BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.14
(75 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203962 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (18%) 135 5e-33
TC203961 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (10%) 134 9e-33
TC203933 elongation factor 1A SMV resistance-related protein [Gl... 134 9e-33
TC203932 UP|EF1A_SOYBN (P25698) Elongation factor 1-alpha (EF-1-... 134 9e-33
TC203949 homologue to UP|EF1A_VICFA (O24534) Elongation factor 1... 133 1e-32
TC203946 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (47%) 133 2e-32
TC203934 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (22%) 133 2e-32
TC203963 similar to UP|Q8SAT1 (Q8SAT1) Elongation factor 1 alpha... 120 2e-28
BE211146 similar to PIR|S17434|S174 translation elongation facto... 105 4e-24
BE474292 similar to SP|P25698|EF1A Elongation factor 1-alpha (EF... 102 4e-23
TC221769 homologue to UP|EF1A_TRIRE (P34825) Elongation factor 1... 96 3e-21
AW460160 similar to GP|5917747|gb| elongation factor-1 alpha 3 {... 90 2e-19
AI442959 similar to GP|29243204|dbj elongation factor 1A {Avicen... 87 1e-18
AW831689 similar to GP|18873725|gb| elongation factor 1 alpha {S... 82 5e-17
BE057687 similar to GP|29243204|db elongation factor 1A {Avicenn... 79 6e-16
TC203952 homologue to UP|O81921 (O81921) Elongation factor 1-alp... 72 7e-16
BE802853 similar to SP|O24534|EF1A_ Elongation factor 1-alpha (E... 66 4e-12
AW309412 62 7e-11
CK605881 59 4e-10
AW153178 weakly similar to SP|P25698|EF1A Elongation factor 1-al... 59 4e-10
>TC203962 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (18%)
Length = 695
Score = 135 bits (339), Expect = 5e-33
Identities = 67/74 (90%), Positives = 70/74 (94%)
Frame = +3
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKK 61
KEIEKEPKFLKNGDAG+VKMIPTKPMVVETFSEYP LGRFAVRDMRQTV GVIKSVEKK
Sbjct: 267 KEIEKEPKFLKNGDAGYVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKK 446
Query: 62 EPSGAKVTKAALKK 75
+P+GAKVTKAA KK
Sbjct: 447 DPTGAKVTKAAQKK 488
>TC203961 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (10%)
Length = 433
Score = 134 bits (337), Expect = 9e-33
Identities = 66/74 (89%), Positives = 70/74 (94%)
Frame = +1
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKK 61
KE+EKEPKFLKNGDAGFVKMIPTKPMVVETFSEYP LGRFAVRDMRQTV GVIK+VEKK
Sbjct: 22 KELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKK 201
Query: 62 EPSGAKVTKAALKK 75
+P+GAKVTKAA KK
Sbjct: 202DPTGAKVTKAAQKK 243
>TC203933 elongation factor 1A SMV resistance-related protein [Glycine max]
Length = 1323
Score = 134 bits (337), Expect = 9e-33
Identities = 66/74 (89%), Positives = 70/74 (94%)
Frame = +2
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKK 61
KE+EKEPKFLKNGDAGFVKMIPTKPMVVETFSEYP LGRFAVRDMRQTV GVIK+VEKK
Sbjct: 710 KELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKK 889
Query: 62 EPSGAKVTKAALKK 75
+P+GAKVTKAA KK
Sbjct: 890 DPTGAKVTKAAQKK 931
Score = 54.7 bits (130), Expect = 9e-09
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +2
Query: 11 LKNGDAGFVKMIPTKPMVVETFSEY 35
LKNGDAGFVKMIPTKPMVVETFSEY
Sbjct: 5 LKNGDAGFVKMIPTKPMVVETFSEY 79
>TC203932 UP|EF1A_SOYBN (P25698) Elongation factor 1-alpha (EF-1-alpha),
complete
Length = 1766
Score = 134 bits (337), Expect = 9e-33
Identities = 66/74 (89%), Positives = 70/74 (94%)
Frame = +2
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKK 61
KE+EKEPKFLKNGDAGFVKMIPTKPMVVETFSEYP LGRFAVRDMRQTV GVIK+VEKK
Sbjct: 1169 KELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKK 1348
Query: 62 EPSGAKVTKAALKK 75
+P+GAKVTKAA KK
Sbjct: 1349 DPTGAKVTKAAQKK 1390
>TC203949 homologue to UP|EF1A_VICFA (O24534) Elongation factor 1-alpha
(EF-1-alpha), partial (29%)
Length = 761
Score = 133 bits (335), Expect = 1e-32
Identities = 66/74 (89%), Positives = 69/74 (93%)
Frame = +2
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKK 61
KE+EKEPKFLKNGDAG VKMIPTKPMVVETFSEYP LGRFAVRDMRQTV GVIKSVEKK
Sbjct: 170 KELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKK 349
Query: 62 EPSGAKVTKAALKK 75
+P+GAKVTKAA KK
Sbjct: 350 DPTGAKVTKAAAKK 391
>TC203946 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (47%)
Length = 1858
Score = 133 bits (334), Expect = 2e-32
Identities = 66/74 (89%), Positives = 69/74 (93%)
Frame = +3
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKK 61
KE+EKEPKFLKNGDAG VKMIPTKPMVVETFSEYP LGRFAVRDMRQTV GVIKSVEKK
Sbjct: 1158 KELEKEPKFLKNGDAGLVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKK 1337
Query: 62 EPSGAKVTKAALKK 75
+P+GAKVTKAA KK
Sbjct: 1338 DPTGAKVTKAAQKK 1379
>TC203934 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (22%)
Length = 1002
Score = 133 bits (334), Expect = 2e-32
Identities = 65/74 (87%), Positives = 69/74 (92%)
Frame = +2
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKK 61
KE+EKEPKFLKNGDAG VKM+PTKPMVVETFSEYP LGRFAVRDMRQTV GVIKSVEKK
Sbjct: 410 KELEKEPKFLKNGDAGMVKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKK 589
Query: 62 EPSGAKVTKAALKK 75
+P+GAKVTKAA KK
Sbjct: 590 DPTGAKVTKAAAKK 631
>TC203963 similar to UP|Q8SAT1 (Q8SAT1) Elongation factor 1 alpha (Fragment),
partial (24%)
Length = 626
Score = 120 bits (300), Expect = 2e-28
Identities = 58/74 (78%), Positives = 64/74 (86%)
Frame = +1
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKK 61
KE+ KEPKFLKN DAG M+P+ PMVV+TFSEYP LGRFAVRDMRQTV GVIKSVEKK
Sbjct: 88 KELHKEPKFLKNADAGLAHMVPSTPMVVDTFSEYPPLGRFAVRDMRQTVAVGVIKSVEKK 267
Query: 62 EPSGAKVTKAALKK 75
+P+GAKVTKAA KK
Sbjct: 268 DPTGAKVTKAAAKK 309
>BE211146 similar to PIR|S17434|S174 translation elongation factor eEF-1
alpha chain (gene tefS1) - soybean, partial (17%)
Length = 241
Score = 105 bits (262), Expect = 4e-24
Identities = 49/74 (66%), Positives = 62/74 (83%)
Frame = +2
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKK 61
KE+EKEPKFLKNGDAGFVK+IPTKPMVV+TFS YP L F ++D+ QT+ +IK++ KK
Sbjct: 17 KELEKEPKFLKNGDAGFVKIIPTKPMVVKTFSNYPPLDHFTIKDIHQTITIEIIKNMXKK 196
Query: 62 EPSGAKVTKAALKK 75
+P+ +KVTKAA KK
Sbjct: 197DPTISKVTKAAQKK 238
>BE474292 similar to SP|P25698|EF1A Elongation factor 1-alpha (EF-1-alpha).
[Soybean] {Glycine max}, partial (25%)
Length = 385
Score = 102 bits (254), Expect = 4e-23
Identities = 53/73 (72%), Positives = 58/73 (78%)
Frame = +2
Query: 3 EIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKKE 62
E+EKEPKFLKN DAGFV MI TKPM VETFS YP L RFAV+DMRQTV GVI + EK +
Sbjct: 164 ELEKEPKFLKNRDAGFVMMISTKPMAVETFSVYPPLCRFAVKDMRQTVAEGVITNDEKND 343
Query: 63 PSGAKVTKAALKK 75
+GA VTKAA KK
Sbjct: 344 STGANVTKAAHKK 382
>TC221769 homologue to UP|EF1A_TRIRE (P34825) Elongation factor 1-alpha
(EF-1-alpha), partial (20%)
Length = 522
Score = 96.3 bits (238), Expect = 3e-21
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = +2
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKK 61
K E PKF+K+GD+ VKMIP+KPM VE F++YP LGRFAVRDMRQTV GVIK+V+K
Sbjct: 47 KATETAPKFIKSGDSAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDKS 226
Query: 62 EPSGAKVTKAALK 74
+ KVTK+A K
Sbjct: 227 AATAGKVTKSAAK 265
>AW460160 similar to GP|5917747|gb| elongation factor-1 alpha 3 {Lilium
longiflorum}, partial (29%)
Length = 412
Score = 89.7 bits (221), Expect = 2e-19
Identities = 44/72 (61%), Positives = 54/72 (74%)
Frame = +2
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKK 61
+E++ EPKFLKNGDA V+MIPTKPM VETFSEYP +GR+AV D+ TV VI SVEK
Sbjct: 197 QELDNEPKFLKNGDACMVQMIPTKPMAVETFSEYPSIGRYAVMDILPTVAV*VIMSVEKN 376
Query: 62 EPSGAKVTKAAL 73
+ +GA V A +
Sbjct: 377 DQTGALVASAVV 412
>AI442959 similar to GP|29243204|dbj elongation factor 1A {Avicennia marina},
partial (12%)
Length = 169
Score = 87.4 bits (215), Expect = 1e-18
Identities = 44/56 (78%), Positives = 49/56 (86%)
Frame = -1
Query: 17 GFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKKEPSGAKVTKAA 72
GFVKMIPTKPMVVETFSEYP LGRFAVRD+RQ V GVI +V+KK P GA+V+KAA
Sbjct: 169 GFVKMIPTKPMVVETFSEYPPLGRFAVRDLRQLVSVGVI*TVKKKVPPGAQVSKAA 2
>AW831689 similar to GP|18873725|gb| elongation factor 1 alpha {Saccharum
hybrid cultivar CP65-357}, partial (12%)
Length = 169
Score = 82.0 bits (201), Expect = 5e-17
Identities = 40/55 (72%), Positives = 47/55 (84%)
Frame = +2
Query: 21 MIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKKEPSGAKVTKAALKK 75
MIPTKPMVVETFS+YP L FA+RDMRQTV GVIKS++KK+P+ AKV +AA KK
Sbjct: 2 MIPTKPMVVETFSKYPPLDXFAMRDMRQTVTIGVIKSIKKKDPTRAKVAEAATKK 166
>BE057687 similar to GP|29243204|db elongation factor 1A {Avicennia marina},
partial (26%)
Length = 364
Score = 78.6 bits (192), Expect = 6e-16
Identities = 40/56 (71%), Positives = 45/56 (79%)
Frame = +2
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKS 57
KE+ KEP FL NGDAG V MIPTKPMVV++FSE P LGR AVRDMR TV GVI++
Sbjct: 197 KELGKEPPFLTNGDAGLVHMIPTKPMVVDSFSECPPLGRRAVRDMR*TVGVGVIRA 364
>TC203952 homologue to UP|O81921 (O81921) Elongation factor 1-alpha (EF1-a)
(Fragment), partial (85%)
Length = 995
Score = 72.4 bits (176), Expect(2) = 7e-16
Identities = 33/35 (94%), Positives = 34/35 (96%)
Frame = +2
Query: 2 KEIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYP 36
KE+EKEPKFLKNGDAG VKMIPTKPMVVETFSEYP
Sbjct: 737 KELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYP 841
Score = 26.2 bits (56), Expect(2) = 7e-16
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 54 VIKSVEKKEPSGAKVTKAALKK 75
+ K+ KK+P G KV K A KK
Sbjct: 897 IXKNFXKKKPPGTKVXKGAAKK 962
>BE802853 similar to SP|O24534|EF1A_ Elongation factor 1-alpha (EF-1-alpha).
[Broad bean] {Vicia faba}, partial (11%)
Length = 163
Score = 65.9 bits (159), Expect = 4e-12
Identities = 34/50 (68%), Positives = 38/50 (76%)
Frame = -1
Query: 26 PMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKKEPSGAKVTKAALKK 75
PMVV F EYP +GR VR+M QTV VI SVEKK+P+GAKVTKAA KK
Sbjct: 151 PMVVAIFLEYPHIGRCVVRNMCQTVAVEVIMSVEKKDPTGAKVTKAAAKK 2
>AW309412
Length = 163
Score = 61.6 bits (148), Expect = 7e-11
Identities = 31/54 (57%), Positives = 36/54 (66%)
Frame = -1
Query: 22 IPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKKEPSGAKVTKAALKK 75
IP +P FSE+P GR VR MR V GVI SV+KK+P+ AKVTKAA KK
Sbjct: 163 IPPEPQRAHIFSEHPPFGRSVVRHMRPLVAVGVINSVDKKDPTAAKVTKAAAKK 2
>CK605881
Length = 444
Score = 59.3 bits (142), Expect = 4e-10
Identities = 30/55 (54%), Positives = 34/55 (61%)
Frame = -2
Query: 20 KMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKKEPSGAKVTKAALK 74
KM+P+KP+ F +YP LG F VRDM QTV GVIK EK P KVTK K
Sbjct: 443 KMVPSKPLCGGGFPDYPPLGGFPVRDMGQTVAVGVIKFFEKAAPGSGKVTKFVAK 279
>AW153178 weakly similar to SP|P25698|EF1A Elongation factor 1-alpha
(EF-1-alpha). [Soybean] {Glycine max}, partial (27%)
Length = 394
Score = 59.3 bits (142), Expect = 4e-10
Identities = 33/67 (49%), Positives = 39/67 (57%)
Frame = +2
Query: 3 EIEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPLLGRFAVRDMRQTVVTGVIKSVEKKE 62
E+E E +L N DAGFV MI T M ET + P + RFA DM QT GVIKS +
Sbjct: 194 ELENESIYLMNSDAGFVNMIATTSMGAETSCDCPTVCRFAATDMHQTCADGVIKSHMMTD 373
Query: 63 PSGAKVT 69
+GAK T
Sbjct: 374 HTGAKDT 394
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.133 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,950,340
Number of Sequences: 63676
Number of extensions: 14290
Number of successful extensions: 75
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of query: 75
length of database: 12,639,632
effective HSP length: 51
effective length of query: 24
effective length of database: 9,392,156
effective search space: 225411744
effective search space used: 225411744
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0192.14