BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0152.2
(603 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232956 similar to UP|Q8SKI1 (Q8SKI1) ATPase subunit 6 (Fragmen... 42 8e-04
CA801926 similar to GP|9828634|gb F1N21.5 {Arabidopsis thaliana}... 39 0.007
TC212535 39 0.009
TC230862 37 0.019
TC234187 weakly similar to UP|MFP1_LYCES (P93203) MAR binding fi... 37 0.025
NP004897 gag-protease polyprotein 36 0.056
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 36 0.056
BE020187 35 0.12
BI788076 33 0.47
TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 33 0.47
TC203824 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor... 33 0.47
TC210783 weakly similar to UP|O14760 (O14760) Small intestinal m... 32 0.62
TC206031 similar to UP|Q38949 (Q38949) Rof1 , partial (68%) 32 0.62
TC227594 UP|Q43450 (Q43450) G-box binding factor (Fragment), com... 32 0.81
TC204849 similar to GB|AAM16178.1|20334844|AY094022 AT3g12390/T2... 32 0.81
TC208617 weakly similar to UP|Q41026 (Q41026) HMG 1 protein, par... 32 0.81
TC227595 homologue to UP|Q43451 (Q43451) G-box binding factor (F... 32 0.81
TC212423 32 0.81
TC219909 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-... 32 1.1
TC211867 weakly similar to UP|PNX1_HUMAN (P55347) Homeobox prote... 32 1.1
>TC232956 similar to UP|Q8SKI1 (Q8SKI1) ATPase subunit 6 (Fragment), partial
(9%)
Length = 915
Score = 42.0 bits (97), Expect = 8e-04
Identities = 44/171 (25%), Positives = 81/171 (46%), Gaps = 2/171 (1%)
Frame = +1
Query: 425 LESADFDGINSAKQLEEKEREILKMKATMKLLDSANKVNEKKAADLALEN--ERLKKHVE 482
+E+AD D + K ++++R + K +++D NK ++K AD E+ + +E
Sbjct: 115 IEAAD-DLDSGRKSSKKRKRTVDASKKEDRVVDEENKGHKKDKADRKKESLITNVDPGME 291
Query: 483 DLNITQKAKEEELVKSKAEITHLNSSNAELKNENSKLHSEVSELKNSVLDQFEAGFAKAK 542
+ + +KAK+++ K N S E K + + E SEL V+D EA FA
Sbjct: 292 NKSTKKKAKKDDKPLDKGFALEENVSKVEKKLKKQHKNGEQSEL--DVIDDAEASFA--- 456
Query: 543 EQILFLNPQVSINLAGSDPYARIVDGKLISPDTGDEEDEGEEDKNEEDENV 593
++ +N ++NLA + A+ K + GD + KN + +N+
Sbjct: 457 -ELFKINDAENLNLA-DEMKAQDKAPKDVMKLAGDPVTSFAKHKNAKIQNM 603
>CA801926 similar to GP|9828634|gb F1N21.5 {Arabidopsis thaliana}, partial
(8%)
Length = 478
Score = 38.9 bits (89), Expect = 0.007
Identities = 29/137 (21%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Frame = +3
Query: 411 TKGLEIAAISKMIDLESADFDGINSAKQLEEKEREILKM--KATMKLLDSANKVNEKKAA 468
T+G E +K++++E + + ++ +++ ++E+ + K K K ++ KV K
Sbjct: 3 TRGFEHGLKNKLVEVEKKEAEITHAEEKVVKREQALGKKAEKLKEKEIEYEQKVKALKEK 182
Query: 469 DLALENERLKKHVEDLNITQKAKEEELVKSKAEITHLNSSNAELKNENSKLHSEVSELKN 528
+ +++E E I +++ EEL+ KAE+ + ++N E E +++ E+ LK
Sbjct: 183 EKLIKSEEKSLETEKRKI--ESEREELLTHKAEVEKIRANNEE---ELLRINEEIDRLK- 344
Query: 529 SVLDQFEAGFAKAKEQI 545
V ++ + + + + Q+
Sbjct: 345 -VTEEERSEYLRLQSQL 392
>TC212535
Length = 757
Score = 38.5 bits (88), Expect = 0.009
Identities = 21/56 (37%), Positives = 32/56 (56%)
Frame = +1
Query: 95 CKLPLSDFTCSVLTLLNVAPTQLHCNSWAYLRAFELLCQVLGIEPTSNKFFYFFET 150
C+ L F VL + N AP+QLH N ++AF +L + +EPT+ F + F+T
Sbjct: 193 CRDSL*LFHHDVLHIPNTAPSQLHPNG*VAIQAFCILYRFFRMEPTTGLFLHHFQT 360
>TC230862
Length = 868
Score = 37.4 bits (85), Expect = 0.019
Identities = 35/127 (27%), Positives = 56/127 (43%), Gaps = 6/127 (4%)
Frame = +1
Query: 436 AKQLEEKEREILKMKATMKLLDSANKVNEKKAADLALENERLKKHVEDLNITQKAKEEEL 495
A LE + E+ + +KLL SA +EK+ + + E ++ +E +K EEEL
Sbjct: 307 AVTLEFAKWELADAEKELKLLKSAVSSSEKEYDQIQKDTEAIEMELESERSLRKKLEEEL 486
Query: 496 VKSKAEITHLNSSNAELKNENSKLHSEVSELKNSVLDQFEAGFAKAKEQI------LFLN 549
+ +I L S E + KL E+ KN + + + KE + LF N
Sbjct: 487 RELNCKIDELTSETGETTIQ--KLEKEIRICKNMI--KCTVCTDRPKEVVIVKCYHLFCN 654
Query: 550 PQVSINL 556
P + NL
Sbjct: 655 PCIQRNL 675
>TC234187 weakly similar to UP|MFP1_LYCES (P93203) MAR binding filament-like
protein 1, partial (6%)
Length = 595
Score = 37.0 bits (84), Expect = 0.025
Identities = 31/148 (20%), Positives = 67/148 (44%)
Frame = +2
Query: 436 AKQLEEKEREILKMKATMKLLDSANKVNEKKAADLALENERLKKHVEDLNITQKAKEEEL 495
+K L EKE E+ ++K +L ++ ADL+ E + LK+ +++ + ++EL
Sbjct: 101 SKVLREKEEELHQLKDQFELALGEASKSQIVIADLSQERDDLKEALDNESSKVNHLKQEL 280
Query: 496 VKSKAEITHLNSSNAELKNENSKLHSEVSELKNSVLDQFEAGFAKAKEQILFLNPQVSIN 555
+ + + +AEL+N + L N + + E +K ++ +N + N
Sbjct: 281 QVTLENLAKSRNESAELEN--------LLTLSNKLCKELELEVSKLSSELTEVNESLQRN 436
Query: 556 LAGSDPYARIVDGKLISPDTGDEEDEGE 583
L + A ++ +L + +E + E
Sbjct: 437 LDDAKHEAEMLASELTTAKEHLKEAQAE 520
>NP004897 gag-protease polyprotein
Length = 1923
Score = 35.8 bits (81), Expect = 0.056
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +1
Query: 466 KAADLALENERLKKHVEDLNITQKAKEEELVKSKAEITHLNS------SNAELKNENSKL 519
K+ + + +LKK + +L ++A EEE+ + K E+ LNS + ++ N+ S +
Sbjct: 1141 KSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDM 1320
Query: 520 HSEVSELKNSVLDQFEAGF 538
EV +L +V +Q GF
Sbjct: 1321 LDEVLQLGKNVGNQRGLGF 1377
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 35.8 bits (81), Expect = 0.056
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +1
Query: 466 KAADLALENERLKKHVEDLNITQKAKEEELVKSKAEITHLNS------SNAELKNENSKL 519
K+ + + +LKK + +L ++A EEE+ + K E+ LNS + ++ N+ S +
Sbjct: 1141 KSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDM 1320
Query: 520 HSEVSELKNSVLDQFEAGF 538
EV +L +V +Q GF
Sbjct: 1321 LDEVLQLGKNVGNQRGLGF 1377
>BE020187
Length = 384
Score = 34.7 bits (78), Expect = 0.12
Identities = 24/91 (26%), Positives = 44/91 (47%)
Frame = +2
Query: 437 KQLEEKEREILKMKATMKLLDSANKVNEKKAADLALENERLKKHVEDLNITQKAKEEELV 496
+QL+ K E +++ +KLL+ + + + +H+++L +++E E
Sbjct: 26 EQLDNKCSENRELQEKVKLLEQQLATVTGGTSLMLTDQCPSGEHIDELKRKIQSQEIENE 205
Query: 497 KSKAEITHLNSSNAELKNENSKLHSEVSELK 527
K K E HL+ N+ L +N KL E S K
Sbjct: 206 KLKLEQVHLSEENSGLHVQNQKLSEEASYAK 298
>BI788076
Length = 368
Score = 32.7 bits (73), Expect = 0.47
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +3
Query: 420 SKMIDLESADFDGINSAKQLEEKEREILKMKATMKLLDSANKVNEKKAADLALENERLKK 479
+K LE + + SAK+ + E+L ++ +KLL+ K E + ++ ENE +
Sbjct: 105 AKDASLEKLEACNVESAKE----KSEVLALREKVKLLEEEQKDFELRINNVMAENEACHE 272
Query: 480 H-VEDLNITQKAKEE-ELVKSKAE 501
H +E N + KE ++ +++AE
Sbjct: 273 HLIEMENFVESLKESIDIAENRAE 344
>TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 857
Score = 32.7 bits (73), Expect = 0.47
Identities = 12/28 (42%), Positives = 22/28 (77%)
Frame = +1
Query: 574 DTGDEEDEGEEDKNEEDENVNDNEGEGE 601
D GDE+D+G+++ +EED++ ++E E E
Sbjct: 505 DDGDEDDDGDDNGDEEDDDDGEDEEEDE 588
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/49 (36%), Positives = 25/49 (50%)
Frame = +1
Query: 549 NPQVSINLAGSDPYARIVDGKLISPDTGDEEDEGEEDKNEEDENVNDNE 597
+P+ N GSD DG D GDEED+ + + EEDE ++ E
Sbjct: 472 DPEDEANGEGSDDGDEDDDGD----DNGDEEDDDDGEDEEEDEEEDEEE 606
Score = 28.9 bits (63), Expect = 6.9
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 574 DTGDEED--EGEEDKNEEDENVNDNEGEGE 601
+T DEED E +ED +EDE+ +D E GE
Sbjct: 364 ETEDEEDGDEDDEDGPDEDEDGDDEEFSGE 453
>TC203824 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor SC35
(CG5442-PB) (LD32469p), partial (6%)
Length = 1532
Score = 32.7 bits (73), Expect = 0.47
Identities = 41/144 (28%), Positives = 65/144 (44%), Gaps = 1/144 (0%)
Frame = +2
Query: 394 REKVKKIGLKEACQAIMTKGLEIAAISKMIDLESADFDGINSAKQLEEKEREILKMKATM 453
R+ +KIG+ E TK EI +K I E D +++EKEREI + +
Sbjct: 683 RDLERKIGVLE------TK--EIEERNKRIRFEEETRD------KIDEKEREIKGYRQKV 820
Query: 454 KLLDSANKVNEKKAADLALENERLKKHVEDLNITQKAK-EEELVKSKAEITHLNSSNAEL 512
+ L EK AA+ E + L K QK + EE L +S+ ++T L SS +L
Sbjct: 821 EEL-------EKVAAEKKTELDELVK--------QKLRLEEALRESEEKVTGLESSILQL 955
Query: 513 KNENSKLHSEVSELKNSVLDQFEA 536
+ E + + L ++ E+
Sbjct: 956 RKEAKEAERVIISLNEKAVETVES 1027
>TC210783 weakly similar to UP|O14760 (O14760) Small intestinal mucin MUC3
(Fragment), partial (5%)
Length = 735
Score = 32.3 bits (72), Expect = 0.62
Identities = 37/144 (25%), Positives = 68/144 (46%), Gaps = 2/144 (1%)
Frame = +3
Query: 360 KEFEELTSEEVTSLWDSKIDFNSLVETNLVFEADREKVKKIGLKEACQAIMTKGLEIAAI 419
K F+E T +E+T D + D ++E N + + VK+I E +A+ + +E
Sbjct: 255 KSFQEKTLDEITEKKDLETDGGKVLENNGI---KKNIVKEI---EDKKAVGVEKVEEDKK 416
Query: 420 SKMID--LESADFDGINSAKQLEEKEREILKMKATMKLLDSANKVNEKKAADLALENERL 477
+ +++ E DG+ AK E+K+ + ++K K D + E K D +E +
Sbjct: 417 NGVVEDAKEDKKEDGVKEAK--EDKKEVVEEVKEDNK-EDGVEEAKENKKED-GVEEVKE 584
Query: 478 KKHVEDLNITQKAKEEELVKSKAE 501
K V+ + ++ KE + VK E
Sbjct: 585 VKEVDGVKEIKEDKEVDGVKEVKE 656
>TC206031 similar to UP|Q38949 (Q38949) Rof1 , partial (68%)
Length = 1350
Score = 32.3 bits (72), Expect = 0.62
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Frame = +2
Query: 441 EKEREILKMKATMKLLDSANKVNEK-----KAADLALENERLKKHVEDLNITQKAKEEEL 495
EKE+E M K+ ++A K E+ KA A ++R +K V+ + EEE
Sbjct: 632 EKEKESWDMDTPEKI-EAAGKKKEEGNALFKAGKYARASKRYEKAVKFIEYDTAFSEEEK 808
Query: 496 VKSKAEITHLNSSNAELKNENSKLHSEVSELKNSVLDQFEAGFAKAKEQILFLNPQVSIN 555
SKA N +NA K + K + + +L VLD E+ KA L+ Q I
Sbjct: 809 KSSKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD-LESTNVKA----LYRRAQAYIQ 970
Query: 556 LAGSD 560
LA D
Sbjct: 971 LADLD 985
>TC227594 UP|Q43450 (Q43450) G-box binding factor (Fragment), complete
Length = 1872
Score = 32.0 bits (71), Expect = 0.81
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = +2
Query: 441 EKEREILKMKATMKLLDSANKVNEKKAADLALENERLKKHVEDLNITQKAKEEELVKSKA 500
+ ERE+ + + +SA + +K A E E L + VE L E V K+
Sbjct: 1073 QNERELKRERRKQSNRESARRSRLRKQA----ETEELARKVEMLTA-------ENVSLKS 1219
Query: 501 EITHLNSSNAELKNENSKLHSEV 523
EIT L + +++ ENS L ++
Sbjct: 1220 EITRLTEGSEQMRMENSALREKL 1288
>TC204849 similar to GB|AAM16178.1|20334844|AY094022 AT3g12390/T2E22_130
{Arabidopsis thaliana;} , partial (96%)
Length = 883
Score = 32.0 bits (71), Expect = 0.81
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 564 RIVDGKLISPDTGDEEDEGEEDKNEEDENVNDNEGE 599
+I DG+ + D DEE++ ++D +E+D++ EG+
Sbjct: 116 KIHDGEPVVEDDDDEEEDDDDDDDEDDDHAEGLEGD 223
>TC208617 weakly similar to UP|Q41026 (Q41026) HMG 1 protein, partial (51%)
Length = 872
Score = 32.0 bits (71), Expect = 0.81
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Frame = +1
Query: 289 KTLLDADASHSGTESNRPQKKKRKNETPES-----AKGKDSSQPSMEK-----FMV---- 334
K LDA E+ +P++KK K++ P + KGK P+M K F V
Sbjct: 181 KMNLDAQVVEQAAEAKKPERKKPKSKEPMAKKAKVGKGKKVKDPNMPKRPPTAFFVFLDD 360
Query: 335 ------KGNPQHMTLKAGSSSAPPPSWKSLLKEFEELTSEEVTSLWDSKIDFNSLVETNL 388
+ NP +K A W+S+ E ++ ++V L K ++ +E+
Sbjct: 361 FRKSFKEANPDSKDVKRVGKEA-GEKWRSMTDEEKKPYLDKVAEL---KAEYEKAMES-- 522
Query: 389 VFEADREKVKKIG 401
+EA +++ + G
Sbjct: 523 -YEAGQDEEDQAG 558
>TC227595 homologue to UP|Q43451 (Q43451) G-box binding factor (Fragment),
complete
Length = 1453
Score = 32.0 bits (71), Expect = 0.81
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = +3
Query: 441 EKEREILKMKATMKLLDSANKVNEKKAADLALENERLKKHVEDLNITQKAKEEELVKSKA 500
+ ERE+ + + +SA + +K A E E L + VE L E V K+
Sbjct: 654 QNERELKRERRKQSNRESARRSRLRKQA----ETEELARKVEMLTA-------ENVSLKS 800
Query: 501 EITHLNSSNAELKNENSKLHSEV 523
EIT L + +++ ENS L ++
Sbjct: 801 EITRLTEGSEQMRMENSALREKL 869
>TC212423
Length = 578
Score = 32.0 bits (71), Expect = 0.81
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 572 SPDTGDEEDEGEEDKNEEDENVNDNEG 598
SP DE+DEGE + NE+ N+N G
Sbjct: 490 SPSNIDEDDEGESEANEDQSKQNNNGG 570
>TC219909 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (21%)
Length = 943
Score = 31.6 bits (70), Expect = 1.1
Identities = 15/35 (42%), Positives = 18/35 (50%)
Frame = -3
Query: 567 DGKLISPDTGDEEDEGEEDKNEEDENVNDNEGEGE 601
DG + P G E+DEG D EEDE D + E
Sbjct: 566 DGGEVGPAGGGEDDEGPGDGGEEDEGPGDGGEDDE 462
Score = 29.3 bits (64), Expect = 5.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 573 PDTGDEEDEGEEDKNEEDENVNDNEG 598
P G EEDEG D E+DE D G
Sbjct: 518 PGDGGEEDEGPGDGGEDDEGPRDGGG 441
>TC211867 weakly similar to UP|PNX1_HUMAN (P55347) Homeobox protein PKNOX1
(PBX/knotted homeobox 1) (Homeobox protein PREP-1),
partial (6%)
Length = 900
Score = 31.6 bits (70), Expect = 1.1
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +3
Query: 302 ESNRPQKKKRKNETPESAKGKDSSQPSMEKFMVKGNPQHMTLKAGSSSAPPPSWKSLLKE 361
E PQ++K + + + AK K + +P+ +K +K NP ++A P +
Sbjct: 102 EQKAPQRRKHRPKVIKEAKPKSTRKPATQKTQMKENPHKKRKYVRKTAATPQT------- 260
Query: 362 FEELTSEEVTSLWDSK 377
+T E V S+ +K
Sbjct: 261 --NVTEESVDSIVATK 302
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.130 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,239,876
Number of Sequences: 63676
Number of extensions: 349233
Number of successful extensions: 2232
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 1930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2128
length of query: 603
length of database: 12,639,632
effective HSP length: 103
effective length of query: 500
effective length of database: 6,081,004
effective search space: 3040502000
effective search space used: 3040502000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0152.2