sbjct: 187 SLGGNRYFISFIDELTRKVWVYLIRRKSDFFEVFEKFKNMAKKQSGSLIKILRTNGGGEY 366
Query: 359 TSREFDKFCEDEGIERQLT 377
S EF +FC+ +GI ++T
Sbjct: 367 VSTEFQEFCDQQGIIHEVT 423
>BI701169
Length = 407
Score = 133 bits (334), Expect = 5e-31
Identities = 66/98 (67%), Positives = 74/98 (75%)
Frame = +2
Query: 306 FILFTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDK 365
F LF DDFSR TWVYF K K EVF FKKFKA+VEK+SG IK +RSDRG E+ S EF K
Sbjct: 113 FFLFIDDFSRKTWVYFFKHKLEVFENFKKFKAIVEKESGFKIKAMRSDRGGEF*SNEFQK 292
Query: 366 FCEDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSML 403
+C+D GI R L V PQQNGV+ERK RTI+ MARSML
Sbjct: 293 YCDDHGIRRPLMVLRSPQQNGVAERKNRTILNMARSML 406
Score = 40.8 bits (94), Expect = 0.003
Identities = 27/72 (37%), Positives = 35/72 (48%)
Frame = +3
Query: 271 SFSTCKEWRAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWVYFLKAKSEVFR 330
SF RAK +LELIHTD GP++TSS D + +F F FL R
Sbjct: 12 SFPKESNLRAKKLLELIHTDG-GPIKTSSLDKSNHFFSSLMIFQEKHGCIFLSIN*RCLR 188
Query: 331 VFKKFKALVEKQ 342
+ K K L+ K+
Sbjct: 189 ISKSSKPLLRKK 224
>AW185460
Length = 411
Score = 127 bits (320), Expect = 2e-29
Identities = 67/107 (62%), Positives = 80/107 (74%)
Frame = +1
Query: 886 YTTRPYVCYKSTIKIHAEPKSDTLWSMQKNPKIPARNKRVWHMVQNHNQLKVAWLHRR*L 945
YT VCYKS+IKIHA+PKS+TLWS +KN ++ RNK V +MV NQL++ WLHR+*L
Sbjct: 91 YTA*HNVCYKSSIKIHAKPKSNTLWSRKKNFEVSTRNKSVRYMVYYRNQLRITWLHRQ*L 270
Query: 946 GRFCR*HEKHFRLCFLPWIGNIFLDV*EASYSCTINI*S*VCGSC*S 992
GRF R*HE++ LCFL IGN+ L V EASYS TIN S V GSC*S
Sbjct: 271 GRFNR*HEEYLWLCFLTRIGNVLLGVEEASYSSTINSRSRVRGSC*S 411
Score = 36.6 bits (83), Expect = 0.061
Identities = 19/29 (65%), Positives = 21/29 (71%)
Frame = +1
Query: 740 SMVQSD*SVLHRSRFQEEQE*TYTIHQDS 768
SMV + SV H SR QEEQE* YT+HQ S
Sbjct: 1 SMV*QNQSVFHGSRIQEEQE*AYTLHQVS 87
>CO981347
Length = 624
Score = 100 bits (249), Expect(2) = 3e-28
Identities = 51/119 (42%), Positives = 73/119 (60%), Gaps = 3/119 (2%)
Frame = +2
Query: 330 RVFKKFK---ALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQNG 386
R+F KF+ L+ Q G +KVLR+D G E+ +F++FC GI+R V + P QNG
Sbjct: 101 RIF*KFRE*HTLIGNQLGTKLKVLRTDNGLEFVLEQFNEFCRKIGIKRHKIVPHTP*QNG 280
Query: 387 VSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCGK 445
++ER TI+E R ML + TF W EA T Y++NRCP++ + KTP+EAW G+
Sbjct: 281 LAERMNMTILERVRCMLLSARLPKTF-WGEAANTTSYLINRCPSSTLGFKTPMEAWSGE 454
Score = 44.3 bits (103), Expect(2) = 3e-28
Identities = 18/37 (48%), Positives = 23/37 (61%)
Frame = +3
Query: 294 PMRTSSHDNNRYFILFTDDFSRMTWVYFLKAKSEVFR 330
P R +H + YF+ DDFSR W+Y LK KSE F+
Sbjct: 3 PSRVKTHGGSSYFLTIIDDFSRRVWLYVLKNKSESFK 113
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 107 bits (267), Expect = 3e-23
Identities = 68/181 (37%), Positives = 97/181 (53%), Gaps = 1/181 (0%)
Frame = +2
Query: 224 LWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEA-CERCLLGMQRRVSFSTCKEWRAKD 282
L H R GH + LK++ +PSL++ + CE C LG R S E R
Sbjct: 311 LLHERLGHPHLSKLKIM--------VPSLEKIKDLFCESCQLGKHVRSSXRHV-ESRVDS 463
Query: 283 VLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQ 342
+IH D+ GP R SS + RYF+ F D+FS+ T V+ +K +SE+ ++ Q
Sbjct: 464 PFLVIHXDIWGPNRVSSM-SYRYFVTFIDEFSQCTRVFLMKERSEILSFLTSVNK-IKTQ 637
Query: 343 SGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSM 402
GK IK+LRSD KEY S F +GI Q + + PQQN ++ERK R ++E AR++
Sbjct: 638 FGKTIKILRSDNAKEYFSSVISPFXSAQGILHQFSCPHTPQQNDIAERKNRHLVETARTL 817
Query: 403 L 403
L
Sbjct: 818 L 820
>CO981879
Length = 576
Score = 73.2 bits (178), Expect(2) = 1e-21
Identities = 41/105 (39%), Positives = 60/105 (57%)
Frame = -1
Query: 331 VFKKFKALVEKQSGKHIKVLRSDRGKEYTSREFDKFCEDEGIERQLTVAYIPQQNGVSER 390
+FK F +++ Q IKV RSD G+EY ++ K + GI Q + PQQNGV+ER
Sbjct: 570 IFKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAER 391
Query: 391 KKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQN 435
K R + E+AR++L + + W EA+ T Y+ N+ NA QN
Sbjct: 390 KNRHLXEVARALLFQNKAPK-YXWGEAILTGTYLKNK---NA*QN 268
Score = 49.3 bits (116), Expect(2) = 1e-21
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Frame = -2
Query: 427 RCPTNAVQNKTPIEAWCGKKPS-----TKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFL 481
R P+ + +TP++ + P+ T L++FG + H+ + + KLE + + +F+
Sbjct: 284 RMPSKILNFRTPLDVFTSAFPNNRLSCTLPLKIFGCTVFVHIHEPNQGKLEPRAKKCVFV 105
Query: 482 GYSTKSKGYRVYNLQTKKLTISRDV 506
GY+ KGY+ ++ +KK ++ DV
Sbjct: 104 GYAPNQKGYKCFDPTSKKTFVTIDV 30
>BU545438
Length = 579
Score = 98.6 bits (244), Expect = 1e-20
Identities = 54/83 (65%), Positives = 62/83 (74%)
Frame = -3
Query: 988 GSC*SNKSSYMASKNTRRYGRKTR*VYYTQLRQQISYCYGEESDASQQNKAHSNQIPLHQ 1047
GSC*SN+SSY AS +T R+GRKTR* Y QLRQQIS C GEES SQQNK HSNQ+ L+Q
Sbjct: 577 GSC*SNESSYXAS*DT*RHGRKTR*AY*NQLRQQISNCNGEESSLSQQNKTHSNQVSLYQ 398
Query: 1048 RS*DIKRDSAQVLQN*RSNRRYI 1070
RS* RD ++LQN RS +I
Sbjct: 397 RS*SN*RDQTRLLQNRRSXXXHI 329
>BU083646 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (19%)
Length = 428
Score = 97.1 bits (240), Expect = 4e-20
Identities = 51/140 (36%), Positives = 82/140 (58%)
Frame = +1
Query: 68 EEQEQDQYLLYATQDSARETGGSWYLDSGCSNHMAKDESIFKNIDDSVKVKVRLGNGAVV 127
++Q Q++ L + +A + SW +DSGC+NHM D +F +D+ V KV++ N A +
Sbjct: 4 KDQSQEEQLFVVSCFAASSST*SWLIDSGCTNHMTYDRELFTELDEVVFSKVKIRNEAYI 183
Query: 128 ESKGKGTVMVET*KGTRLISDVLLVPNLKENLLSIGQMIERGYTLHFEGDVCRIYDKHDK 187
+ KGK TV + G +LIS+VL V + +NLLS+ Q++++GY + FE C I D +
Sbjct: 184 DVKGKETVAI*GHTGLKLISNVLYVSEISQNLLSVPQLLKKGYKVLFEDKNCMIKDSESR 363
Query: 188 RVEIAQVKMQKSNISFPLNF 207
V +Q +SF L+F
Sbjct: 364 EV----FNIQMKGMSFALDF 411
>BI702130 weakly similar to GP|4234854|gb| pol polyprotein {Zea mays},
partial (14%)
Length = 421
Score = 67.4 bits (163), Expect(2) = 1e-18
Identities = 38/93 (40%), Positives = 55/93 (58%)
Frame = -1
Query: 379 AYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTP 438
A+ V+ER+ RT+++M RSM + F W +A+ TA YILNR PT AV +KTP
Sbjct: 274 AWFSGSEWVAERRNRTLLDMVRSMRSNVKLPQ-FLWIDALKTAAYILNRVPTKAV-SKTP 101
Query: 439 IEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKL 471
E + G KPS +H+RV+G + + + KL
Sbjct: 100 FELFKGWKPSLRHIRVWGCPSEVRIYNPQEKKL 2
Score = 45.4 bits (106), Expect(2) = 1e-18
Identities = 26/57 (45%), Positives = 31/57 (53%), Gaps = 9/57 (15%)
Frame = -2
Query: 339 VEKQSGKHIKVLRSDRGKEYTSR---------EFDKFCEDEGIERQLTVAYIPQQNG 386
VEKQ GK IK++RSDRG EY R F KF ++ I Q T+ P QNG
Sbjct: 420 VEKQCGKQIKIVRSDRGGEYYGRYTEDGQAPGSFAKFLQEHEIVAQYTMPGSPDQNG 250
>CO983154
Length = 568
Score = 80.9 bits (198), Expect = 3e-15
Identities = 44/129 (34%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Frame = +3
Query: 380 YIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPI 439
+ PQQNG++ERK R ++E ARS++ + W +AV T+ +++NR P+++++N+ P
Sbjct: 3 HTPQQNGIAERKNRHLLETARSLMLNLNVP-IHHWGDAVLTSCFLINRMPSSSLENQIPH 179
Query: 440 EAWCGKKPSTKHL--RVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVYNLQT 497
P H+ +VFG C+ H KL ++V+ +FLGYS KGY+ Y+
Sbjct: 180 SLVFPHDPLF-HVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYKCYSPTM 356
Query: 498 KKLTISRDV 506
++ +S DV
Sbjct: 357 RRYYMSADV 383
>BI427153
Length = 422
Score = 78.6 bits (192), Expect = 1e-14
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Frame = +1
Query: 375 QLTVAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILNRCPTNAVQ 434
Q T + PQQNG++ERK ++E ARS++ + T W +AV TA +++NR P+++++
Sbjct: 4 QSTCPHTPQQNGIAERKNHHLLETARSLMLNSNVP-THHWGDAVLTACFLINRMPSSSLE 180
Query: 435 NKTPIE-AWCGKKPSTKHLRVFGSICYTHVPDVKRHKLEDKNVRGIFLGYSTKSKGYRVY 493
N+ P + +VFG C+ H KL ++V+ +FLGYS KGY Y
Sbjct: 181 NQIPHSIVFPNDLLFYVSPKVFGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQKGYTCY 360
Query: 494 NLQTKKLTISRDV 506
++ +S +V
Sbjct: 361 FPNMRRYYMSANV 399
>TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 (Fragment)
, partial (21%)
Length = 912
Score = 73.2 bits (178), Expect = 6e-13
Identities = 35/94 (37%), Positives = 52/94 (55%)
Frame = -2
Query: 413 WWAEAVYTAVYILNRCPTNAVQNKTPIEAWCGKKPSTKHLRVFGSICYTHVPDVKRHKLE 472
+W A+ A Y++N PT +QN +P E G P HLR+FG +CY R KLE
Sbjct: 899 FWNYALLHAAYLINCIPTPFLQNTSPYERLHGHIPDISHLRIFGCLCYASTIKANRKKLE 720
Query: 473 DKNVRGIFLGYSTKSKGYRVYNLQTKKLTISRDV 506
+ IF+G+ +KGY +Y+L + + SR+V
Sbjct: 719 PRAHPCIFIGFKPNTKGYMLYDLHSHNIITSRNV 618
>BG359773
Length = 382
Score = 70.9 bits (172), Expect = 3e-12
Identities = 45/113 (39%), Positives = 60/113 (52%), Gaps = 9/113 (7%)
Frame = -1
Query: 353 DRGKEYTSR---------EFDKFCEDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSML 403
DRG EY R F K + GI Q T+ IPQ NGVSE++ R +M+M SML
Sbjct: 379 DRGGEYYGRYDETEQYXGPFAKLIQKRGICAQYTMLGIPQ*NGVSEKRNRILMDMVTSML 200
Query: 404 KEKGMHNTFWWAEAVYTAVYILNRCPTNAVQNKTPIEAWCGKKPSTKHLRVFG 456
+ + W A+ +Y+LNR P+ AV KT E W + PS +HL V+G
Sbjct: 199 INLTLPISL-WMYALKIVMYLLNRVPSKAVP-KTHFELWTNRTPSIRHLDVWG 47
>BI425191 weakly similar to GP|14586969|gb| pol polyprotein {Citrus x
paradisi}, partial (7%)
Length = 423
Score = 68.2 bits (165), Expect = 2e-11
Identities = 36/87 (41%), Positives = 51/87 (58%)
Frame = +3
Query: 279 RAKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWVYFLKAKSEVFRVFKKFKAL 338
R+ +LE++HTD+C P +S RYFI F DD+S +VY L K + V +
Sbjct: 87 RSTQLLEIMHTDICRPFDVNSFGKERYFITFIDDYSHYGYVYLLHEKFQAVDVLEIHLNE 266
Query: 339 VEKQSGKHIKVLRSDRGKEYTSREFDK 365
VE+Q + +KV+RSDRG E R +DK
Sbjct: 267 VERQLDRKVKVVRSDRGGE*YKR-YDK 344
>BI425121
Length = 412
Score = 65.9 bits (159), Expect = 9e-11
Identities = 49/146 (33%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Frame = +3
Query: 304 RYFILFTDDFSRMTWVYFLKAKSEVFRVF-KKFKALVEKQSGKHIKVLRSDRGKEYTSRE 362
+Y L DD+SR TWVYFL K E R F + FK K L + E + R
Sbjct: 21 KYEFLTVDDYSRYTWVYFLAHKHESLRYFIRGFKMK------KVFVFLLLEVTMELSLRI 182
Query: 363 F--DKFCEDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYT 420
+ FCE GI L+ PQ+N V ERK RT+ E AR++L +T
Sbjct: 183 LS*NHFCERNGIFHNLS*PRTPQENRVVERKNRTLQEKARTIL---------------FT 317
Query: 421 AVYILNRCPTNAVQNKTPIEAWCGKK 446
++ N+ + KTP E W G++
Sbjct: 318 TCFVQNKILIRPMIKKTPYELWKGRR 395
>BI424202
Length = 421
Score = 63.9 bits (154), Expect = 4e-10
Identities = 36/103 (34%), Positives = 56/103 (53%)
Frame = -3
Query: 220 DDSWLWHRRFGHFNTQVLKLLYQKNMMRDLPSLKESNEACERCLLGMQRRVSFSTCKEWR 279
+ S LWHRR GH + + +K L + ++ L E C+ G Q S K R
Sbjct: 389 ESSMLWHRRLGHISIERIKRLVNEGVLSTLDF--ADFETYVDCIKGKQTNKSKKGAK--R 222
Query: 280 AKDVLELIHTDVCGPMRTSSHDNNRYFILFTDDFSRMTWVYFL 322
+ ++LE+IHTD+C P ++ +YFI F DD+SR ++YF+
Sbjct: 221 SSNLLEIIHTDICCP--DMDANSLKYFITFIDDYSRYMYLYFI 99
Score = 48.1 bits (113), Expect = 2e-05
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = -2
Query: 302 NNRYFILFTDDFSRMTWVYFLKAKSEVFRVFKKFKALVEKQSGKHIKVLRSDRG 355
+N Y LFT +V L +K+E VFK FKA VEKQ GK IK++RSDRG
Sbjct: 147 HNLYR*LFT------IYVSLLHSKNEALDVFKVFKAEVEKQCGKQIKIMRSDRG 4
>TC213920
Length = 428
Score = 60.1 bits (144), Expect = 5e-09
Identities = 36/86 (41%), Positives = 50/86 (57%)
Frame = -3
Query: 367 CEDEGIERQLTVAYIPQQNGVSERKKRTIMEMARSMLKEKGMHNTFWWAEAVYTAVYILN 426
C + I Q T+ PQQNGVSE++ RT+M+M RSML + + W + TA+ +LN
Sbjct: 369 CSETCICVQYTILGTPQQNGVSEKRNRTLMDMVRSMLIN*TLSISL-WMYTLKTAM*LLN 193
Query: 427 RCPTNAVQNKTPIEAWCGKKPSTKHL 452
R P+ V KTP E + PS +HL
Sbjct: 192 RVPSKVVP-KTPFEL*TNRIPSIRHL 118
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.331 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,414,880
Number of Sequences: 63676
Number of extensions: 716263
Number of successful extensions: 4616
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 4442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4544
length of query: 1070
length of database: 12,639,632
effective HSP length: 107
effective length of query: 963
effective length of database: 5,826,300
effective search space: 5610726900
effective search space used: 5610726900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0192.15