TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0162a.12
         (34 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216177 similar to UP|Q9JI95 (Q9JI95) CPN10-like protein, parti...    61  1e-10
TC216176 similar to UP|Q9JI95 (Q9JI95) CPN10-like protein, parti...    61  1e-10
TC209543 similar to UP|CH10_ARATH (P34893) 10 kDa chaperonin (Pr...    53  3e-08
TC223555 similar to UP|Q7PXP0 (Q7PXP0) AgCP11981 (Fragment), par...    41  1e-04
TC203278 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, ...    33  0.045
TC203978 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, ...    32  0.10
TC203993 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, ...    32  0.10
TC203644 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, ...    31  0.17

>TC216177 similar to UP|Q9JI95 (Q9JI95) CPN10-like protein, partial (36%)
          Length = 618

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = +1

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           GD VLLP YGG+QIKLDDKEF LFRDEDILGIL
Sbjct: 337 GDHVLLPEYGGTQIKLDDKEFHLFRDEDILGIL 435


>TC216176 similar to UP|Q9JI95 (Q9JI95) CPN10-like protein, partial (36%)
          Length = 592

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = +1

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           GD VLLP YGG+QIKLDDKEF LFRDEDILGIL
Sbjct: 298 GDHVLLPEYGGTQIKLDDKEFHLFRDEDILGIL 396


>TC209543 similar to UP|CH10_ARATH (P34893) 10 kDa chaperonin (Protein CPN10)
           (Protein groES), partial (98%)
          Length = 487

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 23/33 (69%), Positives = 29/33 (87%)
 Frame = +3

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           GD VLLP YGG+++KLD+KE+ LFRD+DILG L
Sbjct: 258 GDTVLLPEYGGTEVKLDNKEYHLFRDDDILGTL 356


>TC223555 similar to UP|Q7PXP0 (Q7PXP0) AgCP11981 (Fragment), partial (74%)
          Length = 723

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 19/31 (61%), Positives = 26/31 (83%), Gaps = 1/31 (3%)
 Frame = +2

Query: 1   GDQVLLPAYGGSQIKL-DDKEFLLFRDEDIL 30
           GDQVLLP YGG++++L + KEF LFR+ D+L
Sbjct: 335 GDQVLLPEYGGTKVELSESKEFHLFRESDML 427


>TC203278 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, partial
           (86%)
          Length = 1099

 Score = 32.7 bits (73), Expect = 0.045
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           G QV+   Y G+++  D  + L+ +D+DI+GIL
Sbjct: 481 GAQVVYSKYAGTEVDFDGTKHLIVKDDDIVGIL 579


>TC203978 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, partial
           (83%)
          Length = 1070

 Score = 31.6 bits (70), Expect = 0.10
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           G QV+   Y G++++ +  + L+ +D+DI+GIL
Sbjct: 497 GLQVVYSKYAGTEVEFNGSKHLILKDDDIVGIL 595


>TC203993 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, partial
           (79%)
          Length = 783

 Score = 31.6 bits (70), Expect = 0.10
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           G QV+   Y G++++ +  + L+ +D+DI+GIL
Sbjct: 217 GAQVVHSKYAGTEVEFNGSKHLILKDDDIVGIL 315


>TC203644 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor, partial
           (87%)
          Length = 1177

 Score = 30.8 bits (68), Expect = 0.17
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 1   GDQVLLPAYGGSQIKLDDKEFLLFRDEDILGIL 33
           G QV+   Y G+++  +  + L+ +D+DI+GIL
Sbjct: 510 GAQVVYSKYAGTEVDFNGTKHLIVKDDDIVGIL 608


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.154    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,118,628
Number of Sequences: 63676
Number of extensions: 5730
Number of successful extensions: 27
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of query: 34
length of database: 12,639,632
effective HSP length: 10
effective length of query: 24
effective length of database: 12,002,872
effective search space: 288068928
effective search space used: 288068928
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)